FFCP PHASE1:Hg19::chr1:183212294..183212340,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:183212294..183212340,+ to FFCP PHASE1:Hg19::chr1:183212294..183212340,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3918 | |EntrezGene=3918 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6493 | |HGNC=6493 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-228bp_to_ENST00000476255_5end | |||
|cluster_id=chr1:183212294..183212340,+ | |||
|coexpression_cluster_id=C268 | |||
|description=CAGE_peak_2_at_LAMC2_5end | |||
|id=chr1:183212294..183212340,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.15e-33!254;CL:0002076!1.93e-32!43;CL:0000223!1.20e-22!59;CL:0002368!1.65e-20!13;CL:0002202!4.26e-13!9;CL:0002632!4.26e-13!9;CL:0002251!4.90e-12!21;CL:0002159!6.35e-12!13;CL:0000220!7.11e-12!246;CL:0002321!1.18e-11!248;CL:0000076!2.42e-09!62;CL:0000244!2.45e-09!4;CL:0000731!2.45e-09!4;CL:0000063!2.83e-08!578;CL:0002077!1.35e-07!33;CL:0002621!2.35e-07!3;CL:0002166!3.18e-07!3;CL:0002328!6.11e-07!3;CL:0000068!6.23e-07!3;CL:0000069!6.23e-07!3;CL:0000307!6.23e-07!3;CL:0000377!6.23e-07!3;CL:0000622!9.22e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002368;3.77e-31;13!CL:0002076;1.89e-23;42!CL:0002159;4.41e-23;14!CL:0000244;6.11e-22;4!CL:0000731;6.11e-22;4!CL:0002621;7.04e-17;3!CL:0000307;6.52e-16;3!CL:0000362;1.46e-14;9!CL:0002202;3.80e-14;9!CL:0002632;3.80e-14;9!CL:0000240;4.69e-14;6!CL:0000311;4.69e-14;6!CL:0000079;4.69e-14;6!CL:0000237;4.69e-14;6!CL:0000317;1.06e-11;2!CL:1000448;1.06e-11;2!CL:0002308;1.06e-11;2!CL:0002140;1.06e-11;2!CL:0002077;1.29e-11;34!CL:0002536;7.11e-11;2!CL:0000312;4.59e-10;5!CL:0002166;2.27e-08;3!CL:0002231;4.08e-08;3!CL:0002328;6.43e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,5.90e-31,13;CL:0002076,2.64e-28,42;CL:0002159,4.48e-23,14;CL:0000066,8.12e-23,253;CL:0000244,4.95e-22,4;CL:0000731,4.95e-22,4;CL:0000223,1.62e-19,58;CL:0002621,8.05e-17,3;CL:0000068,1.04e-15,3;CL:0000069,1.04e-15,3;CL:0000307,1.04e-15,3;CL:0000377,1.04e-15,3;CL:0000362,1.26e-14,9;CL:0000240,3.63e-14,6;CL:0000311,3.63e-14,6;CL:0000079,3.63e-14,6;CL:0000237,3.63e-14,6;CL:0000036,3.63e-14,6;CL:0000357,3.63e-14,6;CL:0000114,3.63e-14,6;CL:0002202,5.31e-14,9;CL:0002632,5.31e-14,9;CL:0002077,1.53e-13,34;CL:0000317,9.31e-12,2;CL:1000448,9.31e-12,2;CL:0002308,9.31e-12,2;CL:0002140,9.31e-12,2;CL:0002536,4.05e-11,2;CL:0000312,4.25e-10,5;CL:0002321,2.31e-08,250;CL:0002166,2.32e-08,3;CL:0002231,4.09e-08,3;CL:0002328,7.14e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000377;6.52e-16;3!CL:0000357;4.69e-14;6!CL:0000114;4.69e-14;6!CL:0000223;4.70e-13;58 | |||
|ontology_enrichment_disease=DOID:1749!1.41e-12!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!1.51e-13!14;UBERON:0000158!1.51e-13!14;UBERON:0004119!2.20e-12!169;UBERON:0000925!2.20e-12!169;UBERON:0006595!2.20e-12!169;UBERON:0007196!8.49e-12!14;UBERON:0001558!8.49e-12!14;UBERON:0001004!1.63e-10!72;UBERON:0003729!1.49e-08!5;UBERON:0003124!1.92e-08!7;UBERON:0000365!2.05e-07!5;UBERON:0001949!2.35e-07!3;UBERON:0005178!2.53e-07!34;UBERON:0002224!2.53e-07!34;UBERON:0006554!3.99e-07!44;UBERON:0005181!5.07e-07!35;UBERON:0000161!6.01e-07!35;UBERON:0004815!6.11e-07!3;UBERON:0002031!6.11e-07!3;UBERON:0001008!7.00e-07!45;UBERON:0000478!7.48e-07!24;UBERON:0003343!8.38e-07!4;UBERON:0004785!8.38e-07!4;UBERON:0000305!9.05e-07!7;UBERON:0000166!9.52e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;3.11e-21;12!UBERON:0000365;1.38e-17;5!UBERON:0001949;7.04e-17;3!UBERON:0005910;1.12e-14;6!UBERON:0002419;1.06e-11;2!UBERON:0007771;1.06e-11;2!UBERON:0003297;1.06e-11;2!UBERON:0001821;1.06e-11;2!UBERON:0003487;1.06e-11;2!UBERON:0001820;1.06e-11;2!UBERON:0010371;1.11e-09;31!UBERON:0001003;1.24e-08;15!UBERON:0007376;1.24e-08;15!UBERON:0007196;2.16e-08;15!UBERON:0001558;2.16e-08;15!UBERON:0005911;2.87e-08;36!UBERON:0004815;6.43e-08;3!UBERON:0002031;6.43e-08;3!UBERON:0003929;1.72e-07;7!UBERON:0003126;4.32e-07;7!UBERON:0001005;4.32e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,1.17e-17,5;UBERON:0001949,8.05e-17,3;UBERON:0005910,9.75e-15,6;UBERON:0002419,9.31e-12,2;UBERON:0007771,9.31e-12,2;UBERON:0003297,9.31e-12,2;UBERON:0001821,9.31e-12,2;UBERON:0003487,9.31e-12,2;UBERON:0001820,9.31e-12,2;UBERON:0005089,9.31e-12,2;UBERON:0005088,9.31e-12,2;UBERON:0004119,1.17e-09,160;UBERON:0000925,1.17e-09,160;UBERON:0006595,1.17e-09,160;UBERON:0001003,1.14e-08,15;UBERON:0007376,1.14e-08,15;UBERON:0007383,1.14e-08,15;UBERON:0007196,2.62e-08,15;UBERON:0001558,2.62e-08,15;UBERON:0004815,7.14e-08,3;UBERON:0002031,7.14e-08,3;UBERON:0001004,8.63e-08,74;UBERON:0003102,1.63e-07,99;UBERON:0003126,5.23e-07,7;UBERON:0001005,5.23e-07,7;UBERON:0005911,6.85e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,1.74753097704138,1.84636884759917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,2.409647350226,3.32778609150109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443458794925128,0,0,1.09288586487763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,1.74437620857014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.31021668602176,12.0008293059967,2.58124135850103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.85350742062426,4.49607013030478,3.61904300681871,1.75918045801206,0,0,0,0,0,0.144366447761074,0.462985512576611,0.190254152234598,0,0,0,0,0,0.93733833986777,23.6854800760392,8.22295564005842,1.61205340865127,1.45316969256981,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0.30239029332968,0,0,0,0,0,0,0,0.154209693802656,0,0,0.519254429183621,0,0.120859449591622,12.4314011588037,2.76242966807689,0,0,0,0,0.616122696835318,0,0,1.47772280450026,0,0,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0,0,0,0,0,0,2.87132768998086,9.75090369054782,0,0,0,0,0,0.214840489736547,0,0,0,12.3963686520734,7.30322255987403,2.80747967488085,4.4509423576442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0.876901770507525,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,6.06199310170726,1.34060455107157,1.08890984861323,0,6.45758059006845,6.73885902670502,3.99087138183008,12.8645104115897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0.296964680832639,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0.227586896570999,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179515288819544,0.217294743844016,0.31900115973192,0.0915975934018623,1.5991043280559,0,0,0,0,0,0,0,0,3.16497096792041,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0.284609546029793,0,0,0.587954384486266,0.174118413160805,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0.0801588202515337,0,0,0,0,0,0.288109595976299,0,0.471388069233591,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.941063278792687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0.380805212168795,0,0,0.107410557042488,0,0.398095888698616,0,0,0,0,0,0,0,0.226705925512272,0.231522474323834,0,0.179088841081487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81843360035278,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.235939446695481,0.183428598521679,0.231051332300676,0,0,0,0,0,0,0,0.163771917510097,1.03499260351932,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0.0887023701626388,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0.47775168788705,0,0,0,0,0,0.62164849248911,0.3414369541879,0,0,0,0,0,0.4582137370881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0.0717222053926763,0.332660356546013,0,0,0,0,0,0,0,0,0,0 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|short_description=p2@LAMC2 | |||
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Latest revision as of 02:33, 19 September 2015
Short description: | p2@LAMC2 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LAMC2_5end |
Coexpression cluster: | C268_Mallassezderived_Urothelial_Gingival_Small_Bronchial_Tracheal_Prostate |
Association with transcript: | -228bp_to_ENST00000476255_5end |
EntrezGene: | LAMC2 |
HGNC: | 6493 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
urothelium | 1.17e-17 | 5 |
gingival epithelium | 8.05e-17 | 3 |
transitional epithelium | 9.75e-15 | 6 |
skin gland | 9.31e-12 | 2 |
epidermis gland | 9.31e-12 | 2 |
gland of integumental system | 9.31e-12 | 2 |
sebaceous gland | 9.31e-12 | 2 |
skin sebaceous gland | 9.31e-12 | 2 |
sweat gland | 9.31e-12 | 2 |
sweat gland placode | 9.31e-12 | 2 |
sebaceous gland placode | 9.31e-12 | 2 |
endoderm-derived structure | 1.17e-09 | 160 |
endoderm | 1.17e-09 | 160 |
presumptive endoderm | 1.17e-09 | 160 |
skin epidermis | 1.14e-08 | 15 |
outer epithelium | 1.14e-08 | 15 |
enveloping layer of ectoderm | 1.14e-08 | 15 |
tracheobronchial tree | 2.62e-08 | 15 |
lower respiratory tract | 2.62e-08 | 15 |
lower respiratory tract epithelium | 7.14e-08 | 3 |
epithelium of bronchus | 7.14e-08 | 3 |
respiratory system | 8.63e-08 | 74 |
surface structure | 1.63e-07 | 99 |
trachea | 5.23e-07 | 7 |
respiratory airway | 5.23e-07 | 7 |
endo-epithelium | 6.85e-07 | 82 |