FFCP PHASE1:Hg19::chr17:27044717..27044742,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=83871 | |EntrezGene=83871 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16519 | |HGNC=16519 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000483554_5end | |association_with_transcript=0bp_to_ENST00000483554_5end | ||
|cluster_id=chr17:27044717..27044742,- | |||
|coexpression_cluster_id=C3621 | |coexpression_cluster_id=C3621 | ||
|description=CAGE_peak_4_at_RAB34_5end | |description=CAGE_peak_4_at_RAB34_5end | ||
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|ontology_enrichment_celltype=CL:0000055!1.15e-28!180;CL:0002321!4.43e-18!248;CL:0000548!2.68e-17!679;CL:0000004!2.68e-17!679;CL:0000255!2.68e-17!679;CL:0000220!2.69e-17!246;CL:0000012!4.40e-17!682;CL:0000183!9.83e-15!59;CL:0000222!1.46e-13!119;CL:0000680!3.67e-13!57;CL:0000056!3.67e-13!57;CL:0000355!3.67e-13!57;CL:0000187!6.26e-13!54;CL:0000393!9.99e-13!60;CL:0000211!9.99e-13!60;CL:0000066!7.47e-12!254;CL:0000057!2.13e-10!75;CL:0000192!1.96e-09!42;CL:0000514!1.96e-09!42;CL:0000144!3.87e-09!625;CL:0000003!8.19e-09!722 | |ontology_enrichment_celltype=CL:0000055!1.15e-28!180;CL:0002321!4.43e-18!248;CL:0000548!2.68e-17!679;CL:0000004!2.68e-17!679;CL:0000255!2.68e-17!679;CL:0000220!2.69e-17!246;CL:0000012!4.40e-17!682;CL:0000183!9.83e-15!59;CL:0000222!1.46e-13!119;CL:0000680!3.67e-13!57;CL:0000056!3.67e-13!57;CL:0000355!3.67e-13!57;CL:0000187!6.26e-13!54;CL:0000393!9.99e-13!60;CL:0000211!9.99e-13!60;CL:0000066!7.47e-12!254;CL:0000057!2.13e-10!75;CL:0000192!1.96e-09!42;CL:0000514!1.96e-09!42;CL:0000144!3.87e-09!625;CL:0000003!8.19e-09!722 | ||
|ontology_enrichment_celltype_v019=CL:0000187;3.31e-08;55!CL:0000393;2.20e-07;61!CL:0000211;2.20e-07;61!CL:0000192;2.77e-07;43 | |ontology_enrichment_celltype_v019=CL:0000187;3.31e-08;55!CL:0000393;2.20e-07;61!CL:0000211;2.20e-07;61!CL:0000192;2.77e-07;43 | ||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.72e-17,250;CL:0000187,8.16e-14,55;CL:0000680,1.03e-13,58;CL:0000056,1.03e-13,58;CL:0000355,1.03e-13,58;CL:0000393,1.45e-13,61;CL:0000211,1.45e-13,61;CL:0000222,1.21e-12,121;CL:0000066,3.08e-11,253;CL:0000192,6.56e-10,43;CL:0000514,6.56e-10,43;CL:0000057,1.70e-09,76 | |||
|ontology_enrichment_development_v019=CL:0000355;8.73e-08;58!CL:0000514;2.77e-07;43 | |ontology_enrichment_development_v019=CL:0000355;8.73e-08;58!CL:0000514;2.77e-07;43 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!1.00e-12!238;UBERON:0009142!1.00e-12!238;UBERON:0000481!1.34e-12!347;UBERON:0000914!1.67e-12!83;UBERON:0002329!1.67e-12!83;UBERON:0003077!1.67e-12!83;UBERON:0003059!1.67e-12!83;UBERON:0007282!1.67e-12!83;UBERON:0009618!1.67e-12!83;UBERON:0007285!1.67e-12!83;UBERON:0005256!4.00e-12!143;UBERON:0004290!7.33e-12!70;UBERON:0000486!9.28e-12!82;UBERON:0002100!1.26e-11!216;UBERON:0001134!3.70e-11!61;UBERON:0002036!3.70e-11!61;UBERON:0003082!3.70e-11!61;UBERON:0000475!9.69e-11!365;UBERON:0002385!1.44e-10!63;UBERON:0001015!1.44e-10!63;UBERON:0000383!1.44e-10!63;UBERON:0000119!7.64e-08!312;UBERON:0000483!1.53e-07!309 | |ontology_enrichment_uberon=UBERON:0003104!1.00e-12!238;UBERON:0009142!1.00e-12!238;UBERON:0000481!1.34e-12!347;UBERON:0000914!1.67e-12!83;UBERON:0002329!1.67e-12!83;UBERON:0003077!1.67e-12!83;UBERON:0003059!1.67e-12!83;UBERON:0007282!1.67e-12!83;UBERON:0009618!1.67e-12!83;UBERON:0007285!1.67e-12!83;UBERON:0005256!4.00e-12!143;UBERON:0004290!7.33e-12!70;UBERON:0000486!9.28e-12!82;UBERON:0002100!1.26e-11!216;UBERON:0001134!3.70e-11!61;UBERON:0002036!3.70e-11!61;UBERON:0003082!3.70e-11!61;UBERON:0000475!9.69e-11!365;UBERON:0002385!1.44e-10!63;UBERON:0001015!1.44e-10!63;UBERON:0000383!1.44e-10!63;UBERON:0000119!7.64e-08!312;UBERON:0000483!1.53e-07!309 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.09e-14,78;UBERON:0003104,1.19e-13,160;UBERON:0009142,1.19e-13,160;UBERON:0007524,5.20e-13,73;UBERON:0002329,6.02e-13,71;UBERON:0003059,6.02e-13,71;UBERON:0007282,6.02e-13,71;UBERON:0004290,6.02e-13,71;UBERON:0009618,6.02e-13,71;UBERON:0000486,1.64e-12,83;UBERON:0003077,1.86e-12,72;UBERON:0007285,1.86e-12,72;UBERON:0001134,6.10e-12,62;UBERON:0002036,6.10e-12,62;UBERON:0003082,6.10e-12,62;UBERON:0002385,5.90e-11,64;UBERON:0001015,5.90e-11,64;UBERON:0000383,5.90e-11,64;UBERON:0005256,2.22e-09,122;UBERON:0002100,4.99e-09,199;UBERON:0000490,5.95e-07,148 | |||
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| ||
|short_description=p4@RAB34 | |short_description=p4@RAB34 | ||
}} | }} |
Latest revision as of 07:03, 19 September 2015
Short description: | p4@RAB34 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RAB34_5end |
Coexpression cluster: | C3621_Hepatic_Renal_Alveolar_Mesenchymal_Trabecular_Smooth_normal |
Association with transcript: | 0bp_to_ENST00000483554_5end |
EntrezGene: | RAB34 |
HGNC: | 16519 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.72e-17 | 250 |
muscle cell | 8.16e-14 | 55 |
muscle precursor cell | 1.03e-13 | 58 |
myoblast | 1.03e-13 | 58 |
multi-potent skeletal muscle stem cell | 1.03e-13 | 58 |
electrically responsive cell | 1.45e-13 | 61 |
electrically active cell | 1.45e-13 | 61 |
mesodermal cell | 1.21e-12 | 121 |
epithelial cell | 3.08e-11 | 253 |
smooth muscle cell | 6.56e-10 | 43 |
smooth muscle myoblast | 6.56e-10 | 43 |
fibroblast | 1.70e-09 | 76 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.09e-14 | 78 |
mesenchyme | 1.19e-13 | 160 |
entire embryonic mesenchyme | 1.19e-13 | 160 |
dense mesenchyme tissue | 5.20e-13 | 73 |
somite | 6.02e-13 | 71 |
presomitic mesoderm | 6.02e-13 | 71 |
presumptive segmental plate | 6.02e-13 | 71 |
dermomyotome | 6.02e-13 | 71 |
trunk paraxial mesoderm | 6.02e-13 | 71 |
multilaminar epithelium | 1.64e-12 | 83 |
paraxial mesoderm | 1.86e-12 | 72 |
presumptive paraxial mesoderm | 1.86e-12 | 72 |
skeletal muscle tissue | 6.10e-12 | 62 |
striated muscle tissue | 6.10e-12 | 62 |
myotome | 6.10e-12 | 62 |
muscle tissue | 5.90e-11 | 64 |
musculature | 5.90e-11 | 64 |
musculature of body | 5.90e-11 | 64 |
trunk mesenchyme | 2.22e-09 | 122 |
trunk | 4.99e-09 | 199 |
unilaminar epithelium | 5.95e-07 | 148 |