FFCP PHASE1:Hg19::chr3:57113281..57113312,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=50650 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=683 | |||
|TSSclassifier=strong | |||
|UniProt=C9J5K8 | |||
|association_with_transcript=0bp_to_ENST00000468466_5end | |||
|cluster_id=chr3:57113281..57113312,- | |||
|description=CAGE_peak_4_at_ARHGEF3_5end | |||
|id=chr3:57113281..57113312,- | |||
|ontology_enrichment_celltype=CL:0000066!1.36e-08!254 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000223,4.03e-09,58;CL:0000066,2.57e-07,253;CL:0002076,9.23e-07,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!4.81e-15!106;DOID:0050687!2.21e-13!143;DOID:299!4.92e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:299;1.68e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.09e-14,106;DOID:0050687,3.90e-11,143;DOID:299,1.96e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0000062!3.52e-19!511;UBERON:0000468!4.08e-16!659;UBERON:0000922!1.25e-15!612;UBERON:0000480!5.83e-15!626;UBERON:0000467!1.19e-14!625;UBERON:0002050!6.36e-14!605;UBERON:0005423!6.36e-14!605;UBERON:0000923!1.44e-13!604;UBERON:0005291!1.44e-13!604;UBERON:0006598!1.44e-13!604;UBERON:0002532!1.44e-13!604;UBERON:0001007!3.25e-10!155;UBERON:0001555!3.25e-10!155;UBERON:0007026!3.25e-10!155;UBERON:0005743!3.32e-10!86;UBERON:0004119!9.95e-10!169;UBERON:0000925!9.95e-10!169;UBERON:0006595!9.95e-10!169;UBERON:0007023!1.38e-09!115;UBERON:0000481!1.65e-09!347;UBERON:0000153!1.87e-09!129;UBERON:0007811!1.87e-09!129;UBERON:0000033!3.72e-09!123;UBERON:0001017!3.95e-09!82;UBERON:0004921!6.96e-09!129;UBERON:0004185!6.96e-09!129;UBERON:0004121!8.21e-09!169;UBERON:0000073!8.67e-09!94;UBERON:0001016!8.67e-09!94;UBERON:0000475!2.98e-08!365;UBERON:0000924!4.15e-08!173;UBERON:0006601!4.15e-08!173;UBERON:0000077!8.86e-08!130;UBERON:0005409!2.08e-07!35;UBERON:0003075!2.86e-07!86;UBERON:0007284!2.86e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011216,4.13e-11,223;UBERON:0007023,1.40e-09,114;UBERON:0000922,2.64e-09,592;UBERON:0005423,6.54e-08,581;UBERON:0001007,2.30e-07,145;UBERON:0001555,2.30e-07,145;UBERON:0007026,2.30e-07,145;UBERON:0004921,8.21e-07,118 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.140954404095971,0,0.446961094427288,0,0,0,1.30592814099919,0.245733936501509,0.697801167972428,0.218441372130172,0.263766978228454,1.23766352960047,0.331397375727916,0,0,0,0,0.492484232307152,0.204000691244253,1.25381888591235,8.87331560106276,3.28498620174922,5.27279086298172,0.152826811495903,0.0821005894499457,0.157421562627358,0,0.383829398097213,0,0,0.30120591877825,2.21852406100073,0,0,0,0,0.401088894940283,0,0.223915474239924,1.29557466407592,0.77272670290256,0.872389432677388,1.13362783106643,1.21292030593908,1.85943229524548,1.6446715520873,0.309706370895104,0.575384784644301,0.256160706529101,0.236482229888585,0.689491361473237,0,0,0.752969358170419,0.272906150057846,0.898893937780338,0.918251677112708,0.641858054152187,1.27867425159808,0.329851300186716,0.398927315243264,0.426224750532694,0.290209238628584,0,1.24564449799115,0,0.521482918420201,0.217188844705117,1.21079900526674,0.368277635987565,0,0,0.212604299965044,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.6284119788377,0,0,0.361439152384566,1.00267582127178,1.44846518960824,0,0,4.15953195521899,3.54767035940102,3.42555664203192,4.45328856692223,1.09288586487763,0,0,0.348259474598534,0.797747763113191,0,0,0,0.596287222100115,0,0.347140501607594,0.56530794192401,0,0,0.208994966536811,1.55050055501597,0.35576626268671,0,0,0.760272105718513,1.22031028774085,0.367663080345869,0,0.803697554556718,1.57170560838319,0.450445921933289,0,0,0,0,0,0,0.496971951695318,0.506522046658319,1.58891016975863,3.44203944898576,1.06400514659507,3.36406560085384,0,0.74000264525148,2.48968828319813,0.269421344139376,0.490385709340376,0.908144565869588,1.15235184896,0.234321431833797,0.312160076830321,0,0.149448680551801,0,0.485618833104395,0.140450806702248,0.204154171254893,0,0.309977343527296,0,0.494533858557114,0,0,0.673344455816265,0.375355559615893,0.554128230968366,0.438977620880838,0.30648779579902,0,0.113432183160021,0.179389635688862,0.85422955527427,0.423863802319124,0.600182192168805,0.618315175430633,0.772921620136887,0.37223371266318,0.675105328965065,0.194874010322397,0.757301322732344,2.20919756741518,3.39456719319505,0.710019185033229,0.302256294682921,0.169560592310488,3.28543450377605,2.45471508531751,2.86804595389004,2.07355300420312,0.795178609928912,0.813357600086629,2.17688215532278,1.51392510525377,1.09493207722749,0,0,0,0,0,1.0647612003586,0.505754070234305,0.482022059766964,0.772057809126758,0.653638332277218,0.474541238222193,0.808987848960987,1.37355025587742,0.38474715694639,0,0,0,0,0,0,0,0,3.81264159483652,1.88724591328378,1.53650399572076,0,0.904760751704678,1.574003567695,0.325808305310325,1.03993478527958,0,3.36198174427723,1.05667824812239,0.721832238805369,0,0,1.58040879591855,0.858486162094873,0.984868024349589,2.10603838625314,2.0808362720422,1.87467667973554,1.17587489739202,1.13420077793909,0.358234090811393,0.581267877027924,1.15014803749563,2.95597942737566,2.0251139823042,8.9151089682532,10.3766366460212,8.07951573928832,0,0.381988425558278,1.17217447210047,0,0.205654985406647,0,0.857479297891735,0.224262168690721,1.30788020649984,0.36669142910475,0.258543431515556,0,0.845302752556,0.531876233169741,0,0,0,0,0,0,0,0,0.355391948742546,0,1.50719688529793,0.871533458600294,0.299918973546171,2.43247561282381,0.502257091432126,0,0,1.14861935834114,1.42636905040718,0,0.61642896765115,0.358121926479791,0,0,0,0.128343036279748,5.08189248444927,5.20559415430487,2.31986643833309,2.17771144934653,2.55175500661265,3.74503511973591,0,0.414415513436035,1.8403723757871,2.00068208423871,0,0.415941723061614,0,0.315404830067869,0,0.300946099727719,0,1.03473071292505,0,0.368738337083406,1.12948698808508,0,0.686286847621712,0,0.431428401637234,0,0.303127571446259,0,1.5119514666484,0.248107807818777,0.153461973288062,0,0,0.511707249066704,0,1.48418066444991,0.154209693802656,0.710246901252508,1.56041596426237,0,0.697262270759755,1.81289174387433,1.20303882181971,1.19705285616665,0.574072240823034,0.182091168006717,2.09799063935079,0.902399225814824,1.92538342761037,2.35304930753057,2.92278449306521,2.11103257785751,0,0,0,0,0,3.01013864312912,0.254876273045038,1.66215201785745,1.56712328305525,0,0,2.82095137628028,1.64007322849853,2.27764876265012,1.44257416306811,0.183138929636687,0.247528499761764,2.29706215198469,0.650060246036521,0,3.963499449977,0.616194468458578,0.921022048356777,0,1.71872391789238,1.30515024522806,0.255679882248303,4.89676196057055,1.15699440752685,0.768760269460425,1.53135254993501,1.92199783625545,0.464845549297286,0.31481234683064,0,0.308033580176089,0,0,0.18532421910392,0.143124886741991,0.372158369359667,1.89827654831236,0.953150969619124,0,0.42793898803392,1.59101623962968,0,0.899362287916574,1.09814811894422,0.353437207037059,0.202182481573316,0,1.26377536871694,0.48763373908959,0.243713489631284,0,0.272999822815972,1.1312434556297,3.3902434986072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| |||
|short_description=p4@ARHGEF3 | |||
}} |
Latest revision as of 04:02, 19 September 2015
Short description: | p4@ARHGEF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ARHGEF3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000468466_5end |
EntrezGene: | ARHGEF3 |
HGNC: | 683 |
UniProt: | C9J5K8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endodermal cell | 4.03e-09 | 58 |
epithelial cell | 2.57e-07 | 253 |
endo-epithelial cell | 9.23e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
organ system subdivision | 4.13e-11 | 223 |
adult organism | 1.40e-09 | 114 |
embryo | 2.64e-09 | 592 |
developing anatomical structure | 6.54e-08 | 581 |
digestive system | 2.30e-07 | 145 |
digestive tract | 2.30e-07 | 145 |
primitive gut | 2.30e-07 | 145 |
subdivision of digestive tract | 8.21e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.09e-14 | 106 |
cell type cancer | 3.90e-11 | 143 |
adenocarcinoma | 1.96e-07 | 25 |