FFCP PHASE1:Hg19::chr17:26903900..26903933,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=230 | |EntrezGene=230 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=418 | |HGNC=418 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=A8MVZ9 | |UniProt=A8MVZ9 | ||
|association_with_transcript=0bp_to_ENST00000395319_5end | |association_with_transcript=0bp_to_ENST00000395319_5end | ||
|cluster_id=chr17:26903900..26903933,- | |||
|coexpression_cluster_id=C3 | |coexpression_cluster_id=C3 | ||
|description=CAGE_peak_1_at_ALDOC_5end | |description=CAGE_peak_1_at_ALDOC_5end | ||
Latest revision as of 06:26, 19 September 2015
| Short description: | p1@ALDOC |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_ALDOC_5end |
| Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
| Association with transcript: | 0bp_to_ENST00000395319_5end |
| EntrezGene: | ALDOC |
| HGNC: | 418 |
| UniProt: | A8MVZ9 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@ALDOC |
|---|
0
100
200
300
400
500
600
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| neural plate | 2.19e-22 | 82 |
| presumptive neural plate | 2.19e-22 | 82 |
| neural tube | 3.21e-22 | 56 |
| neural rod | 3.21e-22 | 56 |
| future spinal cord | 3.21e-22 | 56 |
| neural keel | 3.21e-22 | 56 |
| regional part of nervous system | 1.58e-20 | 53 |
| regional part of brain | 1.58e-20 | 53 |
| neurectoderm | 2.50e-20 | 86 |
| central nervous system | 2.81e-17 | 81 |
Showing 1 to 10 of 49 entries
