FFCP PHASE1:Hg19::chrX:122318406..122318417,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2892 | |EntrezGene=2892 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4573 | |HGNC=4573 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000479118_5end | |association_with_transcript=0bp_to_ENST00000479118_5end | ||
|cluster_id=chrX:122318406..122318417,+ | |||
|coexpression_cluster_id=C16 | |||
|description=CAGE_peak_17_at_GRIA3_5end | |description=CAGE_peak_17_at_GRIA3_5end | ||
|id=chrX:122318406..122318417,+ | |id=chrX:122318406..122318417,+ | ||
|ontology_enrichment_celltype=CL:0002620!1.24e-11!23;CL:0000057!3.93e-11!75;CL:0002334!1.96e-09!12 | |ontology_enrichment_celltype=CL:0002620!1.24e-11!23;CL:0000057!3.93e-11!75;CL:0002334!1.96e-09!12 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0000358;2.42e-50;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.96e-22!57;UBERON:0005068!3.96e-22!57;UBERON:0006241!3.96e-22!57;UBERON:0007135!3.96e-22!57;UBERON:0001869!4.00e-22!32;UBERON:0002780!1.09e-20!41;UBERON:0001890!1.09e-20!41;UBERON:0006240!1.09e-20!41;UBERON:0001893!1.41e-20!34;UBERON:0003080!4.43e-20!42;UBERON:0002616!3.50e-19!59;UBERON:0001017!7.01e-19!82;UBERON:0002791!7.38e-19!33;UBERON:0000955!2.64e-18!69;UBERON:0006238!2.64e-18!69;UBERON:0002020!3.45e-18!34;UBERON:0003528!3.45e-18!34;UBERON:0005743!1.15e-17!86;UBERON:0002619!2.95e-17!22;UBERON:0001950!3.04e-16!20;UBERON:0000073!2.63e-15!94;UBERON:0001016!2.63e-15!94;UBERON:0000956!6.87e-15!25;UBERON:0000203!6.87e-15!25;UBERON:0001872!1.03e-13!5;UBERON:0003075!1.04e-13!86;UBERON:0007284!1.04e-13!86;UBERON:0003056!1.13e-13!61;UBERON:0002346!8.25e-13!90;UBERON:0007023!1.02e-11!115;UBERON:0000200!4.01e-11!6;UBERON:0000475!2.88e-10!365;UBERON:0000033!3.68e-10!123;UBERON:0002199!1.09e-09!45;UBERON:0002416!1.09e-09!45;UBERON:0000153!2.26e-09!129;UBERON:0007811!2.26e-09!129;UBERON:0002771!5.58e-09!3;UBERON:0002097!2.39e-08!40;UBERON:0004121!1.62e-07!169;UBERON:0002420!2.49e-07!9;UBERON:0007245!2.49e-07!9;UBERON:0010009!2.49e-07!9;UBERON:0010011!2.49e-07!9;UBERON:0000454!2.49e-07!9;UBERON:0000924!3.52e-07!173;UBERON:0006601!3.52e-07!173 | |ontology_enrichment_uberon=UBERON:0001049!3.96e-22!57;UBERON:0005068!3.96e-22!57;UBERON:0006241!3.96e-22!57;UBERON:0007135!3.96e-22!57;UBERON:0001869!4.00e-22!32;UBERON:0002780!1.09e-20!41;UBERON:0001890!1.09e-20!41;UBERON:0006240!1.09e-20!41;UBERON:0001893!1.41e-20!34;UBERON:0003080!4.43e-20!42;UBERON:0002616!3.50e-19!59;UBERON:0001017!7.01e-19!82;UBERON:0002791!7.38e-19!33;UBERON:0000955!2.64e-18!69;UBERON:0006238!2.64e-18!69;UBERON:0002020!3.45e-18!34;UBERON:0003528!3.45e-18!34;UBERON:0005743!1.15e-17!86;UBERON:0002619!2.95e-17!22;UBERON:0001950!3.04e-16!20;UBERON:0000073!2.63e-15!94;UBERON:0001016!2.63e-15!94;UBERON:0000956!6.87e-15!25;UBERON:0000203!6.87e-15!25;UBERON:0001872!1.03e-13!5;UBERON:0003075!1.04e-13!86;UBERON:0007284!1.04e-13!86;UBERON:0003056!1.13e-13!61;UBERON:0002346!8.25e-13!90;UBERON:0007023!1.02e-11!115;UBERON:0000200!4.01e-11!6;UBERON:0000475!2.88e-10!365;UBERON:0000033!3.68e-10!123;UBERON:0002199!1.09e-09!45;UBERON:0002416!1.09e-09!45;UBERON:0000153!2.26e-09!129;UBERON:0007811!2.26e-09!129;UBERON:0002771!5.58e-09!3;UBERON:0002097!2.39e-08!40;UBERON:0004121!1.62e-07!169;UBERON:0002420!2.49e-07!9;UBERON:0007245!2.49e-07!9;UBERON:0010009!2.49e-07!9;UBERON:0010011!2.49e-07!9;UBERON:0000454!2.49e-07!9;UBERON:0000924!3.52e-07!173;UBERON:0006601!3.52e-07!173 | ||
|ontology_enrichment_uberon_v019=UBERON:0002771;4.32e-26;2!UBERON:0001950;5.11e-22;20!UBERON:0002619;3.39e-20;22!UBERON:0000956;5.50e-18;25!UBERON:0000203;5.50e-18;25!UBERON:0001893;6.45e-15;34!UBERON:0002791;2.66e-13;32!UBERON:0001869;2.66e-13;32!UBERON:0003528;1.70e-12;34!UBERON:0002020;1.70e-12;34!UBERON:0001872;3.42e-11;5!UBERON:0002021;3.42e-11;5!UBERON:0000200;1.22e-09;6!UBERON:0001871;1.89e-08;6!UBERON:0002780;1.77e-07;41!UBERON:0001890;1.77e-07;41!UBERON:0000073;3.64e-07;53!UBERON:0002616;3.64e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002771,4.32e-26,2;UBERON:0001950,5.11e-22,20;UBERON:0002619,3.39e-20,22;UBERON:0000956,5.50e-18,25;UBERON:0000203,5.50e-18,25;UBERON:0002791,2.21e-14,32;UBERON:0001869,2.21e-14,32;UBERON:0003528,1.29e-13,34;UBERON:0002020,1.29e-13,34;UBERON:0001893,1.29e-13,34;UBERON:0002780,1.67e-11,41;UBERON:0001890,1.67e-11,41;UBERON:0003080,1.67e-11,41;UBERON:0006240,1.67e-11,41;UBERON:0002021,3.26e-11,5;UBERON:0001872,3.60e-11,5;UBERON:0000200,1.22e-09,6;UBERON:0000073,3.82e-09,53;UBERON:0002616,3.82e-09,53;UBERON:0001049,1.04e-08,56;UBERON:0005068,1.04e-08,56;UBERON:0006241,1.04e-08,56;UBERON:0007135,1.04e-08,56;UBERON:0001871,1.89e-08,6;UBERON:0003056,4.50e-08,61;UBERON:0000955,3.04e-07,68;UBERON:0006238,3.04e-07,68 | |||
|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0.123766352960047,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0.538168907066586,0,0.211931901159562,0,0.103052529238439,0.257640540045629,0.18611685633159,0.168776332241266,0.194874010322397,0.252433774244115,0.0920498986422993,0,0.355009592516614,0.201504196455281,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0.410952645100767,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0.535286966391485,0,0,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0.128139149255701,0,0.321707842287215,0,0.154209693802656,0.177561725313127,0.0821271560138091,0,0.116210378459959,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0.0890320356467374,0,0.192190067365106,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0,0,0,0.102268682502155,0,0.311039587661807,0,0,0,0,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0.272406812223151,0,0,0.415440338029185,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.00307686098049,0.250381861413,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,1.41696576325585,0,0,0,0,0.484426936895553,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.202612753855184,0.781078098613847,0.413373593002368,0.0634158101939068,1.09394961803644,0,0,0,0,0,0.336283722218824,0,0,0,0,0,0.0679697329768317,0.131545547125698,0,0,0,0.471346769748006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34640942403454,0,0,0,0,0 | |phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0.123766352960047,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0.538168907066586,0,0.211931901159562,0,0.103052529238439,0.257640540045629,0.18611685633159,0.168776332241266,0.194874010322397,0.252433774244115,0.0920498986422993,0,0.355009592516614,0.201504196455281,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0.410952645100767,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0.535286966391485,0,0,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0.128139149255701,0,0.321707842287215,0,0.154209693802656,0.177561725313127,0.0821271560138091,0,0.116210378459959,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0.0890320356467374,0,0.192190067365106,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0,0,0,0.102268682502155,0,0.311039587661807,0,0,0,0,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0.272406812223151,0,0,0.415440338029185,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.00307686098049,0.250381861413,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,1.41696576325585,0,0,0,0,0.484426936895553,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.202612753855184,0.781078098613847,0.413373593002368,0.0634158101939068,1.09394961803644,0,0,0,0,0,0.336283722218824,0,0,0,0,0,0.0679697329768317,0.131545547125698,0,0,0,0.471346769748006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34640942403454,0,0,0,0,0 | ||
|short_description=p17@GRIA3 | |short_description=p17@GRIA3 | ||
}} | }} |
Latest revision as of 07:20, 19 September 2015
Short description: | p17@GRIA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_GRIA3_5end |
Coexpression cluster: | C16_medial_amygdala_occipital_parietal_olfactory_putamen_brain |
Association with transcript: | 0bp_to_ENST00000479118_5end |
EntrezGene: | GRIA3 |
HGNC: | 4573 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
middle temporal gyrus | 4.32e-26 | 2 |
neocortex | 5.11e-22 | 20 |
regional part of cerebral cortex | 3.39e-20 | 22 |
cerebral cortex | 5.50e-18 | 25 |
pallium | 5.50e-18 | 25 |
regional part of telencephalon | 2.21e-14 | 32 |
cerebral hemisphere | 2.21e-14 | 32 |
brain grey matter | 1.29e-13 | 34 |
gray matter | 1.29e-13 | 34 |
telencephalon | 1.29e-13 | 34 |
regional part of forebrain | 1.67e-11 | 41 |
forebrain | 1.67e-11 | 41 |
anterior neural tube | 1.67e-11 | 41 |
future forebrain | 1.67e-11 | 41 |
occipital lobe | 3.26e-11 | 5 |
parietal lobe | 3.60e-11 | 5 |
gyrus | 1.22e-09 | 6 |
regional part of nervous system | 3.82e-09 | 53 |
regional part of brain | 3.82e-09 | 53 |
neural tube | 1.04e-08 | 56 |
neural rod | 1.04e-08 | 56 |
future spinal cord | 1.04e-08 | 56 |
neural keel | 1.04e-08 | 56 |
temporal lobe | 1.89e-08 | 6 |
pre-chordal neural plate | 4.50e-08 | 61 |
brain | 3.04e-07 | 68 |
future brain | 3.04e-07 | 68 |