FFCP PHASE1:Hg19::chr17:2207062..2207116,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:2207062..2207116,-
|short_description=p1@SMG6
|description=CAGE_peak_1_at_SMG6_5end
|association_with_transcript=0bp_to_ENST00000263073,NM_017575,uc002fub...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23293 | |EntrezGene=23293 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17809 | |HGNC=17809 | ||
|TSSclassifier=strong | |||
|UniProt=Q86US8 | |UniProt=Q86US8 | ||
|association_with_transcript=0bp_to_ENST00000263073,NM_017575,uc002fub.1_5end | |||
|cluster_id=chr17:2207062..2207116,- | |||
|description=CAGE_peak_1_at_SMG6_5end | |||
|id=chr17:2207062..2207116,- | |||
|ontology_enrichment_celltype=CL:0000791!1.17e-08!18;CL:0000789!1.17e-08!18;CL:0002420!1.17e-08!18;CL:0002419!1.17e-08!18;CL:0000790!1.17e-08!18;CL:0000838!1.88e-08!52;CL:0000542!4.66e-08!53;CL:0000051!4.66e-08!53;CL:0000084!2.73e-07!25;CL:0000827!2.73e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000791;9.85e-09;18!CL:0000789;9.85e-09;18!CL:0002419;9.85e-09;18!CL:0000084;3.02e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.17e-08,18;CL:0000789,1.17e-08,18;CL:0002420,1.17e-08,18;CL:0002419,1.17e-08,18;CL:0000790,1.17e-08,18;CL:0000838,1.88e-08,52;CL:0000542,4.66e-08,53;CL:0000051,4.66e-08,53;CL:0000084,2.73e-07,25;CL:0000827,2.73e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000790;9.85e-09;18!UBERON:0006601;9.13e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.99e-28!115;UBERON:0001049!9.85e-23!57;UBERON:0005068!9.85e-23!57;UBERON:0006241!9.85e-23!57;UBERON:0007135!9.85e-23!57;UBERON:0000073!1.22e-20!94;UBERON:0001016!1.22e-20!94;UBERON:0002346!6.74e-20!90;UBERON:0005743!6.89e-20!86;UBERON:0003075!7.44e-20!86;UBERON:0007284!7.44e-20!86;UBERON:0001017!1.25e-19!82;UBERON:0002780!3.02e-18!41;UBERON:0001890!3.02e-18!41;UBERON:0006240!3.02e-18!41;UBERON:0002616!4.90e-18!59;UBERON:0000955!1.07e-17!69;UBERON:0006238!1.07e-17!69;UBERON:0003080!4.87e-17!42;UBERON:0001893!8.56e-16!34;UBERON:0002020!9.49e-16!34;UBERON:0003528!9.49e-16!34;UBERON:0003056!1.06e-15!61;UBERON:0002791!2.77e-15!33;UBERON:0001869!6.03e-15!32;UBERON:0002619!4.84e-12!22;UBERON:0000956!1.68e-11!25;UBERON:0000203!1.68e-11!25;UBERON:0001950!3.31e-11!20;UBERON:0000153!1.92e-09!129;UBERON:0007811!1.92e-09!129;UBERON:0000924!7.75e-09!173;UBERON:0006601!7.75e-09!173;UBERON:0004121!1.35e-08!169;UBERON:0000033!8.81e-08!123;UBERON:0003076!6.43e-07!15;UBERON:0003057!6.43e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;6.28e-14;53!UBERON:0002616;6.28e-14;53!UBERON:0001893;7.80e-14;34!UBERON:0003528;1.35e-13;34!UBERON:0002020;1.35e-13;34!UBERON:0001869;2.19e-13;32!UBERON:0002780;2.58e-13;41!UBERON:0001890;2.58e-13;41!UBERON:0002791;2.68e-13;32!UBERON:0002619;3.60e-12;22!UBERON:0000956;1.32e-11;25!UBERON:0000203;1.32e-11;25!UBERON:0001950;2.63e-11;20!UBERON:0000955;1.98e-09;68!UBERON:0001017;5.28e-09;75!UBERON:0007023;6.28e-09;114!UBERON:0001016;9.54e-09;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.96e-28,114;UBERON:0001049,6.11e-24,56;UBERON:0005068,6.11e-24,56;UBERON:0006241,6.11e-24,56;UBERON:0007135,6.11e-24,56;UBERON:0000073,9.24e-23,53;UBERON:0002616,9.24e-23,53;UBERON:0003075,2.11e-21,82;UBERON:0007284,2.11e-21,82;UBERON:0002346,2.17e-21,86;UBERON:0001016,3.46e-21,89;UBERON:0001017,1.70e-20,81;UBERON:0000955,1.36e-18,68;UBERON:0006238,1.36e-18,68;UBERON:0002780,3.02e-18,41;UBERON:0001890,3.02e-18,41;UBERON:0003080,3.02e-18,41;UBERON:0006240,3.02e-18,41;UBERON:0003056,3.35e-17,61;UBERON:0001893,8.56e-16,34;UBERON:0003528,9.49e-16,34;UBERON:0002020,9.49e-16,34;UBERON:0001869,6.03e-15,32;UBERON:0002791,9.96e-15,32;UBERON:0010371,3.72e-12,104;UBERON:0002619,4.84e-12,22;UBERON:0000956,1.68e-11,25;UBERON:0000203,1.68e-11,25;UBERON:0001950,3.31e-11,20;UBERON:0004121,3.19e-09,171;UBERON:0000924,3.19e-09,171;UBERON:0006601,3.19e-09,171;UBERON:0010314,4.55e-09,132;UBERON:0003076,6.43e-07,15;UBERON:0003057,6.43e-07,15 | |||
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| ||
|short_description=p1@SMG6 | |||
}} | }} |
Latest revision as of 02:54, 19 September 2015
Short description: | p1@SMG6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SMG6_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000263073, NM_017575, uc002fub.1_5end |
EntrezGene: | SMG6 |
HGNC: | 17809 |
UniProt: | Q86US8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.17e-08 | 18 |
alpha-beta T cell | 1.17e-08 | 18 |
immature T cell | 1.17e-08 | 18 |
mature T cell | 1.17e-08 | 18 |
immature alpha-beta T cell | 1.17e-08 | 18 |
lymphoid lineage restricted progenitor cell | 1.88e-08 | 52 |
lymphocyte | 4.66e-08 | 53 |
common lymphoid progenitor | 4.66e-08 | 53 |
T cell | 2.73e-07 | 25 |
pro-T cell | 2.73e-07 | 25 |