FFCP PHASE1:Hg19::chr3:57113314..57113350,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=50650 | |EntrezGene=50650 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=683 | |HGNC=683 | ||
|TSSclassifier=strong | |||
|UniProt=C9J609,Q9NR81 | |UniProt=C9J609,Q9NR81 | ||
|association_with_transcript=0bp_to_ENST00000338458,ENST00000468727,NM_001128615,uc003dih.2_5end | |association_with_transcript=0bp_to_ENST00000338458,ENST00000468727,NM_001128615,uc003dih.2_5end | ||
|cluster_id=chr3:57113314..57113350,- | |||
|description=CAGE_peak_5_at_ARHGEF3_5end | |description=CAGE_peak_5_at_ARHGEF3_5end | ||
|id=chr3:57113314..57113350,- | |id=chr3:57113314..57113350,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!4.37e-20!511;UBERON:0000468!1.70e-17!659;UBERON:0000922!2.43e-16!612;UBERON:0000480!1.11e-15!626;UBERON:0000467!3.05e-15!625;UBERON:0002050!1.21e-14!605;UBERON:0005423!1.21e-14!605;UBERON:0000923!3.06e-14!604;UBERON:0005291!3.06e-14!604;UBERON:0006598!3.06e-14!604;UBERON:0002532!3.06e-14!604;UBERON:0007023!6.87e-10!115;UBERON:0000153!5.99e-09!129;UBERON:0007811!5.99e-09!129;UBERON:0000033!8.38e-09!123;UBERON:0005743!3.00e-08!86;UBERON:0004121!8.06e-08!169;UBERON:0001017!1.27e-07!82;UBERON:0000481!2.45e-07!347;UBERON:0003075!5.53e-07!86;UBERON:0007284!5.53e-07!86;UBERON:0000924!5.64e-07!173;UBERON:0006601!5.64e-07!173;UBERON:0000073!6.34e-07!94;UBERON:0001016!6.34e-07!94 | |ontology_enrichment_uberon=UBERON:0000062!4.37e-20!511;UBERON:0000468!1.70e-17!659;UBERON:0000922!2.43e-16!612;UBERON:0000480!1.11e-15!626;UBERON:0000467!3.05e-15!625;UBERON:0002050!1.21e-14!605;UBERON:0005423!1.21e-14!605;UBERON:0000923!3.06e-14!604;UBERON:0005291!3.06e-14!604;UBERON:0006598!3.06e-14!604;UBERON:0002532!3.06e-14!604;UBERON:0007023!6.87e-10!115;UBERON:0000153!5.99e-09!129;UBERON:0007811!5.99e-09!129;UBERON:0000033!8.38e-09!123;UBERON:0005743!3.00e-08!86;UBERON:0004121!8.06e-08!169;UBERON:0001017!1.27e-07!82;UBERON:0000481!2.45e-07!347;UBERON:0003075!5.53e-07!86;UBERON:0007284!5.53e-07!86;UBERON:0000924!5.64e-07!173;UBERON:0006601!5.64e-07!173;UBERON:0000073!6.34e-07!94;UBERON:0001016!6.34e-07!94 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000922,4.20e-10,592;UBERON:0007023,4.64e-10,114;UBERON:0002050,1.28e-08,564;UBERON:0005423,2.08e-08,581;UBERON:0000923,2.72e-08,560;UBERON:0010316,2.72e-08,560;UBERON:0005291,2.72e-08,560;UBERON:0006598,2.72e-08,560;UBERON:0010317,2.72e-08,560;UBERON:0002532,2.72e-08,560;UBERON:0002075,9.79e-07,18 | |||
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| ||
|short_description=p5@ARHGEF3 | |short_description=p5@ARHGEF3 | ||
}} | }} |
Latest revision as of 04:02, 19 September 2015
Short description: | p5@ARHGEF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_ARHGEF3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000338458, ENST00000468727, NM_001128615, uc003dih.2_5end |
EntrezGene: | ARHGEF3 |
HGNC: | 683 |
UniProt: | C9J609Q9NR81 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryo | 4.20e-10 | 592 |
adult organism | 4.64e-10 | 114 |
embryonic structure | 1.28e-08 | 564 |
developing anatomical structure | 2.08e-08 | 581 |
germ layer | 2.72e-08 | 560 |
germ layer / neural crest | 2.72e-08 | 560 |
embryonic tissue | 2.72e-08 | 560 |
presumptive structure | 2.72e-08 | 560 |
germ layer / neural crest derived structure | 2.72e-08 | 560 |
epiblast (generic) | 2.72e-08 | 560 |
viscus | 9.79e-07 | 18 |