FFCP PHASE1:Hg19::chr22:23484167..23484191,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr22:23484167..23484191,- to FFCP PHASE1:Hg19::chr22:23484167..23484191,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=27156 | |EntrezGene=27156 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13437 | |HGNC=13437 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UHP6 | |UniProt=Q9UHP6 | ||
|association_with_transcript=49bp_to_NM_014433,uc002zwt.2,uc010gtv.1_5end | |||
|cluster_id=chr22:23484167..23484191,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_2_at_RTDR1_5end | |||
|id=chr22:23484167..23484191,- | |||
|ontology_enrichment_celltype=CL:0000542!1.86e-07!53;CL:0000051!1.86e-07!53;CL:0000624!2.61e-07!6;CL:0000791!3.83e-07!18;CL:0000789!3.83e-07!18;CL:0002420!3.83e-07!18;CL:0002419!3.83e-07!18;CL:0000790!3.83e-07!18;CL:0000838!4.36e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:0000623;6.74e-13;3!CL:0000624;8.62e-11;6!CL:0000791;3.70e-10;18!CL:0000789;3.70e-10;18!CL:0002419;3.70e-10;18!CL:0000084;4.81e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000623,4.34e-13,3;CL:0000825,4.34e-13,3;CL:0000624,5.28e-11,6;CL:0000791,2.36e-10,18;CL:0000789,2.36e-10,18;CL:0002420,2.36e-10,18;CL:0002419,2.36e-10,18;CL:0000790,2.36e-10,18;CL:0000838,8.39e-09,52;CL:0000542,1.37e-08,53;CL:0000051,1.37e-08,53;CL:0000084,3.53e-07,25;CL:0000827,3.53e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000790;3.70e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!1.14e-20!86;UBERON:0001017!2.05e-20!82;UBERON:0001049!3.69e-20!57;UBERON:0005068!3.69e-20!57;UBERON:0006241!3.69e-20!57;UBERON:0007135!3.69e-20!57;UBERON:0000073!1.16e-18!94;UBERON:0001016!1.16e-18!94;UBERON:0000955!1.71e-17!69;UBERON:0006238!1.71e-17!69;UBERON:0003075!9.10e-17!86;UBERON:0007284!9.10e-17!86;UBERON:0002780!1.03e-16!41;UBERON:0001890!1.03e-16!41;UBERON:0006240!1.03e-16!41;UBERON:0002616!1.37e-16!59;UBERON:0007023!2.81e-16!115;UBERON:0003080!4.45e-16!42;UBERON:0002346!2.52e-15!90;UBERON:0001893!3.60e-14!34;UBERON:0003056!5.14e-14!61;UBERON:0001869!6.18e-14!32;UBERON:0002020!8.20e-14!34;UBERON:0003528!8.20e-14!34;UBERON:0002791!2.47e-13!33;UBERON:0000153!7.02e-11!129;UBERON:0007811!7.02e-11!129;UBERON:0000956!4.38e-10!25;UBERON:0000203!4.38e-10!25;UBERON:0000033!5.26e-10!123;UBERON:0002619!1.61e-08!22;UBERON:0001950!2.40e-08!20;UBERON:0004121!3.20e-08!169;UBERON:0000924!1.14e-07!173;UBERON:0006601!1.14e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0001896;5.07e-13;3!UBERON:0005290;5.07e-13;3!UBERON:0000007;6.46e-09;2!UBERON:0000073;2.49e-07;53!UBERON:0002616;2.49e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001896,1.41e-12,3;UBERON:0005290,1.41e-12,3;UBERON:0010096,1.41e-12,3;UBERON:0007023,1.13e-11,114;UBERON:0000007,6.50e-09,2;UBERON:0001049,8.29e-09,56;UBERON:0005068,8.29e-09,56;UBERON:0006241,8.29e-09,56;UBERON:0007135,8.29e-09,56;UBERON:0000073,7.05e-08,53;UBERON:0002616,7.05e-08,53;UBERON:0001017,2.22e-07,81 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0.136874425072884,0.251085279189606,0.305653622991805,0.410502947249729,0.236132343941038,1.57345710739562,0.383829398097213,0.77408061658038,0,0,0,0.0774672005803016,0.142169232487422,0,0,0,0.868043482863407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1384259382189,1.76171156811282,0.382273228125229,0,0,0.526768169550154,1.180258620683,1.96505381374582,1.64481199199607,0,0.651844533267181,0.473447805734733,0,0.111410456885174,0.294605907474837,0.443067789167242,0.812411591295047,0.25618263945135,0.130059347559878,0,0,0,0.741432815810302,1.87278579662799,3.1360657141493,0.113309342697566,1.53288197440768,1.37450978193052,3.03623630423403,0.318565414324097,0,0,0.301150238155546,0.383959833463255,0,0,0,2.01606743224732,1.87208137048455,2.89648807765598,0,0,0,0,0,0,0,0,0.283604451492204,0,0,8.51363990735132,0,0.370784442784429,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0.648119116109707,0,0,0,0.463721619900307,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0.414656231081544,0.720599767084807,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97030760201927,1.2937654491571,2.05348858047597,0.254094624222463,2.60279707715243,0.773288812777695,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308061348417659,0.784349769176855,0,0.73886140225013,0,0,0,0,0.270946437543853,0.501689773854853,0,0,0.223874754722178,0,0,0,0,0.325378394664303,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0.379473173765715,0,0,0,0,0.188287601553558,0,0,0,0,0,1.52927441428475,0,0.238231775457789,0.411362273086194,0,0,0,0.213648142254946,0,0,0.185803175125719,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,1.66849141711908,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0.844016498463076,0,0,0,2.59022384726391,0,1.25966373927138,0.102268682502155,0.123084805461069,0,0,0,1.02314474045374,0,0,0,0,0.74214478529481,1.99613798001194,0,0.0874599999961957,0,0,0,0.945550727071745,1.37897349296586,0,0.347249989866585,0.885741385813839,1.08536794762867,0,0.221158519862449,0,0.87754158861589,0,0,0.0769502585037971,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0.282706142867882,0,0,0,0,0,0,0.104421949505455,1.48282492557489,0,0,0,0,0,0.394584402849391,0,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0.284609546029793,0,0,0,0,2.09672001890436,0,0,0,0,0,0,0,0,0,0.569797163602908,0,0,0.213452994739353,0,0,0.114536596165916,0.857974989309823,0,0,0,0.135904206073614,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0.0787831823072236,0,0,0,0.254019996197353,0,0.817220436669454,0,0,0,0,0,1.33649024647654,0,1.33969702408637,1.78345599658994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.79339561045614,0,0,1.28144895081234,4.71612915298998,0,0,0.395223263795889,0,0,0,0,0,0,0.471162288750703,0,0.488105059607853,0.751145584238999,5.16068276121064,1.10929051536852,1.1177352529449,0,0.124980407962107,0,0,0,0,0.724605143054126,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0.310525913752519,0,0,0,0,0,0,0,0,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0.414775308455192,0,0,0.163565394255844,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0.80057074828547,0,0,1.15612605173627,0,0.159633859057151,0.41023272848151,0.252071696221718,0.691572524642179,0.322951291263702,0,0,0,0,0,0,0,0.198916222116275,1.27857558193737,0,0,0,0,0.147856086217045,1.08060135389431,0,1.03343398250592,0.443910671357348,0,0,0,0,0,0.535701835878287,0,1.82089681270989,1.13831095675649,0,0,0,0.40781839786099,0.72350050919134,0,0,0.078493092850514,0.471346769748006,0.280272163313789,0,0.647782773655864,0.9555033757741,0.285906176706625,0.158013611732727,0,0,0,0,0,0.691259661814092,0,0,0.170426809518315,0,0,0,0,0.335566295393377,0.098150233615243,0.121917924982269,0,0,0,0,0.467878926924211,0.397901550322736,0.594600453887843,0,0.219881033490858,0.452888530700021,0.0771741581079447,0.218559560503957,1.88126918544609,0,0,0.196308467114945,0,2.113278637917,0,0,0.0644578879735772,0.0999411559249289,0,0,0,0,0,0,0.157771562193185,1.35982980381829,0.872701380680755,0,0,0,0,0.126166424835079,0.109265571963696,0.380095503034311,0,0,0.0918948995348449,0.50141507858475,8.86610769153401,18.4895249807763,0.829169439458779,0.20686599172379,1.27940389140589,0.714193294391221,0,0,0,0.0636471582781649,0.202117188958219,0,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| ||
|short_description=p2@RTDR1 | |||
}} | }} |
Latest revision as of 08:39, 19 September 2015
Short description: | p2@RTDR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RTDR1_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 49bp_to_NM_014433, uc002zwt.2, uc010gtv.1_5end |
EntrezGene: | RTDR1 |
HGNC: | 13437 |
UniProt: | Q9UHP6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
natural killer cell | 4.34e-13 | 3 |
pro-NK cell | 4.34e-13 | 3 |
CD4-positive, alpha-beta T cell | 5.28e-11 | 6 |
mature alpha-beta T cell | 2.36e-10 | 18 |
alpha-beta T cell | 2.36e-10 | 18 |
immature T cell | 2.36e-10 | 18 |
mature T cell | 2.36e-10 | 18 |
immature alpha-beta T cell | 2.36e-10 | 18 |
lymphoid lineage restricted progenitor cell | 8.39e-09 | 52 |
lymphocyte | 1.37e-08 | 53 |
common lymphoid progenitor | 1.37e-08 | 53 |
T cell | 3.53e-07 | 25 |
pro-T cell | 3.53e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 1.41e-12 | 3 |
myelencephalon | 1.41e-12 | 3 |
future myelencephalon | 1.41e-12 | 3 |
adult organism | 1.13e-11 | 114 |
pituitary gland | 6.50e-09 | 2 |
neural tube | 8.29e-09 | 56 |
neural rod | 8.29e-09 | 56 |
future spinal cord | 8.29e-09 | 56 |
neural keel | 8.29e-09 | 56 |
regional part of nervous system | 7.05e-08 | 53 |
regional part of brain | 7.05e-08 | 53 |
central nervous system | 2.22e-07 | 81 |