FFCP PHASE1:Hg19::chr12:54718904..54718936,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:54718904..54718936,+ to FFCP PHASE1:Hg19::chr12:54718904..54718936,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=22818 | |EntrezGene=22818 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2243 | |HGNC=2243 | ||
|TSSclassifier=strong | |||
|UniProt=P61923,B4DHZ0,B4DDX8,F8VWL5,F8W651,F8VUC5,F8VYZ4,F8W156,F8VVA7,F8VS17,F8VYE0 | |UniProt=P61923,B4DHZ0,B4DDX8,F8VWL5,F8W651,F8VUC5,F8VYZ4,F8W156,F8VVA7,F8VS17,F8VYE0 | ||
|association_with_transcript=0bp_to_ENST00000262061,ENST00000416254,ENST00000455864,ENST00000549043,ENST00000549116,ENST00000550027,ENST00000550171,ENST00000551412,ENST00000551779,ENST00000551962,ENST00000552218,ENST00000552362,ENST00000553231,NM_016057,uc001sfs.1,uc001sft.2,uc009znm.1,uc010sot.1_5end | |||
|cluster_id=chr12:54718904..54718936,+ | |||
|description=CAGE_peak_1_at_COPZ1_5end | |||
|id=chr12:54718904..54718936,+ | |||
|ontology_enrichment_celltype=CL:0000548!5.26e-29!679;CL:0000004!5.26e-29!679;CL:0000255!5.26e-29!679;CL:0000012!7.03e-28!682;CL:0000003!1.54e-19!722;CL:0000144!1.63e-19!625;CL:0000220!4.74e-19!246;CL:0002321!9.38e-19!248;CL:0000222!1.04e-18!119;CL:0000066!2.86e-17!254;CL:0002371!2.63e-16!591;CL:0000183!3.75e-15!59;CL:0000055!1.53e-14!180;CL:0000192!6.67e-13!42;CL:0000514!6.67e-13!42;CL:0000187!1.22e-12!54;CL:0000680!4.74e-12!57;CL:0000056!4.74e-12!57;CL:0000355!4.74e-12!57;CL:0000063!6.09e-11!578;CL:0000393!1.56e-10!60;CL:0000211!1.56e-10!60;CL:0000359!4.35e-09!32;CL:0000213!1.86e-07!57;CL:0000215!1.86e-07!57;CL:1000497!5.66e-07!18;CL:0002518!5.66e-07!18;CL:0000057!9.37e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000192;7.40e-09;43!CL:0000359;1.23e-08;32!CL:0000134;5.48e-08;55!CL:1000497;1.75e-07;17!CL:0002518;1.75e-07;17!CL:0000187;4.31e-07;55!CL:0000048;6.38e-07;58!CL:0000723;6.62e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,6.21e-19,250;CL:0000222,8.16e-19,121;CL:0000066,2.13e-17,253;CL:0000192,1.70e-12,43;CL:0000514,1.70e-12,43;CL:0000187,2.59e-12,55;CL:0000680,9.45e-12,58;CL:0000056,9.45e-12,58;CL:0000355,9.45e-12,58;CL:0000393,2.82e-10,61;CL:0000211,2.82e-10,61;CL:0000359,4.35e-09,32;CL:0000213,9.47e-08,58;CL:0000215,9.47e-08,58;CL:1000497,1.82e-07,17;CL:0002518,1.82e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000514;7.40e-09;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!7.40e-14!238;UBERON:0009142!7.40e-14!238;UBERON:0005256!1.92e-12!143;UBERON:0000914!8.62e-12!83;UBERON:0002329!8.62e-12!83;UBERON:0003077!8.62e-12!83;UBERON:0003059!8.62e-12!83;UBERON:0007282!8.62e-12!83;UBERON:0009618!8.62e-12!83;UBERON:0007285!8.62e-12!83;UBERON:0002100!1.21e-11!216;UBERON:0000486!3.68e-11!82;UBERON:0004290!4.25e-11!70;UBERON:0001134!7.53e-10!61;UBERON:0002036!7.53e-10!61;UBERON:0003082!7.53e-10!61;UBERON:0000490!1.82e-09!138;UBERON:0002049!2.09e-09!79;UBERON:0007798!2.09e-09!79;UBERON:0003914!5.18e-09!118;UBERON:0002385!5.29e-09!63;UBERON:0001015!5.29e-09!63;UBERON:0000383!5.29e-09!63;UBERON:0000055!7.51e-08!69;UBERON:0004872!2.21e-07!84;UBERON:0000481!2.38e-07!347;UBERON:0001737!2.98e-07!9;UBERON:0001637!3.67e-07!42;UBERON:0003509!3.67e-07!42;UBERON:0004572!3.67e-07!42;UBERON:0001048!7.82e-07!168;UBERON:0000926!7.98e-07!448;UBERON:0004120!7.98e-07!448;UBERON:0006603!7.98e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.00e-07;9!UBERON:0001557;3.00e-07;9!UBERON:0000072;7.28e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,3.13e-13,78;UBERON:0002100,2.86e-11,199;UBERON:0000486,5.98e-11,83;UBERON:0002329,7.35e-11,71;UBERON:0003059,7.35e-11,71;UBERON:0007282,7.35e-11,71;UBERON:0004290,7.35e-11,71;UBERON:0009618,7.35e-11,71;UBERON:0003104,8.00e-11,160;UBERON:0009142,8.00e-11,160;UBERON:0000490,1.51e-10,148;UBERON:0007524,2.05e-10,73;UBERON:0003077,2.55e-10,72;UBERON:0007285,2.55e-10,72;UBERON:0005256,1.28e-09,122;UBERON:0001134,1.30e-09,62;UBERON:0002036,1.30e-09,62;UBERON:0003082,1.30e-09,62;UBERON:0002049,1.44e-09,78;UBERON:0007798,1.44e-09,78;UBERON:0003914,3.77e-09,117;UBERON:0002385,8.66e-09,64;UBERON:0001015,8.66e-09,64;UBERON:0000383,8.66e-09,64;UBERON:0000055,5.27e-08,68;UBERON:0004872,1.66e-07,83;UBERON:0001737,2.98e-07,9;UBERON:0001637,3.67e-07,42;UBERON:0003509,3.67e-07,42;UBERON:0004572,3.67e-07,42;UBERON:0001048,4.34e-07,160 | |||
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| ||
|short_description=p1@COPZ1 | |||
}} | }} |
Latest revision as of 05:49, 19 September 2015
Short description: | p1@COPZ1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_COPZ1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000262061, ENST00000416254, ENST00000455864, ENST00000549043, ENST00000549116, ENST00000550027, ENST00000550171, ENST00000551412, ENST00000551779, ENST00000551962, ENST00000552218, ENST00000552362, ENST00000553231, NM_016057, uc001sfs.1, uc001sft.2, uc009znm.1, uc010sot.1_5end |
EntrezGene: | COPZ1 |
HGNC: | 2243 |
UniProt: | P61923B4DHZ0B4DDX8F8VWL5F8W651F8VUC5F8VYZ4F8W156F8VVA7F8VS17F8VYE0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 6.21e-19 | 250 |
mesodermal cell | 8.16e-19 | 121 |
epithelial cell | 2.13e-17 | 253 |
smooth muscle cell | 1.70e-12 | 43 |
smooth muscle myoblast | 1.70e-12 | 43 |
muscle cell | 2.59e-12 | 55 |
muscle precursor cell | 9.45e-12 | 58 |
myoblast | 9.45e-12 | 58 |
multi-potent skeletal muscle stem cell | 9.45e-12 | 58 |
electrically responsive cell | 2.82e-10 | 61 |
electrically active cell | 2.82e-10 | 61 |
vascular associated smooth muscle cell | 4.35e-09 | 32 |
lining cell | 9.47e-08 | 58 |
barrier cell | 9.47e-08 | 58 |
kidney cell | 1.82e-07 | 17 |
kidney epithelial cell | 1.82e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 3.13e-13 | 78 |
trunk | 2.86e-11 | 199 |
multilaminar epithelium | 5.98e-11 | 83 |
somite | 7.35e-11 | 71 |
presomitic mesoderm | 7.35e-11 | 71 |
presumptive segmental plate | 7.35e-11 | 71 |
dermomyotome | 7.35e-11 | 71 |
trunk paraxial mesoderm | 7.35e-11 | 71 |
mesenchyme | 8.00e-11 | 160 |
entire embryonic mesenchyme | 8.00e-11 | 160 |
unilaminar epithelium | 1.51e-10 | 148 |
dense mesenchyme tissue | 2.05e-10 | 73 |
paraxial mesoderm | 2.55e-10 | 72 |
presumptive paraxial mesoderm | 2.55e-10 | 72 |
trunk mesenchyme | 1.28e-09 | 122 |
skeletal muscle tissue | 1.30e-09 | 62 |
striated muscle tissue | 1.30e-09 | 62 |
myotome | 1.30e-09 | 62 |
vasculature | 1.44e-09 | 78 |
vascular system | 1.44e-09 | 78 |
epithelial tube | 3.77e-09 | 117 |
muscle tissue | 8.66e-09 | 64 |
musculature | 8.66e-09 | 64 |
musculature of body | 8.66e-09 | 64 |
vessel | 5.27e-08 | 68 |
splanchnic layer of lateral plate mesoderm | 1.66e-07 | 83 |
larynx | 2.98e-07 | 9 |
artery | 3.67e-07 | 42 |
arterial blood vessel | 3.67e-07 | 42 |
arterial system | 3.67e-07 | 42 |
primordium | 4.34e-07 | 160 |