FFCP PHASE1:Hg19::chr18:28742652..28742696,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1823 | |EntrezGene=1823 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3035 | |HGNC=3035 | ||
|TSSclassifier=strong | |||
|UniProt=Q08554,Q9HB00 | |UniProt=Q08554,Q9HB00 | ||
|association_with_transcript=122bp_to_ENST00000257197,ENST00000257198,NM_004948,NM_024421,uc002kwm.2,uc002kwn.2_5end | |association_with_transcript=122bp_to_ENST00000257197,ENST00000257198,NM_004948,NM_024421,uc002kwm.2,uc002kwn.2_5end | ||
|cluster_id=chr18:28742652..28742696,- | |||
|coexpression_cluster_id=C202 | |coexpression_cluster_id=C202 | ||
|description=CAGE_peak_1_at_DSC1_5end | |description=CAGE_peak_1_at_DSC1_5end | ||
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|ontology_enrichment_celltype=CL:0000791!1.78e-12!18;CL:0000789!1.78e-12!18;CL:0002420!1.78e-12!18;CL:0002419!1.78e-12!18;CL:0000790!1.78e-12!18;CL:0000625!7.73e-12!11;CL:0000084!2.93e-08!25;CL:0000827!2.93e-08!25;CL:0000842!3.69e-07!3 | |ontology_enrichment_celltype=CL:0000791!1.78e-12!18;CL:0000789!1.78e-12!18;CL:0002420!1.78e-12!18;CL:0002419!1.78e-12!18;CL:0000790!1.78e-12!18;CL:0000625!7.73e-12!11;CL:0000084!2.93e-08!25;CL:0000827!2.93e-08!25;CL:0000842!3.69e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0001014;1.84e-15;2!CL:0001016;1.84e-15;2!CL:0000312;2.78e-13;5!CL:0000622;2.90e-13;5!CL:0000362;1.44e-12;9!CL:0000240;3.73e-11;6!CL:0000311;3.73e-11;6!CL:0000079;3.73e-11;6!CL:0000237;3.73e-11;6!CL:0000154;3.86e-11;6!CL:0002623;1.28e-10;3!CL:0002159;3.99e-08;14!CL:0000150;1.40e-07;9 | |ontology_enrichment_celltype_v019=CL:0001014;1.84e-15;2!CL:0001016;1.84e-15;2!CL:0000312;2.78e-13;5!CL:0000622;2.90e-13;5!CL:0000362;1.44e-12;9!CL:0000240;3.73e-11;6!CL:0000311;3.73e-11;6!CL:0000079;3.73e-11;6!CL:0000237;3.73e-11;6!CL:0000154;3.86e-11;6!CL:0002623;1.28e-10;3!CL:0002159;3.99e-08;14!CL:0000150;1.40e-07;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0001014,1.77e-15,2;CL:0001016,1.77e-15,2;CL:0000622,3.03e-13,5;CL:0000312,3.16e-13,5;CL:0000362,1.63e-12,9;CL:0000154,4.00e-11,6;CL:0000240,4.14e-11,6;CL:0000311,4.14e-11,6;CL:0000079,4.14e-11,6;CL:0000237,4.14e-11,6;CL:0000036,4.14e-11,6;CL:0000357,4.14e-11,6;CL:0000114,4.14e-11,6;CL:0002623,1.28e-10,3;CL:0002159,4.30e-08,14;CL:0000150,1.43e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000357;3.73e-11;6!CL:0000114;3.73e-11;6!UBERON:0000358;1.31e-08;1!UBERON:0004874;1.52e-08;1 | |ontology_enrichment_development_v019=CL:0000357;3.73e-11;6!CL:0000114;3.73e-11;6!UBERON:0000358;1.31e-08;1!UBERON:0004874;1.52e-08;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3151;1.69e-08;1!DOID:3149;1.69e-08;1 | |ontology_enrichment_disease_v019=DOID:3151;1.69e-08;1!DOID:3149;1.69e-08;1 | ||
|ontology_enrichment_disease_v019_2=DOID:3151,1.75e-08,1;DOID:3149,1.75e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.20e-17!115;UBERON:0002619!7.94e-15!22;UBERON:0001950!2.30e-14!20;UBERON:0000956!1.07e-12!25;UBERON:0000203!1.07e-12!25;UBERON:0001869!2.83e-12!32;UBERON:0001893!2.44e-11!34;UBERON:0004121!1.74e-10!169;UBERON:0002791!2.91e-10!33;UBERON:0000924!5.22e-10!173;UBERON:0006601!5.22e-10!173;UBERON:0002020!7.30e-10!34;UBERON:0003528!7.30e-10!34;UBERON:0000200!8.05e-09!6;UBERON:0002780!8.71e-09!41;UBERON:0001890!8.71e-09!41;UBERON:0006240!8.71e-09!41;UBERON:0003080!1.71e-08!42;UBERON:0000153!2.06e-08!129;UBERON:0007811!2.06e-08!129;UBERON:0000033!1.01e-07!123;UBERON:0002021!1.58e-07!5;UBERON:0002771!2.92e-07!3 | |ontology_enrichment_uberon=UBERON:0007023!1.20e-17!115;UBERON:0002619!7.94e-15!22;UBERON:0001950!2.30e-14!20;UBERON:0000956!1.07e-12!25;UBERON:0000203!1.07e-12!25;UBERON:0001869!2.83e-12!32;UBERON:0001893!2.44e-11!34;UBERON:0004121!1.74e-10!169;UBERON:0002791!2.91e-10!33;UBERON:0000924!5.22e-10!173;UBERON:0006601!5.22e-10!173;UBERON:0002020!7.30e-10!34;UBERON:0003528!7.30e-10!34;UBERON:0000200!8.05e-09!6;UBERON:0002780!8.71e-09!41;UBERON:0001890!8.71e-09!41;UBERON:0006240!8.71e-09!41;UBERON:0003080!1.71e-08!42;UBERON:0000153!2.06e-08!129;UBERON:0007811!2.06e-08!129;UBERON:0000033!1.01e-07!123;UBERON:0002021!1.58e-07!5;UBERON:0002771!2.92e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0001003;1.48e-11;15!UBERON:0007376;1.48e-11;15!UBERON:0001723;2.98e-10;3!UBERON:0001033;2.98e-10;3!UBERON:0007029;1.05e-08;1!UBERON:0000989;1.52e-08;1!UBERON:0008811;1.52e-08;1!UBERON:0000014;3.51e-08;4!UBERON:0002135;5.43e-08;1!UBERON:0001950;7.96e-08;20!UBERON:0002619;3.97e-07;22 | |ontology_enrichment_uberon_v019=UBERON:0001003;1.48e-11;15!UBERON:0007376;1.48e-11;15!UBERON:0001723;2.98e-10;3!UBERON:0001033;2.98e-10;3!UBERON:0007029;1.05e-08;1!UBERON:0000989;1.52e-08;1!UBERON:0008811;1.52e-08;1!UBERON:0000014;3.51e-08;4!UBERON:0002135;5.43e-08;1!UBERON:0001950;7.96e-08;20!UBERON:0002619;3.97e-07;22 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001003,1.62e-11,15;UBERON:0007376,1.62e-11,15;UBERON:0007383,1.62e-11,15;UBERON:0001723,2.98e-10,3;UBERON:0001033,2.98e-10,3;UBERON:0010056,2.98e-10,3;UBERON:0007029,1.05e-08,1;UBERON:0000989,1.52e-08,1;UBERON:0008811,1.52e-08,1;UBERON:0006258,1.52e-08,1;UBERON:0005876,1.52e-08,1;UBERON:0004874,1.52e-08,1;UBERON:0000014,3.58e-08,4;UBERON:0004121,4.17e-08,171;UBERON:0000924,4.17e-08,171;UBERON:0006601,4.17e-08,171;UBERON:0002135,5.43e-08,1;UBERON:0001950,7.73e-08,20;UBERON:0002619,3.87e-07,22 | |||
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| ||
|short_description=p1@DSC1 | |short_description=p1@DSC1 | ||
}} | }} |
Latest revision as of 04:47, 19 September 2015
Short description: | p1@DSC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DSC1_5end |
Coexpression cluster: | C202_salivary_skin_penis_tongue_uterus_cervical_immature |
Association with transcript: | 122bp_to_ENST00000257197, ENST00000257198, NM_004948, NM_024421, uc002kwm.2, uc002kwn.2_5end |
EntrezGene: | DSC1 |
HGNC: | 3035 |
UniProt: | Q08554Q9HB00 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD1a-positive Langerhans cell | 1.77e-15 | 2 |
immature CD1a-positive Langerhans cell | 1.77e-15 | 2 |
acinar cell | 3.03e-13 | 5 |
keratinocyte | 3.16e-13 | 5 |
epidermal cell | 1.63e-12 | 9 |
protein secreting cell | 4.00e-11 | 6 |
stratified squamous epithelial cell | 4.14e-11 | 6 |
keratin accumulating cell | 4.14e-11 | 6 |
stratified epithelial cell | 4.14e-11 | 6 |
keratinizing barrier epithelial cell | 4.14e-11 | 6 |
epithelial fate stem cell | 4.14e-11 | 6 |
stratified epithelial stem cell | 4.14e-11 | 6 |
surface ectodermal cell | 4.14e-11 | 6 |
acinar cell of salivary gland | 1.28e-10 | 3 |
general ecto-epithelial cell | 4.30e-08 | 14 |
glandular epithelial cell | 1.43e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
skin epidermis | 1.62e-11 | 15 |
outer epithelium | 1.62e-11 | 15 |
enveloping layer of ectoderm | 1.62e-11 | 15 |
tongue | 2.98e-10 | 3 |
gustatory system | 2.98e-10 | 3 |
future tongue | 2.98e-10 | 3 |
surface | 1.05e-08 | 1 |
penis | 1.52e-08 | 1 |
intromittent organ | 1.52e-08 | 1 |
lateral plate mesenchyme | 1.52e-08 | 1 |
undifferentiated genital tubercle | 1.52e-08 | 1 |
somatopleure | 1.52e-08 | 1 |
zone of skin | 3.58e-08 | 4 |
ectoderm-derived structure | 4.17e-08 | 171 |
ectoderm | 4.17e-08 | 171 |
presumptive ectoderm | 4.17e-08 | 171 |
mitral valve | 5.43e-08 | 1 |
neocortex | 7.73e-08 | 20 |
regional part of cerebral cortex | 3.87e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 1.75e-08 | 1 |
keratoacanthoma | 1.75e-08 | 1 |