FFCP PHASE1:Hg19::chr4:89513578..89513670,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8916 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4876 | |||
|TSSclassifier=strong | |||
|UniProt=Q8IXX3,C9JFL2,C9J6Z1,Q15034 | |||
|association_with_transcript=0bp_to_ENST00000407637,ENST00000422770,ENST00000431413,NM_014606,uc003hrv.2,uc003hrw.1,uc011cdn.1_5end | |||
|cluster_id=chr4:89513578..89513670,+ | |||
|coexpression_cluster_id=C468 | |||
|description=CAGE_peak_1_at_HERC3_5end | |||
|id=chr4:89513578..89513670,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.55e-28!140;CL:0000037!1.08e-24!172;CL:0000566!1.08e-24!172;CL:0002031!1.40e-24!124;CL:0000766!9.39e-24!76;CL:0002032!7.53e-23!165;CL:0000837!7.53e-23!165;CL:0002087!1.58e-22!119;CL:0000557!4.46e-20!71;CL:0000839!6.73e-20!70;CL:0002057!9.94e-20!42;CL:0000988!1.63e-19!182;CL:0002009!8.13e-18!65;CL:0000860!1.10e-17!45;CL:0000763!1.11e-17!112;CL:0000049!1.11e-17!112;CL:0002194!1.95e-17!63;CL:0000576!1.95e-17!63;CL:0000040!1.95e-17!63;CL:0000559!1.95e-17!63;CL:0000791!4.87e-07!18;CL:0000789!4.87e-07!18;CL:0002420!4.87e-07!18;CL:0002419!4.87e-07!18;CL:0000790!4.87e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.07e-13;33!CL:0002057;1.07e-13;33!CL:0000576;1.31e-12;48!CL:0000473;2.20e-12;39!CL:0000234;2.20e-12;39!CL:0000766;7.08e-12;69!CL:0002087;1.43e-07;104!CL:0000738;2.66e-07;136!CL:0000791;5.89e-07;18!CL:0000789;5.89e-07;18!CL:0002419;5.89e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.83e-30,136;CL:0002031,2.75e-26,120;CL:0000766,3.52e-26,72;CL:0000037,4.83e-26,168;CL:0002087,3.53e-24,115;CL:0002032,3.63e-24,161;CL:0000837,3.63e-24,161;CL:0000557,2.52e-22,67;CL:0000839,3.72e-22,66;CL:0000988,5.35e-21,177;CL:0000473,2.30e-20,48;CL:0000234,2.30e-20,48;CL:0002009,5.17e-20,61;CL:0000860,9.91e-20,42;CL:0002057,9.91e-20,42;CL:0002194,1.19e-19,59;CL:0000576,1.19e-19,59;CL:0000040,1.19e-19,59;CL:0000559,1.19e-19,59;CL:0000763,3.96e-19,108;CL:0000049,3.96e-19,108;CL:0000791,4.86e-07,18;CL:0000789,4.86e-07,18;CL:0002420,4.86e-07,18;CL:0002419,4.86e-07,18;CL:0000790,4.86e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002057;1.92e-14;42!CL:0000790;5.89e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.84e-37!115;UBERON:0002390!6.81e-20!102;UBERON:0003061!6.81e-20!102;UBERON:0001049!2.63e-19!57;UBERON:0005068!2.63e-19!57;UBERON:0006241!2.63e-19!57;UBERON:0007135!2.63e-19!57;UBERON:0002780!1.39e-17!41;UBERON:0001890!1.39e-17!41;UBERON:0006240!1.39e-17!41;UBERON:0003080!1.88e-17!42;UBERON:0002193!9.97e-17!112;UBERON:0002371!2.68e-16!80;UBERON:0002616!8.16e-15!59;UBERON:0001893!3.36e-14!34;UBERON:0002020!4.96e-14!34;UBERON:0003528!4.96e-14!34;UBERON:0001474!6.31e-14!86;UBERON:0002791!9.75e-14!33;UBERON:0001869!3.37e-13!32;UBERON:0004765!3.87e-13!101;UBERON:0001434!3.87e-13!101;UBERON:0000955!2.36e-12!69;UBERON:0006238!2.36e-12!69;UBERON:0001017!8.69e-12!82;UBERON:0002619!1.41e-11!22;UBERON:0005743!2.50e-11!86;UBERON:0001950!1.04e-10!20;UBERON:0000956!1.69e-09!25;UBERON:0000203!1.69e-09!25;UBERON:0003075!5.35e-09!86;UBERON:0007284!5.35e-09!86;UBERON:0002405!9.85e-09!115;UBERON:0000073!1.45e-08!94;UBERON:0001016!1.45e-08!94;UBERON:0002346!1.57e-07!90;UBERON:0003056!3.02e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;5.34e-13;41!UBERON:0001890;5.34e-13;41!UBERON:0001893;3.28e-12;34!UBERON:0002791;4.18e-12;32!UBERON:0003528;4.85e-12;34!UBERON:0002020;4.85e-12;34!UBERON:0001869;5.23e-12;32!UBERON:0002619;1.24e-11;22!UBERON:0000073;4.06e-11;53!UBERON:0002616;4.06e-11;53!UBERON:0001950;9.21e-11;20!UBERON:0007023;2.44e-10;114!UBERON:0000956;1.57e-09;25!UBERON:0000203;1.57e-09;25!UBERON:0000955;4.84e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.19e-37,114;UBERON:0002390,1.32e-21,98;UBERON:0003061,1.32e-21,98;UBERON:0001049,2.30e-19,56;UBERON:0005068,2.30e-19,56;UBERON:0006241,2.30e-19,56;UBERON:0007135,2.30e-19,56;UBERON:0000073,1.96e-18,53;UBERON:0002616,1.96e-18,53;UBERON:0002193,3.89e-18,108;UBERON:0002371,4.56e-18,76;UBERON:0002780,1.39e-17,41;UBERON:0001890,1.39e-17,41;UBERON:0003080,1.39e-17,41;UBERON:0006240,1.39e-17,41;UBERON:0001474,2.15e-15,82;UBERON:0002405,5.93e-15,93;UBERON:0001893,3.36e-14,34;UBERON:0003528,4.95e-14,34;UBERON:0002020,4.95e-14,34;UBERON:0004765,5.59e-14,90;UBERON:0001434,2.53e-13,100;UBERON:0002791,2.70e-13,32;UBERON:0001869,3.36e-13,32;UBERON:0000955,2.63e-12,68;UBERON:0006238,2.63e-12,68;UBERON:0001017,1.02e-11,81;UBERON:0002619,1.41e-11,22;UBERON:0001950,1.04e-10,20;UBERON:0000956,1.69e-09,25;UBERON:0000203,1.69e-09,25;UBERON:0003075,1.96e-09,82;UBERON:0007284,1.96e-09,82;UBERON:0001016,8.64e-09,89;UBERON:0002346,7.22e-08,86;UBERON:0010371,8.83e-08,104;UBERON:0003056,2.20e-07,61 | |||
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| |||
|short_description=p1@HERC3 | |||
}} |
Latest revision as of 07:46, 19 September 2015
Short description: | p1@HERC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HERC3_5end |
Coexpression cluster: | C468_Neutrophils_Eosinophils_cerebellum_occipital_Whole_temporal_parietal |
Association with transcript: | 0bp_to_ENST00000407637, ENST00000422770, ENST00000431413, NM_014606, uc003hrv.2, uc003hrw.1, uc011cdn.1_5end |
EntrezGene: | HERC3 |
HGNC: | 4876 |
UniProt: | Q8IXX3C9JFL2C9J6Z1Q15034 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.83e-30 | 136 |
hematopoietic lineage restricted progenitor cell | 2.75e-26 | 120 |
myeloid leukocyte | 3.52e-26 | 72 |
hematopoietic stem cell | 4.83e-26 | 168 |
nongranular leukocyte | 3.53e-24 | 115 |
hematopoietic oligopotent progenitor cell | 3.63e-24 | 161 |
hematopoietic multipotent progenitor cell | 3.63e-24 | 161 |
granulocyte monocyte progenitor cell | 2.52e-22 | 67 |
myeloid lineage restricted progenitor cell | 3.72e-22 | 66 |
hematopoietic cell | 5.35e-21 | 177 |
defensive cell | 2.30e-20 | 48 |
phagocyte | 2.30e-20 | 48 |
macrophage dendritic cell progenitor | 5.17e-20 | 61 |
classical monocyte | 9.91e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.91e-20 | 42 |
monopoietic cell | 1.19e-19 | 59 |
monocyte | 1.19e-19 | 59 |
monoblast | 1.19e-19 | 59 |
promonocyte | 1.19e-19 | 59 |
myeloid cell | 3.96e-19 | 108 |
common myeloid progenitor | 3.96e-19 | 108 |
mature alpha-beta T cell | 4.86e-07 | 18 |
alpha-beta T cell | 4.86e-07 | 18 |
immature T cell | 4.86e-07 | 18 |
mature T cell | 4.86e-07 | 18 |
immature alpha-beta T cell | 4.86e-07 | 18 |