FFCP PHASE1:Hg19::chr5:95066730..95066782,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22836 | |EntrezGene=22836 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18757 | |HGNC=18757 | ||
|TSSclassifier=strong | |||
|UniProt=D6RG10,O94955 | |UniProt=D6RG10,O94955 | ||
|association_with_transcript=-67bp_to_ENST00000506817,NM_014899,uc003kll.2,uc003klm.2_5end | |association_with_transcript=-67bp_to_ENST00000506817,NM_014899,uc003kll.2,uc003klm.2_5end | ||
|cluster_id=chr5:95066730..95066782,+ | |||
|coexpression_cluster_id=C1085 | |||
|description=CAGE_peak_4_at_RHOBTB3_5end | |description=CAGE_peak_4_at_RHOBTB3_5end | ||
|id=chr5:95066730..95066782,+ | |id=chr5:95066730..95066782,+ | ||
|ontology_enrichment_celltype=CL:0000055!6.04e-24!180;CL:0000680!6.06e-15!57;CL:0000056!6.06e-15!57;CL:0000355!6.06e-15!57;CL:0000187!1.66e-14!54;CL:0000183!2.14e-13!59;CL:0000393!1.78e-12!60;CL:0000211!1.78e-12!60;CL:0000192!5.01e-12!42;CL:0000514!5.01e-12!42;CL:0000057!1.99e-11!75;CL:0000222!1.45e-10!119;CL:0000359!2.93e-09!32;CL:0000136!5.19e-07!15 | |ontology_enrichment_celltype=CL:0000055!6.04e-24!180;CL:0000680!6.06e-15!57;CL:0000056!6.06e-15!57;CL:0000355!6.06e-15!57;CL:0000187!1.66e-14!54;CL:0000183!2.14e-13!59;CL:0000393!1.78e-12!60;CL:0000211!1.78e-12!60;CL:0000192!5.01e-12!42;CL:0000514!5.01e-12!42;CL:0000057!1.99e-11!75;CL:0000222!1.45e-10!119;CL:0000359!2.93e-09!32;CL:0000136!5.19e-07!15 | ||
|ontology_enrichment_celltype_v019=CL:0000192;9.86e-10;43!CL:0000187;1.66e-09;55!CL:0000359;5.12e-09;32!CL:0000393;3.70e-08;61!CL:0000211;3.70e-08;61!CL:0000136;7.43e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,2.93e-16,58;CL:0000056,2.93e-16,58;CL:0000355,2.93e-16,58;CL:0000187,8.22e-16,55;CL:0000393,9.42e-14,61;CL:0000211,9.42e-14,61;CL:0000192,3.02e-13,43;CL:0000514,3.02e-13,43;CL:0000057,1.06e-11,76;CL:0000222,6.01e-11,121;CL:0000359,8.39e-10,32;CL:0000136,3.32e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000514;9.86e-10;43!CL:0000355;7.41e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!5.79e-19!365;UBERON:0000481!5.66e-15!347;UBERON:0000477!8.22e-15!286;UBERON:0000483!1.27e-14!309;UBERON:0000119!1.47e-14!312;UBERON:0005256!1.29e-13!143;UBERON:0000914!1.30e-13!83;UBERON:0002329!1.30e-13!83;UBERON:0003077!1.30e-13!83;UBERON:0003059!1.30e-13!83;UBERON:0007282!1.30e-13!83;UBERON:0009618!1.30e-13!83;UBERON:0007285!1.30e-13!83;UBERON:0004111!1.52e-13!241;UBERON:0001134!3.02e-13!61;UBERON:0002036!3.02e-13!61;UBERON:0003082!3.02e-13!61;UBERON:0004290!6.66e-13!70;UBERON:0002385!6.66e-13!63;UBERON:0001015!6.66e-13!63;UBERON:0000383!6.66e-13!63;UBERON:0000025!1.33e-11!194;UBERON:0000490!5.04e-11!138;UBERON:0002100!1.35e-10!216;UBERON:0000486!1.52e-10!82;UBERON:0000468!2.04e-10!659;UBERON:0003914!9.65e-10!118;UBERON:0004872!2.31e-09!84;UBERON:0000467!8.81e-08!625;UBERON:0000480!1.11e-07!626;UBERON:0001637!1.34e-07!42;UBERON:0003509!1.34e-07!42;UBERON:0004572!1.34e-07!42;UBERON:0002049!1.91e-07!79;UBERON:0007798!1.91e-07!79 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000483,2.17e-15,306;UBERON:0000119,2.54e-15,309;UBERON:0007524,9.40e-15,73;UBERON:0001134,1.44e-14,62;UBERON:0002036,1.44e-14,62;UBERON:0003082,1.44e-14,62;UBERON:0003077,2.22e-14,72;UBERON:0007285,2.22e-14,72;UBERON:0002329,3.67e-14,71;UBERON:0003059,3.67e-14,71;UBERON:0007282,3.67e-14,71;UBERON:0004290,3.67e-14,71;UBERON:0009618,3.67e-14,71;UBERON:0002385,5.66e-14,64;UBERON:0001015,5.66e-14,64;UBERON:0000383,5.66e-14,64;UBERON:0007503,6.42e-14,78;UBERON:0003104,1.84e-13,160;UBERON:0009142,1.84e-13,160;UBERON:0005256,3.48e-13,122;UBERON:0004111,1.79e-12,240;UBERON:0000490,1.58e-11,148;UBERON:0000486,5.60e-11,83;UBERON:0000025,6.74e-11,192;UBERON:0004872,2.42e-09,83;UBERON:0003914,2.80e-09,117;UBERON:0010314,4.07e-09,132;UBERON:0002100,1.73e-08,199;UBERON:0001637,1.72e-07,42;UBERON:0003509,1.72e-07,42;UBERON:0004572,1.72e-07,42;UBERON:0002049,3.70e-07,78;UBERON:0007798,3.70e-07,78 | |||
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| ||
|short_description=p4@RHOBTB3 | |short_description=p4@RHOBTB3 | ||
}} | }} |
Latest revision as of 07:44, 19 September 2015
Short description: | p4@RHOBTB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RHOBTB3_5end |
Coexpression cluster: | C1085_liposarcoma_placenta_Olfactory_amniotic_Hair_mesothelioma_Smooth |
Association with transcript: | -67bp_to_ENST00000506817, NM_014899, uc003kll.2, uc003klm.2_5end |
EntrezGene: | RHOBTB3 |
HGNC: | 18757 |
UniProt: | D6RG10O94955 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 2.93e-16 | 58 |
myoblast | 2.93e-16 | 58 |
multi-potent skeletal muscle stem cell | 2.93e-16 | 58 |
muscle cell | 8.22e-16 | 55 |
electrically responsive cell | 9.42e-14 | 61 |
electrically active cell | 9.42e-14 | 61 |
smooth muscle cell | 3.02e-13 | 43 |
smooth muscle myoblast | 3.02e-13 | 43 |
fibroblast | 1.06e-11 | 76 |
mesodermal cell | 6.01e-11 | 121 |
vascular associated smooth muscle cell | 8.39e-10 | 32 |
fat cell | 3.32e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
epithelium | 2.17e-15 | 306 |
cell layer | 2.54e-15 | 309 |
dense mesenchyme tissue | 9.40e-15 | 73 |
skeletal muscle tissue | 1.44e-14 | 62 |
striated muscle tissue | 1.44e-14 | 62 |
myotome | 1.44e-14 | 62 |
paraxial mesoderm | 2.22e-14 | 72 |
presumptive paraxial mesoderm | 2.22e-14 | 72 |
somite | 3.67e-14 | 71 |
presomitic mesoderm | 3.67e-14 | 71 |
presumptive segmental plate | 3.67e-14 | 71 |
dermomyotome | 3.67e-14 | 71 |
trunk paraxial mesoderm | 3.67e-14 | 71 |
muscle tissue | 5.66e-14 | 64 |
musculature | 5.66e-14 | 64 |
musculature of body | 5.66e-14 | 64 |
epithelial vesicle | 6.42e-14 | 78 |
mesenchyme | 1.84e-13 | 160 |
entire embryonic mesenchyme | 1.84e-13 | 160 |
trunk mesenchyme | 3.48e-13 | 122 |
anatomical conduit | 1.79e-12 | 240 |
unilaminar epithelium | 1.58e-11 | 148 |
multilaminar epithelium | 5.60e-11 | 83 |
tube | 6.74e-11 | 192 |
splanchnic layer of lateral plate mesoderm | 2.42e-09 | 83 |
epithelial tube | 2.80e-09 | 117 |
structure with developmental contribution from neural crest | 4.07e-09 | 132 |
trunk | 1.73e-08 | 199 |
artery | 1.72e-07 | 42 |
arterial blood vessel | 1.72e-07 | 42 |
arterial system | 1.72e-07 | 42 |
vasculature | 3.70e-07 | 78 |
vascular system | 3.70e-07 | 78 |