FFCP PHASE1:Hg19::chr18:2655849..2655941,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23347 | |EntrezGene=23347 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29090 | |HGNC=29090 | ||
|TSSclassifier=strong | |||
|UniProt=A6NHR9 | |UniProt=A6NHR9 | ||
|association_with_transcript=0bp_to_ENST00000261598,ENST00000320876,NM_015295,uc002klm.3_5end | |association_with_transcript=0bp_to_ENST00000261598,ENST00000320876,NM_015295,uc002klm.3_5end | ||
|cluster_id=chr18:2655849..2655941,+ | |||
|coexpression_cluster_id=C3712 | |||
|description=CAGE_peak_2_at_SMCHD1_5end | |description=CAGE_peak_2_at_SMCHD1_5end | ||
|id=chr18:2655849..2655941,+ | |id=chr18:2655849..2655941,+ | ||
|ontology_enrichment_celltype=CL:0000037!5.55e-31!172;CL:0000566!5.55e-31!172;CL:0002032!6.08e-28!165;CL:0000837!6.08e-28!165;CL:0000988!5.08e-27!182;CL:0000738!9.81e-27!140;CL:0002031!2.57e-20!124;CL:0002087!2.59e-20!119;CL:0000542!5.17e-20!53;CL:0000051!5.17e-20!53;CL:0000838!1.51e-19!52;CL:0000763!1.61e-10!112;CL:0000049!1.61e-10!112;CL:0000084!4.69e-10!25;CL:0000827!4.69e-10!25;CL:0000791!5.79e-10!18;CL:0000789!5.79e-10!18;CL:0002420!5.79e-10!18;CL:0002419!5.79e-10!18;CL:0000790!5.79e-10!18;CL:0000945!2.75e-09!24;CL:0000826!2.75e-09!24;CL:0000236!3.40e-08!14;CL:0000625!5.33e-07!11;CL:0000766!6.07e-07!76 | |ontology_enrichment_celltype=CL:0000037!5.55e-31!172;CL:0000566!5.55e-31!172;CL:0002032!6.08e-28!165;CL:0000837!6.08e-28!165;CL:0000988!5.08e-27!182;CL:0000738!9.81e-27!140;CL:0002031!2.57e-20!124;CL:0002087!2.59e-20!119;CL:0000542!5.17e-20!53;CL:0000051!5.17e-20!53;CL:0000838!1.51e-19!52;CL:0000763!1.61e-10!112;CL:0000049!1.61e-10!112;CL:0000084!4.69e-10!25;CL:0000827!4.69e-10!25;CL:0000791!5.79e-10!18;CL:0000789!5.79e-10!18;CL:0002420!5.79e-10!18;CL:0002419!5.79e-10!18;CL:0000790!5.79e-10!18;CL:0000945!2.75e-09!24;CL:0000826!2.75e-09!24;CL:0000236!3.40e-08!14;CL:0000625!5.33e-07!11;CL:0000766!6.07e-07!76 | ||
|ontology_enrichment_celltype_v019=CL:0000542;3.43e-12;53!CL:0000084;4.67e-10;25!CL:0000791;5.53e-10;18!CL:0000789;5.53e-10;18!CL:0002419;5.53e-10;18!CL:0000945;3.14e-09;24!CL:0000236;4.83e-08;13!CL:0002087;4.45e-07;104!CL:0000625;5.17e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.98e-30,168;CL:0002032,2.11e-27,161;CL:0000837,2.11e-27,161;CL:0000988,3.84e-27,177;CL:0000738,3.06e-26,136;CL:0000542,5.17e-20,53;CL:0000051,5.17e-20,53;CL:0002087,7.54e-20,115;CL:0002031,7.62e-20,120;CL:0000838,1.51e-19,52;CL:0000763,4.38e-10,108;CL:0000049,4.38e-10,108;CL:0000084,4.69e-10,25;CL:0000827,4.69e-10,25;CL:0000791,5.79e-10,18;CL:0000789,5.79e-10,18;CL:0002420,5.79e-10,18;CL:0002419,5.79e-10,18;CL:0000790,5.79e-10,18;CL:0000945,2.75e-09,24;CL:0000826,2.75e-09,24;CL:0000236,3.40e-08,14;CL:0000625,5.33e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000051;3.43e-12;53!CL:0000790;5.53e-10;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.65e-12!115;UBERON:0002390!6.78e-09!102;UBERON:0003061!6.78e-09!102;UBERON:0000178!1.17e-07!15;UBERON:0000179!1.17e-07!15;UBERON:0000463!1.17e-07!15;UBERON:0002193!3.74e-07!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.14e-07;15!UBERON:0000179;1.14e-07;15!UBERON:0000463;1.14e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.66e-12,114;UBERON:0002390,1.78e-08,98;UBERON:0003061,1.78e-08,98;UBERON:0000178,1.17e-07,15;UBERON:0000179,1.17e-07,15;UBERON:0000463,1.17e-07,15;UBERON:0002193,9.20e-07,108 | |||
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| ||
|short_description=p2@SMCHD1 | |short_description=p2@SMCHD1 | ||
}} | }} |
Latest revision as of 03:38, 19 September 2015
Short description: | p2@SMCHD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SMCHD1_5end |
Coexpression cluster: | C3712_granulocyte_Neutrophils_embryonic_non_Eosinophils_CD19_rectum |
Association with transcript: | 0bp_to_ENST00000261598, ENST00000320876, NM_015295, uc002klm.3_5end |
EntrezGene: | SMCHD1 |
HGNC: | 29090 |
UniProt: | A6NHR9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.98e-30 | 168 |
hematopoietic oligopotent progenitor cell | 2.11e-27 | 161 |
hematopoietic multipotent progenitor cell | 2.11e-27 | 161 |
hematopoietic cell | 3.84e-27 | 177 |
leukocyte | 3.06e-26 | 136 |
lymphocyte | 5.17e-20 | 53 |
common lymphoid progenitor | 5.17e-20 | 53 |
nongranular leukocyte | 7.54e-20 | 115 |
hematopoietic lineage restricted progenitor cell | 7.62e-20 | 120 |
lymphoid lineage restricted progenitor cell | 1.51e-19 | 52 |
myeloid cell | 4.38e-10 | 108 |
common myeloid progenitor | 4.38e-10 | 108 |
T cell | 4.69e-10 | 25 |
pro-T cell | 4.69e-10 | 25 |
mature alpha-beta T cell | 5.79e-10 | 18 |
alpha-beta T cell | 5.79e-10 | 18 |
immature T cell | 5.79e-10 | 18 |
mature T cell | 5.79e-10 | 18 |
immature alpha-beta T cell | 5.79e-10 | 18 |
lymphocyte of B lineage | 2.75e-09 | 24 |
pro-B cell | 2.75e-09 | 24 |
B cell | 3.40e-08 | 14 |
CD8-positive, alpha-beta T cell | 5.33e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.66e-12 | 114 |
hematopoietic system | 1.78e-08 | 98 |
blood island | 1.78e-08 | 98 |
blood | 1.17e-07 | 15 |
haemolymphatic fluid | 1.17e-07 | 15 |
organism substance | 1.17e-07 | 15 |
hemolymphoid system | 9.20e-07 | 108 |