FFCP PHASE1:Hg19::chrX:123480155..123480178,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4068 | |EntrezGene=4068 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10820 | |HGNC=10820 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=7bp_to_uc004euf.3,uc004eug.3,uc004euh.3,uc004eui.3,uc010nqw.2_5end | |association_with_transcript=7bp_to_uc004euf.3,uc004eug.3,uc004euh.3,uc004eui.3,uc010nqw.2_5end | ||
|cluster_id=chrX:123480155..123480178,+ | |||
|coexpression_cluster_id=C386 | |coexpression_cluster_id=C386 | ||
|description=CAGE_peak_7_at_SH2D1A_5end | |description=CAGE_peak_7_at_SH2D1A_5end | ||
|id=chrX:123480155..123480178,+ | |id=chrX:123480155..123480178,+ | ||
|ontology_enrichment_celltype=CL:0000084;3.56e-10;25 | |ontology_enrichment_celltype=CL:0000084!7.93e-27!25;CL:0000827!7.93e-27!25;CL:0000838!4.31e-16!52;CL:0000542!9.88e-16!53;CL:0000051!9.88e-16!53;CL:0000080!6.27e-14!6;CL:0000791!1.20e-12!18;CL:0000789!1.20e-12!18;CL:0002420!1.20e-12!18;CL:0002419!1.20e-12!18;CL:0000790!1.20e-12!18;CL:0000988!8.48e-12!182;CL:0000625!5.15e-11!11;CL:0000037!3.11e-09!172;CL:0000566!3.11e-09!172;CL:0000738!1.15e-08!140;CL:0002087!2.24e-08!119;CL:0002032!1.00e-07!165;CL:0000837!1.00e-07!165;CL:0002031!7.13e-07!124 | ||
| | |ontology_enrichment_celltype_v019=CL:0000084;3.56e-10;25 | ||
|ontology_enrichment_disease=DOID:0060060;1.65e-16;1!DOID:4960;1.65e-16;1!DOID:0060061;1.65e-16;1!DOID:0070004;1.65e-16;1!DOID:8691;1.65e-16;1!DOID:2531;3.62e-12;51!DOID:0060083;3.62e-12;51!DOID:1240;1.72e-07;39!DOID:0060058;4.39e-07;10 | |ontology_enrichment_celltype_v019_2=CL:0000084,3.08e-10,25;CL:0000827,3.08e-10,25;CL:0000988,1.09e-07,177;CL:0000838,1.88e-07,52;CL:0000542,2.61e-07,53;CL:0000051,2.61e-07,53 | ||
|ontology_enrichment_uberon=UBERON:0002370;6.42e-09;2!UBERON:0005058;6.42e-09;2!UBERON:0009113;6.42e-09;2!UBERON:0002390;2.08e-07;32!UBERON:0002331;5.26e-07;10 | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:2531!2.58e-10!51;DOID:0060083!2.58e-10!51;DOID:1240!2.41e-07!39;DOID:4960!9.81e-07!1;DOID:0070004!9.81e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:0060060;1.65e-16;1!DOID:4960;1.65e-16;1!DOID:0060061;1.65e-16;1!DOID:0070004;1.65e-16;1!DOID:8691;1.65e-16;1!DOID:2531;3.62e-12;51!DOID:0060083;3.62e-12;51!DOID:1240;1.72e-07;39!DOID:0060058;4.39e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.02e-18,51;DOID:0060083,1.02e-18,51;DOID:4960,1.04e-16,1;DOID:0070004,1.04e-16,1;DOID:0060060,1.21e-16,1;DOID:0060061,1.21e-16,1;DOID:8691,1.21e-16,1;DOID:1240,6.21e-10,39;DOID:0060058,4.13e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0002370!2.54e-12!4;UBERON:0005058!2.54e-12!4;UBERON:0009113!2.54e-12!4;UBERON:0003295!2.54e-12!4;UBERON:0005562!2.54e-12!4;UBERON:0000178!8.99e-12!15;UBERON:0000179!8.99e-12!15;UBERON:0000463!8.99e-12!15;UBERON:0003351!2.31e-08!6;UBERON:0001042!2.77e-08!10;UBERON:0009145!2.77e-08!10;UBERON:0006562!1.55e-07!11;UBERON:0004177!3.17e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;6.42e-09;2!UBERON:0005058;6.42e-09;2!UBERON:0009113;6.42e-09;2!UBERON:0002390;2.08e-07;32!UBERON:0002331;5.26e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,5.11e-07,10;UBERON:0000358,5.11e-07,10;UBERON:0000307,5.11e-07,10;UBERON:0000091,5.11e-07,10;UBERON:0000087,5.11e-07,10;UBERON:0007010,5.11e-07,10;UBERON:0007806,5.11e-07,10;UBERON:0008780,5.11e-07,10;UBERON:0005728,5.11e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0.334231370655521,0,0,0,0.384273959177026,0.780356085359269,0,1.10540007114339,0.579606171470105,0.14828656316206,0,1.04535523804977,0.339928028092699,0,0,0,0,0.651083453856419,0,0.150575119077773,0.255973222308837,0,0,0,0,0.802320587350522,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.18048339180511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.896681151948218,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.952927101831156,0.411362273086194,0,0,0,0,0,0,0,0,1.70740424036194,7.81188736371229,0,5.55365573383863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11362469558097,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.2631957834884,0,0,0,0,0.335643173951685,0,0,0,0,0,0,0,0,0,0.593042257361244,1.35920332841153,1.35748534357092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39991177098451,0,1.54993481694734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.710478008196067,1.11734485732544,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0.334231370655521,0,0,0,0.384273959177026,0.780356085359269,0,1.10540007114339,0.579606171470105,0.14828656316206,0,1.04535523804977,0.339928028092699,0,0,0,0,0.651083453856419,0,0.150575119077773,0.255973222308837,0,0,0,0,0.802320587350522,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.18048339180511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.896681151948218,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.952927101831156,0.411362273086194,0,0,0,0,0,0,0,0,1.70740424036194,7.81188736371229,0,5.55365573383863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11362469558097,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.2631957834884,0,0,0,0,0.335643173951685,0,0,0,0,0,0,0,0,0,0.593042257361244,1.35920332841153,1.35748534357092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39991177098451,0,1.54993481694734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.710478008196067,1.11734485732544,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p7@SH2D1A | |short_description=p7@SH2D1A | ||
}} | }} |
Latest revision as of 08:01, 19 September 2015
Short description: | p7@SH2D1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SH2D1A_5end |
Coexpression cluster: | C386_chronic_acute_Hodgkin_NK_thymus_liver_blood |
Association with transcript: | 7bp_to_uc004euf.3, uc004eug.3, uc004euh.3, uc004eui.3, uc010nqw.2_5end |
EntrezGene: | SH2D1A |
HGNC: | 10820 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 3.08e-10 | 25 |
pro-T cell | 3.08e-10 | 25 |
hematopoietic cell | 1.09e-07 | 177 |
lymphoid lineage restricted progenitor cell | 1.88e-07 | 52 |
lymphocyte | 2.61e-07 | 53 |
common lymphoid progenitor | 2.61e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 5.11e-07 | 10 |
blastocyst | 5.11e-07 | 10 |
blastula | 5.11e-07 | 10 |
bilaminar disc | 5.11e-07 | 10 |
inner cell mass | 5.11e-07 | 10 |
cleaving embryo | 5.11e-07 | 10 |
connecting stalk | 5.11e-07 | 10 |
inner cell mass derived epiblast | 5.11e-07 | 10 |
extraembryonic mesoderm | 5.11e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.02e-18 | 51 |
immune system cancer | 1.02e-18 | 51 |
bone marrow cancer | 1.04e-16 | 1 |
myeloma | 1.04e-16 | 1 |
non-Hodgkin lymphoma | 1.21e-16 | 1 |
cutaneous T cell lymphoma | 1.21e-16 | 1 |
mycosis fungoides | 1.21e-16 | 1 |
leukemia | 6.21e-10 | 39 |
lymphoma | 4.13e-07 | 10 |