FFCP PHASE1:Hg19::chr19:50194360..50194403,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:50194360..50194403,+ to FFCP PHASE1:Hg19::chr19:50194360..50194403,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=126129 | |EntrezGene=126129 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18540 | |HGNC=18540 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TCG5,A8K0Z8 | |UniProt=Q8TCG5,A8K0Z8 | ||
|association_with_transcript=0bp_to_ENST00000354199,ENST00000392518,ENST00000405931,NM_001136052,NM_001199752,NM_001199753,NM_152359,uc002ppi.2,uc002ppj.2,uc002ppk.2,uc002ppl.3,uc010eng.2,uc010enh.2_5end | |||
|cluster_id=chr19:50194360..50194403,+ | |||
|description=CAGE_peak_1_at_CPT1C_5end | |||
|id=chr19:50194360..50194403,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.41e-25!180;CL:0000393!8.48e-13!60;CL:0000211!8.48e-13!60;CL:0000183!4.27e-11!59;CL:0000192!1.68e-10!42;CL:0000514!1.68e-10!42;CL:0000133!1.71e-10!59;CL:0000222!1.91e-10!119;CL:0000187!2.45e-10!54;CL:0000680!6.45e-10!57;CL:0000056!6.45e-10!57;CL:0000355!6.45e-10!57;CL:0000057!5.17e-09!75;CL:0000359!1.11e-08!32;CL:0002321!4.79e-08!248;CL:0000333!1.16e-07!41;CL:0000220!1.64e-07!246;CL:0000221!3.51e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.27e-08;32!CL:0000192;1.96e-08;43!CL:0000393;2.55e-07;61!CL:0000211;2.55e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.62e-13,61;CL:0000211,1.62e-13,61;CL:0000192,5.38e-11,43;CL:0000514,5.38e-11,43;CL:0000187,6.35e-11,55;CL:0000222,6.92e-11,121;CL:0000133,6.93e-11,59;CL:0000680,1.75e-10,58;CL:0000056,1.75e-10,58;CL:0000355,1.75e-10,58;CL:0000359,4.57e-09,32;CL:0000057,7.96e-09,76;CL:0000333,3.29e-08,41;CL:0002321,3.36e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000514;1.96e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.00e-33!94;UBERON:0001016!1.00e-33!94;UBERON:0005743!8.52e-32!86;UBERON:0001017!6.47e-30!82;UBERON:0003075!1.04e-29!86;UBERON:0007284!1.04e-29!86;UBERON:0002346!1.15e-29!90;UBERON:0000483!3.24e-27!309;UBERON:0000119!3.37e-27!312;UBERON:0001049!5.72e-26!57;UBERON:0005068!5.72e-26!57;UBERON:0006241!5.72e-26!57;UBERON:0007135!5.72e-26!57;UBERON:0000025!1.34e-25!194;UBERON:0003056!2.73e-25!61;UBERON:0000955!4.85e-25!69;UBERON:0006238!4.85e-25!69;UBERON:0002616!1.18e-24!59;UBERON:0000924!3.27e-24!173;UBERON:0006601!3.27e-24!173;UBERON:0004121!7.05e-24!169;UBERON:0004111!2.06e-23!241;UBERON:0000475!1.19e-22!365;UBERON:0000033!2.16e-22!123;UBERON:0000477!2.25e-22!286;UBERON:0002780!2.83e-21!41;UBERON:0001890!2.83e-21!41;UBERON:0006240!2.83e-21!41;UBERON:0003080!1.11e-20!42;UBERON:0000153!3.87e-20!129;UBERON:0007811!3.87e-20!129;UBERON:0001893!5.83e-18!34;UBERON:0002791!2.79e-17!33;UBERON:0002020!2.85e-17!34;UBERON:0003528!2.85e-17!34;UBERON:0001869!4.46e-17!32;UBERON:0000481!1.29e-16!347;UBERON:0002049!1.62e-15!79;UBERON:0007798!1.62e-15!79;UBERON:0000468!1.98e-15!659;UBERON:0000956!3.26e-13!25;UBERON:0000203!3.26e-13!25;UBERON:0000055!5.39e-13!69;UBERON:0000064!9.30e-13!219;UBERON:0001981!1.90e-12!60;UBERON:0007500!1.90e-12!60;UBERON:0004537!1.90e-12!60;UBERON:0006965!1.90e-12!60;UBERON:0002619!3.87e-12!22;UBERON:0004872!1.88e-11!84;UBERON:0000922!5.71e-11!612;UBERON:0001950!6.00e-11!20;UBERON:0001637!6.01e-11!42;UBERON:0003509!6.01e-11!42;UBERON:0004572!6.01e-11!42;UBERON:0000467!6.09e-11!625;UBERON:0000480!1.02e-10!626;UBERON:0004535!2.76e-10!110;UBERON:0000914!5.92e-10!83;UBERON:0002329!5.92e-10!83;UBERON:0003077!5.92e-10!83;UBERON:0003059!5.92e-10!83;UBERON:0007282!5.92e-10!83;UBERON:0009618!5.92e-10!83;UBERON:0007285!5.92e-10!83;UBERON:0004573!6.66e-10!33;UBERON:0004571!6.66e-10!33;UBERON:0001009!7.11e-10!113;UBERON:0002050!3.17e-09!605;UBERON:0005423!3.17e-09!605;UBERON:0000923!4.05e-09!604;UBERON:0005291!4.05e-09!604;UBERON:0006598!4.05e-09!604;UBERON:0002532!4.05e-09!604;UBERON:0004290!4.13e-09!70;UBERON:0007023!5.46e-09!115;UBERON:0001134!9.80e-09!61;UBERON:0002036!9.80e-09!61;UBERON:0003082!9.80e-09!61;UBERON:0000486!1.10e-08!82;UBERON:0002385!4.48e-08!63;UBERON:0001015!4.48e-08!63;UBERON:0000383!4.48e-08!63;UBERON:0003914!6.65e-08!118;UBERON:0000947!3.09e-07!21;UBERON:0010191!3.09e-07!21;UBERON:0002104!7.94e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.71e-16;34!UBERON:0000073;1.82e-16;53!UBERON:0002616;1.82e-16;53!UBERON:0002780;2.58e-16;41!UBERON:0001890;2.58e-16;41!UBERON:0001869;3.18e-16;32!UBERON:0002791;4.19e-16;32!UBERON:0003528;8.21e-16;34!UBERON:0002020;8.21e-16;34!UBERON:0000956;5.84e-14;25!UBERON:0000203;5.84e-14;25!UBERON:0000955;4.46e-13;68!UBERON:0002619;7.35e-13;22!UBERON:0001017;3.09e-12;75!UBERON:0001950;1.31e-11;20!UBERON:0001016;3.78e-11;83!UBERON:0004573;1.09e-09;33!UBERON:0004571;1.09e-09;33!UBERON:0001637;3.39e-08;42!UBERON:0003509;3.39e-08;42!UBERON:0004572;3.39e-08;42!UBERON:0007500;4.02e-08;56!UBERON:0001981;4.02e-08;56!UBERON:0004537;4.02e-08;56!UBERON:0000947;1.48e-07;21!UBERON:0010191;1.48e-07;21!UBERON:0000055;1.77e-07;65!UBERON:0002049;4.20e-07;75!UBERON:0007798;4.20e-07;75!UBERON:0004732;5.78e-07;13!UBERON:0002104;6.62e-07;21 | |||
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|phase1_expression=4.36028110249336,2.5692062866918,5.3562673556469,8.00586386825043,9.38618298297304,6.97870819280295,2.53299878168311,5.68547886084148,3.65659879479774,3.44027511102112,1.39560233594486,0.218441372130172,0.527533956456907,20.9165136502479,20.5466372951308,16.1358035148426,9.64311244838363,13.1455816269727,10.7345215733912,20.5612166988236,9.58803248847989,10.0305510872988,18.8915751506497,12.7293215317782,10.5455817259634,0,0,0,0,0,0.154816123316076,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0.473447805734733,0,0.111410456885174,0,0.443067789167242,0,0.384273959177026,0.390178042679635,0,0,0,0,0,0,0,0,0,0.759059076058509,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,7.37770945674,1.66221330396589,7.59022220007589,14.5387994084408,9.84956328933601,7.95285947051099,6.8128881842369,15.4091751977431,14.6341402325292,12.2090352113445,7.59678637886733,0.364295288292542,0,0,0,0.132957960518865,0,0,0,6.75792185046797,6.881876760849,9.02565304179745,10.1755429546322,10.9069853414576,5.77747888074142,10.4497483268405,3.35941786920128,3.5576626268671,10.3763389957048,12.4877088303836,9.12326526862215,13.4234131651493,10.6622293300302,10.5318453224629,9.19787201326022,6.28682243353275,7.54496919238259,4.5994991239765,1.89853131913626,9.16008719652036,0,0,0.436094052142534,9.44246708221105,11.0168545148184,18.0076485905978,23.2337662806539,7.09336764396714,3.92474320099615,8.5399196583764,1.2333377420858,5.91300967259556,5.25371621071783,2.61539044981534,6.20565453344219,2.30470369792,11.2474287280222,4.37024107562449,3.99330275081114,7.92078006924546,2.93586246609412,0.485618833104395,0.842704840213491,7.55370433643105,6.01888154827663,9.81594921169772,14.2560342873846,6.67620709052104,15.4727431529464,35.9309070908119,4.54507507675979,4.50426671539071,3.3247693858102,5.26773145057006,7.04921930337745,7.51190294532984,0.794025282120147,11.4809366840872,10.2507546632912,2.33125091275518,24.607469878921,10.8205155700361,16.2313540228746,7.81690796592677,14.3459882405076,6.13853132515551,16.1557615516233,9.11293996558764,17.4577741364317,11.3603069605317,3.52632343796741,8.98671139245584,0.193260853163297,0.818238361772504,0.573609190778008,20.6135563359016,26.6384834326185,15.5699883445155,13.6832592620289,13.1206842455327,16.7889585174882,9.38697193978896,14.1513006402435,6.90674606762403,3.25057549622385,5.0531563716871,0,0,0,0,0,0,0,0,0,14.0249536378683,9.81692416624121,8.6430542379594,5.88034845542168,0,0,1.77236972004421,0,0.245976877086227,7.89211927373218,0.439001141634502,0,0.402115889646523,2.03694579348765,7.49359102213747,13.5191522086345,11.5465073620219,25.3887586895418,14.4412693910061,5.05282567163758,4.62985512576611,6.08813287150714,0,0,0,0,0,0,0.16798212819886,0.283550194484773,0,0.290633938513962,0.766765358330422,0,0,0,0,0.12624243342638,2.85740524314761,19.0994212779139,5.86087236050235,8.55362230113526,1.7480673759565,6.9078903304101,6.85983438313388,2.69114602428866,2.1798003441664,2.12681028880755,7.75630294546667,28.6125156681506,0.845302752556,16.488163228262,19.7614130131596,5.65856223376713,0,6.92697665441858,8.57867961948885,8.13932408087165,4.93944202068461,2.60588947434988,11.3725423597615,5.543663110534,13.5647719676814,11.3299349618038,8.29775826811074,0,0,0,5.75099653179798,10.3375742250703,1.42636905040718,2.17171960001369,2.05476322550383,1.25342674267927,0,0,0,0,12.9588258353456,20.8223766172195,22.4253755705532,30.4879602908515,16.5864075429822,0,0,0,14.2322130394202,19.0064798002677,13.0207211375873,6.86303843051664,2.85486382075459,3.15404830067869,3.63138386477411,7.52365249319297,6.82222512167955,4.1389228517002,7.97070718242524,8.48098175291834,11.6424043387231,35.8316118156815,13.0394501048125,0,0,0.106727557803444,0,4.99306318531491,3.32629322662648,5.21026396419431,3.37616341233737,2.52594084989766,7.68834895534206,4.60536524160033,9.49038134747284,2.96836132889982,4.62629081407967,10.4761417934745,9.44462294158805,5.71179872101983,5.57809816607804,0,0,0.0920809889358963,5.0518357192427,3.64182336013434,9.17870904715969,6.31679458070376,4.46688955205606,2.35304930753057,0,4.3276167846079,9.09867072567173,3.74206151608334,5.18198198645135,37.0145406456694,2.98041081298238,5.01689773854853,1.01950509218015,0.831076008928724,1.79099803777743,0,0,12.3096060055867,24.6010984274779,12.6897573919078,0.824328093181778,2.47237555009527,3.21787049690293,0.574265537996172,0,11.2478750890912,12.4705226596837,3.38906957652218,1.68854042198743,1.24052915236078,15.5759355058997,12.9064857583663,4.51701125305335,9.25933170726069,0,0,1.40373983744043,0,10.2266020845403,45.0181655967815,34.85186350803,13.861511107924,6.38767236380426,19.1385258256516,10.5634804889234,4.00749682877575,2.60510858551767,5.06207079549961,3.62197368455267,7.16513815671735,5.13526785640705,16.5465688921487,13.3441268833869,8.81375042158242,6.58888871366531,10.7209286134575,8.28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| ||
|short_description=p1@CPT1C | |||
}} | }} |
Latest revision as of 08:50, 19 September 2015
Short description: | p1@CPT1C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CPT1C_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000354199, ENST00000392518, ENST00000405931, NM_001136052, NM_001199752, NM_001199753, NM_152359, uc002ppi.2, uc002ppj.2, uc002ppk.2, uc002ppl.3, uc010eng.2, uc010enh.2_5end |
EntrezGene: | CPT1C |
HGNC: | 18540 |
UniProt: | Q8TCG5A8K0Z8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.62e-13 | 61 |
electrically active cell | 1.62e-13 | 61 |
smooth muscle cell | 5.38e-11 | 43 |
smooth muscle myoblast | 5.38e-11 | 43 |
muscle cell | 6.35e-11 | 55 |
mesodermal cell | 6.92e-11 | 121 |
neurectodermal cell | 6.93e-11 | 59 |
muscle precursor cell | 1.75e-10 | 58 |
myoblast | 1.75e-10 | 58 |
multi-potent skeletal muscle stem cell | 1.75e-10 | 58 |
vascular associated smooth muscle cell | 4.57e-09 | 32 |
fibroblast | 7.96e-09 | 76 |
migratory neural crest cell | 3.29e-08 | 41 |
embryonic cell | 3.36e-07 | 250 |