FFCP PHASE1:Hg19::chr3:56789155..56789207,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:56789155..56789207,-
|short_description=p6@ARHGEF3
|description=CAGE_peak_6_at_ARHGEF3_5end
|association_with_transcript=0bp_to_AK024340_5end
|EntrezGene=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=50650 | |EntrezGene=50650 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=683 | |HGNC=683 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NR81 | |UniProt=Q9NR81 | ||
|association_with_transcript=0bp_to_AK024340_5end | |||
|cluster_id=chr3:56789155..56789207,- | |||
|coexpression_cluster_id=C1886 | |||
|description=CAGE_peak_6_at_ARHGEF3_5end | |||
|id=chr3:56789155..56789207,- | |||
|ontology_enrichment_celltype=CL:0002087!9.87e-43!119;CL:0000738!1.76e-41!140;CL:0000037!4.50e-41!172;CL:0000566!4.50e-41!172;CL:0002031!1.50e-38!124;CL:0002032!5.88e-38!165;CL:0000837!5.88e-38!165;CL:0000988!5.52e-37!182;CL:0002194!9.62e-29!63;CL:0000576!9.62e-29!63;CL:0000040!9.62e-29!63;CL:0000559!9.62e-29!63;CL:0002009!4.95e-28!65;CL:0000557!2.15e-27!71;CL:0000766!7.08e-27!76;CL:0000839!7.87e-27!70;CL:0002057!1.39e-26!42;CL:0000860!2.29e-24!45;CL:0000763!3.30e-24!112;CL:0000049!3.30e-24!112;CL:0000542!2.19e-12!53;CL:0000051!2.19e-12!53;CL:0000838!4.17e-12!52;CL:0000791!2.99e-10!18;CL:0000789!2.99e-10!18;CL:0002420!2.99e-10!18;CL:0002419!2.99e-10!18;CL:0000790!2.99e-10!18;CL:0000236!3.18e-08!14;CL:0002393!3.20e-08!9;CL:0002397!3.20e-08!9;CL:0000625!3.78e-08!11 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.71e-27;33!CL:0002057;4.71e-27;33!CL:0000576;5.33e-27;48!CL:0000473;5.68e-24;39!CL:0000234;5.68e-24;39!CL:0000766;1.16e-17;69!CL:0002087;1.07e-16;104!CL:0000791;7.98e-16;18!CL:0000789;7.98e-16;18!CL:0002419;7.98e-16;18!CL:0000236;1.33e-12;13!CL:0000625;5.42e-12;11!CL:0000738;2.42e-11;136!CL:0000763;3.34e-11;100!CL:0000084;5.16e-10;25!CL:0000542;5.22e-10;53!CL:0000988;6.64e-08;177!CL:0002393;7.62e-08;6!CL:0002397;7.62e-08;6!CL:0002138;2.94e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002087,3.44e-60,115;CL:0000738,3.48e-54,136;CL:0000037,3.66e-52,168;CL:0002031,1.90e-51,120;CL:0000988,6.65e-48,177;CL:0002032,2.77e-47,161;CL:0000837,2.77e-47,161;CL:0002194,5.44e-43,59;CL:0000576,5.44e-43,59;CL:0000040,5.44e-43,59;CL:0000559,5.44e-43,59;CL:0000473,2.96e-42,48;CL:0000234,2.96e-42,48;CL:0002009,5.08e-41,61;CL:0000860,2.65e-40,42;CL:0002057,2.65e-40,42;CL:0000766,1.56e-37,72;CL:0000557,1.76e-37,67;CL:0000839,1.26e-36,66;CL:0000763,6.91e-30,108;CL:0000049,6.91e-30,108;CL:0000838,8.50e-16,52;CL:0000791,1.05e-15,18;CL:0000789,1.05e-15,18;CL:0002420,1.05e-15,18;CL:0002419,1.05e-15,18;CL:0000790,1.05e-15,18;CL:0000542,2.59e-15,53;CL:0000051,2.59e-15,53;CL:0002393,4.07e-12,9;CL:0002397,4.07e-12,9;CL:0000625,5.30e-12,11;CL:0000236,1.65e-11,14;CL:0000134,5.37e-11,354;CL:0002320,2.73e-10,361;CL:0000084,6.17e-10,25;CL:0000827,6.17e-10,25;CL:0000115,5.23e-08,36;CL:0000219,7.01e-08,386;CL:0000034,1.96e-07,441;CL:0005020,3.10e-07,6;CL:0002138,3.10e-07,6;CL:0005022,3.10e-07,6;CL:0000048,3.24e-07,427;CL:0000723,8.77e-07,433 | |||
|ontology_enrichment_development_v019=CL:0002057;6.72e-29;42!CL:0000790;7.98e-16;18!CL:0000051;5.22e-10;53!CL:0000049;8.04e-10;108!CL:0005022;2.94e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.92e-32!112;UBERON:0002390!8.28e-29!102;UBERON:0003061!8.28e-29!102;UBERON:0002371!9.51e-23!80;UBERON:0002405!3.38e-22!115;UBERON:0001474!4.36e-20!86;UBERON:0004765!3.47e-14!101;UBERON:0001434!3.47e-14!101;UBERON:0003081!1.06e-10!216;UBERON:0007023!3.84e-09!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.13e-09;15!UBERON:0000179;5.13e-09;15!UBERON:0000463;5.13e-09;15!UBERON:0002193;6.44e-09;42!UBERON:0002465;7.88e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,8.47e-49,108;UBERON:0002390,9.35e-43,98;UBERON:0003061,9.35e-43,98;UBERON:0002405,3.79e-40,93;UBERON:0002371,9.14e-33,76;UBERON:0001474,4.21e-29,82;UBERON:0004765,5.27e-25,90;UBERON:0001434,7.59e-21,100;UBERON:0003081,1.05e-18,203;UBERON:0002384,3.53e-10,371;UBERON:0000178,5.16e-09,15;UBERON:0000179,5.16e-09,15;UBERON:0000463,5.16e-09,15;UBERON:0002465,8.78e-07,10;UBERON:0002204,9.53e-07,167 | |||
|phase1_expression=0,0,0,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0.328402357799783,0.236132343941038,7.86728553697808,5.37361157336098,6.34746105595912,0,0,0,0,0,12.0376180127287,1.66198622559563,2.60707781711184,2.38711957787437,4.70222495903841,5.50619232232265,7.46969146139141,13.2312397289404,12.4699061417307,16.9808842831471,2.09186133215116,2.05583944010913,1.85823822537062,5.17846306179871,7.94098190240212,10.8781825748749,2.41321976515633,5.80936215225443,1.35426486594342,6.02375486536335,3.82068610080984,4.04502272001152,4.89734227793444,2.88836124368484,5.75403413219137,9.23583640522805,16.1565562673522,21.7374622771674,0.870627715885752,0,0,5.27622197039161,8.86520961314342,11.9453864587814,2.42159801053347,2.20966581592539,2.84816148696796,19.4354863406986,17.4335525971336,16.7726916406701,12.019163532675,10.8127362845885,14.7867539761314,19.3808665744049,21.4830011375017,23.7463399894024,19.3595868907455,21.8455444504853,16.9006758234075,12.8019066769952,22.4221752740167,16.66782075868,16.5261218196216,17.1729675816366,6.26134266020393,5.87237189370939,2.6759125968766,10.5737062863221,12.8916969485753,3.95076127162616,3.34406609193516,1.17903228824749,1.23360899399706,2.84217042164153,6.51844533267181,7.101717086021,9.74133642039557,1.78256731016278,2.06224135232386,1.99380505125259,1.62482318259009,1.28091319725675,0.520237390239513,1.80881695064044,2.48715016007264,3.47763702882063,2.81744470007915,4.54819407752512,3.1360657141493,1.69964014046349,4.98186641682498,1.71813722741315,5.81945291644857,6.37130828648194,3.90650072313851,3.8018081777935,4.66782869141096,6.14335733541208,8.74515085866421,5.91943130110042,4.10563998460523,1.41124720257313,2.13952156626806,1.59306844271079,0,0,0,0,0,0,0,0,0,0,0.175669571386252,1.0478326039817,0,0,0.97364218096405,1.56716763569341,1.72845348674525,1.66943437013739,1.71598473234038,1.48583000531826,0.596287222100115,0,0,0,0,0,0.417989933073621,4.13466814670926,3.20189636418039,3.68192674041137,3.62546385398232,1.52054421143703,2.4406205754817,0.735326160691737,0,5.26868396876071,2.69435247151404,1.12611480483322,0,0.949265659568129,0.549605231791222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.16708818237254,0,0,0,0,0,0.590789906681404,0,0,0.171567810298526,0.548751427043128,0,0,0,0,0,0,0.115930404975077,0,5.63029146268188,2.31492756288305,4.94660795809955,0,0,7.38651018262192,0.936017060556951,2.52672975890838,0,0,0,0.179117045405697,0,0.383382679165211,0,0.264145302039678,0,0.288239906833923,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,6.08118903205952,0.502257091432126,6.32501818449095,0,0,0,0,0,0,0,3.54655368363469,4.52817907204986,2.56686072559497,0.254094624222463,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.78950473144085,5.1771408196468,2.66818894508611,0,0,0,0,0,0,0,0,0,0,0,0,0.164254312027618,0,0,0.241718899183244,0.200506470303285,0.0920809889358963,0,0,0,0,0.385076685522074,0,0,0.211103257785751,1.13733384070897,1.70093705276516,2.15915916102139,1.54227252690289,0,0,0.254876273045038,0,0,0.219259876645935,0,0,0,0,1.854738209659,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0.192190067365106,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0.48763373908959,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0,0,0,0,0,1.7887322147588,0,0,0,0,6.5968189200182,4.58782324285425,5.12682468456746,5.24109906007136,7.81588318863769,7.78167973431261,7.02040868409549,4.75875105776562,0,0,0,0.557409525377156,0,0,0,0.199579371432817,2.2980644415884,0.211673582723883,0,6.73913227472301,0.456469358066384,0,0,0,4.97823032821469,6.86119004449562,17.4596957453034,14.4272244797421,0,1.3420566473545,0.667396566847634,1.36771666781428,0,0,0,0.33307196799782,0,0,2.05111450980652,0,0,0,0,0,0,0,0,0,0,0.422250816255987,0.597743964753209,2.21027132424918,0.503865495708552,0,0.492339221844278,0,0.0898683511473268,0.179021174675609,5.11572370226872,0.690503839458535,0,0,0,0.185536196323703,0,0,0.0874599999961957,0,0,0.254253650292766,0,0,0,0.173624994933292,0,0.241192877250816,0,0.221158519862449,0.886642856860642,0.219385397153973,0,0,0.538651809526579,0.227884111694002,0,0.0897576444097721,0,0,0,1.06606955203727,0,0,0.166211681900156,0,0,0,0,0.158936578980379,0.210998064528027,0,0,0,0,0.707660516026713,1.22206028986725,0,0,0,0.269604531922708,0,0.234264445725339,0.364909578431332,0,0,0.789168805698781,1.20990716048664,0.61214552326098,0.758238955541855,0,0,0,0,0,0,0,0,0,0.0979923974143777,0.0870592065804026,1.57254001417827,0,0,0.0730893170861856,0,0.290967049465258,0,0,0,0,0.189932387867636,0,0,0.213452994739353,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0.410716136675979,2.55493176133945,0,0,0,0,0.717873024576814,0,1.28767814440971,0.223171457441873,0.806201669840715,0,0,0,0.164831716762333,0,0,0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|short_description=p6@ARHGEF3 | |||
}} | }} |
Latest revision as of 03:44, 19 September 2015
Short description: | p6@ARHGEF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_ARHGEF3_5end |
Coexpression cluster: | C1886_CD14CD16_CD14_CD19_Basophils_CD133_renal_blood |
Association with transcript: | 0bp_to_AK024340_5end |
EntrezGene: | ARHGEF3 |
HGNC: | 683 |
UniProt: | Q9NR81 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 8.47e-49 | 108 |
hematopoietic system | 9.35e-43 | 98 |
blood island | 9.35e-43 | 98 |
immune system | 3.79e-40 | 93 |
bone marrow | 9.14e-33 | 76 |
bone element | 4.21e-29 | 82 |
skeletal element | 5.27e-25 | 90 |
skeletal system | 7.59e-21 | 100 |
lateral plate mesoderm | 1.05e-18 | 203 |
connective tissue | 3.53e-10 | 371 |
blood | 5.16e-09 | 15 |
haemolymphatic fluid | 5.16e-09 | 15 |
organism substance | 5.16e-09 | 15 |
lymphoid system | 8.78e-07 | 10 |
musculoskeletal system | 9.53e-07 | 167 |