FFCP PHASE1:Hg19::chr11:64900812..64900834,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84447 | |EntrezGene=84447 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20738 | |HGNC=20738 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-14bp_to_ENST00000525874_5end | |association_with_transcript=-14bp_to_ENST00000525874_5end | ||
|cluster_id=chr11:64900812..64900834,- | |||
|coexpression_cluster_id=C682 | |||
|description=CAGE_peak_5_at_SYVN1_5end | |description=CAGE_peak_5_at_SYVN1_5end | ||
|id=chr11:64900812..64900834,- | |id=chr11:64900812..64900834,- | ||
|ontology_enrichment_celltype=CL:0000945!8.61e-47!24;CL:0000826!8.61e-47!24;CL:0000236!6.32e-31!14;CL:0000542!5.36e-26!53;CL:0000051!5.36e-26!53;CL:0000838!1.89e-24!52;CL:0002087!1.08e-13!119;CL:0000738!3.29e-10!140;CL:0002031!3.29e-09!124;CL:0000037!8.24e-08!172;CL:0000566!8.24e-08!172;CL:0000817!1.28e-07!3;CL:0000842!6.56e-07!3;CL:0000988!6.82e-07!182 | |ontology_enrichment_celltype=CL:0000945!8.61e-47!24;CL:0000826!8.61e-47!24;CL:0000236!6.32e-31!14;CL:0000542!5.36e-26!53;CL:0000051!5.36e-26!53;CL:0000838!1.89e-24!52;CL:0002087!1.08e-13!119;CL:0000738!3.29e-10!140;CL:0002031!3.29e-09!124;CL:0000037!8.24e-08!172;CL:0000566!8.24e-08!172;CL:0000817!1.28e-07!3;CL:0000842!6.56e-07!3;CL:0000988!6.82e-07!182 | ||
|ontology_enrichment_celltype_v019=CL:0000945;6.80e-87;24!CL:0000236;1.27e-57;13!CL:0000542;3.57e-26;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,5.90e-87,24;CL:0000826,5.90e-87,24;CL:0000236,1.49e-61,14;CL:0000542,4.34e-40,53;CL:0000051,4.34e-40,53;CL:0000838,3.24e-37,52;CL:0002087,7.98e-17,115;CL:0000817,7.01e-14,3;CL:0000738,2.23e-13,136;CL:0002031,5.73e-13,120;CL:0000037,8.50e-10,168;CL:0000785,8.60e-10,2;CL:0000955,8.60e-10,2;CL:0000818,8.60e-10,2;CL:0000954,8.60e-10,2;CL:0000816,8.60e-10,2;CL:0002032,1.97e-09,161;CL:0000837,1.97e-09,161;CL:0000988,5.00e-09,177 | |||
|ontology_enrichment_development_v019=CL:0000051;3.57e-26;53!UBERON:0004872;1.72e-10;7!CL:0000954;8.59e-10;2 | |||
|ontology_enrichment_disease=DOID:0060058!5.67e-08!10 | |ontology_enrichment_disease=DOID:0060058!5.67e-08!10 | ||
|ontology_enrichment_disease_v019=DOID:0060058;1.78e-11;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,1.80e-11,10 | |||
|ontology_enrichment_uberon=UBERON:0007023!6.54e-16!115;UBERON:0000178!7.94e-08!15;UBERON:0000179!7.94e-08!15;UBERON:0000463!7.94e-08!15;UBERON:0004177!8.29e-08!7;UBERON:0002106!9.45e-08!3;UBERON:0004854!9.45e-08!3;UBERON:0009034!9.45e-08!3;UBERON:0002095!9.45e-08!3;UBERON:0004782!9.45e-08!3;UBERON:0003281!9.45e-08!3;UBERON:0009664!9.45e-08!3;UBERON:0002296!9.45e-08!3;UBERON:0005602!9.45e-08!3;UBERON:0001179!9.45e-08!3;UBERON:0006293!9.45e-08!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;3.94e-14;3!UBERON:0001829;2.41e-09;2!UBERON:0004177;1.17e-08;5!UBERON:0005057;1.17e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,3.76e-14,3;UBERON:0004854,3.76e-14,3;UBERON:0009034,3.76e-14,3;UBERON:0002095,3.76e-14,3;UBERON:0004782,3.76e-14,3;UBERON:0003281,3.76e-14,3;UBERON:0009664,3.76e-14,3;UBERON:0002296,3.76e-14,3;UBERON:0005602,3.76e-14,3;UBERON:0001179,3.76e-14,3;UBERON:0006293,3.76e-14,3;UBERON:0001829,3.05e-09,2 | |||
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| ||
|short_description=p5@SYVN1 | |short_description=p5@SYVN1 | ||
}} | }} |
Latest revision as of 06:31, 19 September 2015
Short description: | p5@SYVN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SYVN1_5end |
Coexpression cluster: | C682_Burkitt_lymphoma_CD19_appendix_tonsil_spleen_diffuse |
Association with transcript: | -14bp_to_ENST00000525874_5end |
EntrezGene: | SYVN1 |
HGNC: | 20738 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 5.90e-87 | 24 |
pro-B cell | 5.90e-87 | 24 |
B cell | 1.49e-61 | 14 |
lymphocyte | 4.34e-40 | 53 |
common lymphoid progenitor | 4.34e-40 | 53 |
lymphoid lineage restricted progenitor cell | 3.24e-37 | 52 |
nongranular leukocyte | 7.98e-17 | 115 |
precursor B cell | 7.01e-14 | 3 |
leukocyte | 2.23e-13 | 136 |
hematopoietic lineage restricted progenitor cell | 5.73e-13 | 120 |
hematopoietic stem cell | 8.50e-10 | 168 |
mature B cell | 8.60e-10 | 2 |
pre-B-II cell | 8.60e-10 | 2 |
transitional stage B cell | 8.60e-10 | 2 |
small pre-B-II cell | 8.60e-10 | 2 |
immature B cell | 8.60e-10 | 2 |
hematopoietic oligopotent progenitor cell | 1.97e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.97e-09 | 161 |
hematopoietic cell | 5.00e-09 | 177 |
Ontology term | p-value | n |
---|---|---|
spleen | 3.76e-14 | 3 |
gastrointestinal system mesentery | 3.76e-14 | 3 |
stomach region | 3.76e-14 | 3 |
mesentery | 3.76e-14 | 3 |
gastrointestinal system serosa | 3.76e-14 | 3 |
mesentery of stomach | 3.76e-14 | 3 |
gut mesentery | 3.76e-14 | 3 |
dorsal mesentery | 3.76e-14 | 3 |
dorsal mesogastrium | 3.76e-14 | 3 |
peritoneal cavity | 3.76e-14 | 3 |
spleen primordium | 3.76e-14 | 3 |
major salivary gland | 3.05e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 1.80e-11 | 10 |