FFCP PHASE1:Hg19::chr10:72575643..72575753,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8879 | |EntrezGene=8879 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10817 | |HGNC=10817 | ||
|TSSclassifier=strong | |||
|UniProt=O95470 | |UniProt=O95470 | ||
|association_with_transcript=0bp_to_ENST00000373202,ENST00000486993,NM_003901,uc001jrl.2,uc001jrm.2_5end | |association_with_transcript=0bp_to_ENST00000373202,ENST00000486993,NM_003901,uc001jrl.2,uc001jrm.2_5end | ||
|cluster_id=chr10:72575643..72575753,+ | |||
|description=CAGE_peak_1_at_SGPL1_5end | |description=CAGE_peak_1_at_SGPL1_5end | ||
|id=chr10:72575643..72575753,+ | |id=chr10:72575643..72575753,+ | ||
|ontology_enrichment_celltype=CL:0000473;3.55e-11;39!CL:0000234;3.55e-11;39!CL:0000860;2.68e-10;33!CL:0002057;2.68e-10;33!CL:0002076;4.41e-08;42 | |ontology_enrichment_celltype=CL:0002009!1.55e-12!65;CL:0002194!2.34e-12!63;CL:0000576!2.34e-12!63;CL:0000040!2.34e-12!63;CL:0000559!2.34e-12!63;CL:0002057!3.54e-10!42;CL:0000766!1.63e-09!76;CL:0000557!1.87e-09!71;CL:0000860!3.75e-09!45;CL:0000223!4.19e-09!59;CL:0002076!6.89e-09!43;CL:0000839!1.07e-07!70 | ||
| | |ontology_enrichment_celltype_v019=CL:0000473;3.55e-11;39!CL:0000234;3.55e-11;39!CL:0000860;2.68e-10;33!CL:0002057;2.68e-10;33!CL:0002076;4.41e-08;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_celltype_v019_2=CL:0002009,3.74e-13,61;CL:0000473,4.70e-13,48;CL:0000234,4.70e-13,48;CL:0002194,5.47e-13,59;CL:0000576,5.47e-13,59;CL:0000040,5.47e-13,59;CL:0000559,5.47e-13,59;CL:0000860,3.54e-10,42;CL:0002057,3.54e-10,42;CL:0000766,6.93e-10,72;CL:0000557,7.47e-10,67;CL:0000223,8.73e-10,58;CL:0002076,1.06e-09,42;CL:0000839,5.17e-08,66 | ||
|ontology_enrichment_uberon= | |ontology_enrichment_development_v019=CL:0002057;8.25e-08;42 | ||
|ontology_enrichment_disease=DOID:0050687!1.70e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.70e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0000062!5.81e-19!511;UBERON:0000922!3.66e-17!612;UBERON:0002050!2.09e-16!605;UBERON:0005423!2.09e-16!605;UBERON:0000923!4.80e-16!604;UBERON:0005291!4.80e-16!604;UBERON:0006598!4.80e-16!604;UBERON:0002532!4.80e-16!604;UBERON:0000468!2.66e-13!659;UBERON:0000467!4.81e-13!625;UBERON:0000480!7.59e-13!626;UBERON:0004119!1.14e-09!169;UBERON:0000925!1.14e-09!169;UBERON:0006595!1.14e-09!169;UBERON:0005911!4.46e-09!82;UBERON:0004921!3.37e-08!129;UBERON:0004185!3.37e-08!129;UBERON:0001007!1.08e-07!155;UBERON:0001555!1.08e-07!155;UBERON:0007026!1.08e-07!155;UBERON:0000466!1.56e-07!126;UBERON:0002371!5.29e-07!80;UBERON:0001474!7.06e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000922,1.68e-17,592;UBERON:0005423,1.93e-15,581;UBERON:0002050,3.97e-14,564;UBERON:0000923,3.26e-13,560;UBERON:0010316,3.26e-13,560;UBERON:0005291,3.26e-13,560;UBERON:0006598,3.26e-13,560;UBERON:0010317,3.26e-13,560;UBERON:0002532,3.26e-13,560;UBERON:0004119,4.19e-09,160;UBERON:0000925,4.19e-09,160;UBERON:0006595,4.19e-09,160;UBERON:0005911,4.46e-09,82;UBERON:0011216,2.38e-08,223;UBERON:0004921,9.91e-08,118;UBERON:0002371,3.06e-07,76;UBERON:0001007,4.18e-07,145;UBERON:0001555,4.18e-07,145;UBERON:0007026,4.18e-07,145;UBERON:0001474,4.32e-07,82 | |||
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| ||
|short_description=p1@SGPL1 | |short_description=p1@SGPL1 | ||
}} | }} |
Latest revision as of 02:52, 19 September 2015
Short description: | p1@SGPL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SGPL1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000373202, ENST00000486993, NM_003901, uc001jrl.2, uc001jrm.2_5end |
EntrezGene: | SGPL1 |
HGNC: | 10817 |
UniProt: | O95470 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 3.74e-13 | 61 |
defensive cell | 4.70e-13 | 48 |
phagocyte | 4.70e-13 | 48 |
monopoietic cell | 5.47e-13 | 59 |
monocyte | 5.47e-13 | 59 |
monoblast | 5.47e-13 | 59 |
promonocyte | 5.47e-13 | 59 |
classical monocyte | 3.54e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.54e-10 | 42 |
myeloid leukocyte | 6.93e-10 | 72 |
granulocyte monocyte progenitor cell | 7.47e-10 | 67 |
endodermal cell | 8.73e-10 | 58 |
endo-epithelial cell | 1.06e-09 | 42 |
myeloid lineage restricted progenitor cell | 5.17e-08 | 66 |
Ontology term | p-value | n |
---|---|---|
embryo | 1.68e-17 | 592 |
developing anatomical structure | 1.93e-15 | 581 |
embryonic structure | 3.97e-14 | 564 |
germ layer | 3.26e-13 | 560 |
germ layer / neural crest | 3.26e-13 | 560 |
embryonic tissue | 3.26e-13 | 560 |
presumptive structure | 3.26e-13 | 560 |
germ layer / neural crest derived structure | 3.26e-13 | 560 |
epiblast (generic) | 3.26e-13 | 560 |
endoderm-derived structure | 4.19e-09 | 160 |
endoderm | 4.19e-09 | 160 |
presumptive endoderm | 4.19e-09 | 160 |
endo-epithelium | 4.46e-09 | 82 |
organ system subdivision | 2.38e-08 | 223 |
subdivision of digestive tract | 9.91e-08 | 118 |
bone marrow | 3.06e-07 | 76 |
digestive system | 4.18e-07 | 145 |
digestive tract | 4.18e-07 | 145 |
primitive gut | 4.18e-07 | 145 |
bone element | 4.32e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.70e-07 | 143 |