FFCP PHASE1:Hg19::chr1:183208657..183208675,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3918 | |EntrezGene=3918 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6493 | |HGNC=6493 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=21bp_to_ENST00000461729_5end | |association_with_transcript=21bp_to_ENST00000461729_5end | ||
|cluster_id=chr1:183208657..183208675,+ | |||
|coexpression_cluster_id=C268 | |coexpression_cluster_id=C268 | ||
|description=CAGE_peak_3_at_LAMC2_5end | |description=CAGE_peak_3_at_LAMC2_5end | ||
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|ontology_enrichment_celltype=CL:0000066!1.06e-32!254;CL:0002076!5.05e-31!43;CL:0000223!2.02e-21!59;CL:0002368!1.38e-19!13;CL:0000220!6.67e-13!246;CL:0002202!1.12e-12!9;CL:0002632!1.12e-12!9;CL:0002321!1.16e-12!248;CL:0002251!9.01e-12!21;CL:0002159!2.85e-11!13;CL:0000076!7.70e-10!62;CL:0000244!6.40e-09!4;CL:0000731!6.40e-09!4;CL:0002077!7.46e-09!33;CL:0000063!6.15e-08!578;CL:0000548!2.45e-07!679;CL:0000004!2.45e-07!679;CL:0000255!2.45e-07!679;CL:0000012!3.50e-07!682;CL:0002166!6.12e-07!3;CL:0000068!7.26e-07!3;CL:0000069!7.26e-07!3;CL:0000307!7.26e-07!3;CL:0002621!7.26e-07!3;CL:0000377!7.26e-07!3 | |ontology_enrichment_celltype=CL:0000066!1.06e-32!254;CL:0002076!5.05e-31!43;CL:0000223!2.02e-21!59;CL:0002368!1.38e-19!13;CL:0000220!6.67e-13!246;CL:0002202!1.12e-12!9;CL:0002632!1.12e-12!9;CL:0002321!1.16e-12!248;CL:0002251!9.01e-12!21;CL:0002159!2.85e-11!13;CL:0000076!7.70e-10!62;CL:0000244!6.40e-09!4;CL:0000731!6.40e-09!4;CL:0002077!7.46e-09!33;CL:0000063!6.15e-08!578;CL:0000548!2.45e-07!679;CL:0000004!2.45e-07!679;CL:0000255!2.45e-07!679;CL:0000012!3.50e-07!682;CL:0002166!6.12e-07!3;CL:0000068!7.26e-07!3;CL:0000069!7.26e-07!3;CL:0000307!7.26e-07!3;CL:0002621!7.26e-07!3;CL:0000377!7.26e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002368;7.50e-32;13!CL:0002159;1.24e-23;14!CL:0002076;4.68e-23;42!CL:0000244;1.63e-22;4!CL:0000731;1.63e-22;4!CL:0000307;7.61e-17;3!CL:0002621;1.17e-16;3!CL:0000362;7.06e-15;9!CL:0002202;1.12e-14;9!CL:0002632;1.12e-14;9!CL:0000240;2.15e-14;6!CL:0000311;2.15e-14;6!CL:0000079;2.15e-14;6!CL:0000237;2.15e-14;6!CL:0000317;5.36e-12;2!CL:1000448;5.36e-12;2!CL:0002308;5.36e-12;2!CL:0002140;5.36e-12;2!CL:0002536;3.49e-11;2!CL:0000312;3.16e-10;5!CL:0002077;3.65e-10;34!CL:0002166;1.36e-08;3!CL:0002231;2.52e-08;3!CL:0002328;6.15e-08;3!CL:0002252;8.26e-07;1 | |ontology_enrichment_celltype_v019=CL:0002368;7.50e-32;13!CL:0002159;1.24e-23;14!CL:0002076;4.68e-23;42!CL:0000244;1.63e-22;4!CL:0000731;1.63e-22;4!CL:0000307;7.61e-17;3!CL:0002621;1.17e-16;3!CL:0000362;7.06e-15;9!CL:0002202;1.12e-14;9!CL:0002632;1.12e-14;9!CL:0000240;2.15e-14;6!CL:0000311;2.15e-14;6!CL:0000079;2.15e-14;6!CL:0000237;2.15e-14;6!CL:0000317;5.36e-12;2!CL:1000448;5.36e-12;2!CL:0002308;5.36e-12;2!CL:0002140;5.36e-12;2!CL:0002536;3.49e-11;2!CL:0000312;3.16e-10;5!CL:0002077;3.65e-10;34!CL:0002166;1.36e-08;3!CL:0002231;2.52e-08;3!CL:0002328;6.15e-08;3!CL:0002252;8.26e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0002368,6.14e-32,13;CL:0002076,3.80e-29,42;CL:0002159,1.17e-23,14;CL:0000244,1.38e-22,4;CL:0000731,1.38e-22,4;CL:0000066,3.08e-22,253;CL:0000223,3.90e-20,58;CL:0000068,9.96e-17,3;CL:0000069,9.96e-17,3;CL:0000307,9.96e-17,3;CL:0002621,9.96e-17,3;CL:0000377,9.96e-17,3;CL:0000362,6.38e-15,9;CL:0002202,1.11e-14,9;CL:0002632,1.11e-14,9;CL:0000240,1.90e-14,6;CL:0000311,1.90e-14,6;CL:0000079,1.90e-14,6;CL:0000237,1.90e-14,6;CL:0000036,1.90e-14,6;CL:0000357,1.90e-14,6;CL:0000114,1.90e-14,6;CL:0000317,5.82e-12,2;CL:1000448,5.82e-12,2;CL:0002308,5.82e-12,2;CL:0002140,5.82e-12,2;CL:0002077,2.19e-11,34;CL:0002536,3.23e-11,2;CL:0000312,2.70e-10,5;CL:0002166,1.38e-08,3;CL:0002231,2.76e-08,3;CL:0002328,5.07e-08,3;CL:0002321,6.24e-08,250;CL:0002252,8.49e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000377;7.61e-17;3!CL:0000357;2.15e-14;6!CL:0000114;2.15e-14;6!CL:0000223;5.28e-13;58 | |ontology_enrichment_development_v019=CL:0000377;7.61e-17;3!CL:0000357;2.15e-14;6!CL:0000114;2.15e-14;6!CL:0000223;5.28e-13;58 | ||
|ontology_enrichment_disease=DOID:1749!1.39e-12!14 | |ontology_enrichment_disease=DOID:1749!1.39e-12!14 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!6.88e-11!14;UBERON:0000158!6.88e-11!14;UBERON:0000365!2.87e-10!5;UBERON:0004119!3.69e-10!169;UBERON:0000925!3.69e-10!169;UBERON:0006595!3.69e-10!169;UBERON:0007196!3.69e-09!14;UBERON:0001558!3.69e-09!14;UBERON:0003729!5.01e-09!5;UBERON:0001004!8.42e-09!72;UBERON:0005910!1.92e-08!6;UBERON:0000344!4.87e-08!12;UBERON:0005911!1.17e-07!82;UBERON:0003343!2.30e-07!4;UBERON:0004785!2.30e-07!4;UBERON:0005153!5.07e-07!37;UBERON:0004923!7.04e-07!57;UBERON:0001949!7.26e-07!3 | |ontology_enrichment_uberon=UBERON:0005631!6.88e-11!14;UBERON:0000158!6.88e-11!14;UBERON:0000365!2.87e-10!5;UBERON:0004119!3.69e-10!169;UBERON:0000925!3.69e-10!169;UBERON:0006595!3.69e-10!169;UBERON:0007196!3.69e-09!14;UBERON:0001558!3.69e-09!14;UBERON:0003729!5.01e-09!5;UBERON:0001004!8.42e-09!72;UBERON:0005910!1.92e-08!6;UBERON:0000344!4.87e-08!12;UBERON:0005911!1.17e-07!82;UBERON:0003343!2.30e-07!4;UBERON:0004785!2.30e-07!4;UBERON:0005153!5.07e-07!37;UBERON:0004923!7.04e-07!57;UBERON:0001949!7.26e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0000486;1.89e-21;12!UBERON:0000365;4.78e-18;5!UBERON:0001949;1.17e-16;3!UBERON:0005910;4.61e-15;6!UBERON:0002419;5.36e-12;2!UBERON:0007771;5.36e-12;2!UBERON:0003297;5.36e-12;2!UBERON:0001821;5.36e-12;2!UBERON:0003487;5.36e-12;2!UBERON:0001820;5.36e-12;2!UBERON:0010371;8.79e-10;31!UBERON:0001003;7.96e-09;15!UBERON:0007376;7.96e-09;15!UBERON:0007196;1.04e-08;15!UBERON:0001558;1.04e-08;15!UBERON:0005911;1.49e-08;36!UBERON:0004815;6.15e-08;3!UBERON:0002031;6.15e-08;3!UBERON:0003126;1.74e-07;7!UBERON:0001005;1.74e-07;7!UBERON:0003929;2.07e-07;7 | |ontology_enrichment_uberon_v019=UBERON:0000486;1.89e-21;12!UBERON:0000365;4.78e-18;5!UBERON:0001949;1.17e-16;3!UBERON:0005910;4.61e-15;6!UBERON:0002419;5.36e-12;2!UBERON:0007771;5.36e-12;2!UBERON:0003297;5.36e-12;2!UBERON:0001821;5.36e-12;2!UBERON:0003487;5.36e-12;2!UBERON:0001820;5.36e-12;2!UBERON:0010371;8.79e-10;31!UBERON:0001003;7.96e-09;15!UBERON:0007376;7.96e-09;15!UBERON:0007196;1.04e-08;15!UBERON:0001558;1.04e-08;15!UBERON:0005911;1.49e-08;36!UBERON:0004815;6.15e-08;3!UBERON:0002031;6.15e-08;3!UBERON:0003126;1.74e-07;7!UBERON:0001005;1.74e-07;7!UBERON:0003929;2.07e-07;7 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,4.20e-18,5;UBERON:0001949,9.96e-17,3;UBERON:0005910,4.14e-15,6;UBERON:0002419,5.82e-12,2;UBERON:0007771,5.82e-12,2;UBERON:0003297,5.82e-12,2;UBERON:0001821,5.82e-12,2;UBERON:0003487,5.82e-12,2;UBERON:0001820,5.82e-12,2;UBERON:0005089,5.82e-12,2;UBERON:0005088,5.82e-12,2;UBERON:0004119,5.55e-09,160;UBERON:0000925,5.55e-09,160;UBERON:0006595,5.55e-09,160;UBERON:0001003,7.51e-09,15;UBERON:0007376,7.51e-09,15;UBERON:0007383,7.51e-09,15;UBERON:0007196,1.03e-08,15;UBERON:0001558,1.03e-08,15;UBERON:0001004,5.03e-08,74;UBERON:0004815,5.07e-08,3;UBERON:0002031,5.07e-08,3;UBERON:0003102,1.01e-07,99;UBERON:0003126,1.94e-07,7;UBERON:0001005,1.94e-07,7 | |||
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| ||
|short_description=p3@LAMC2 | |short_description=p3@LAMC2 | ||
}} | }} |
Latest revision as of 02:27, 19 September 2015
Short description: | p3@LAMC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LAMC2_5end |
Coexpression cluster: | C268_Mallassezderived_Urothelial_Gingival_Small_Bronchial_Tracheal_Prostate |
Association with transcript: | 21bp_to_ENST00000461729_5end |
EntrezGene: | LAMC2 |
HGNC: | 6493 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
urothelium | 4.20e-18 | 5 |
gingival epithelium | 9.96e-17 | 3 |
transitional epithelium | 4.14e-15 | 6 |
skin gland | 5.82e-12 | 2 |
epidermis gland | 5.82e-12 | 2 |
gland of integumental system | 5.82e-12 | 2 |
sebaceous gland | 5.82e-12 | 2 |
skin sebaceous gland | 5.82e-12 | 2 |
sweat gland | 5.82e-12 | 2 |
sweat gland placode | 5.82e-12 | 2 |
sebaceous gland placode | 5.82e-12 | 2 |
endoderm-derived structure | 5.55e-09 | 160 |
endoderm | 5.55e-09 | 160 |
presumptive endoderm | 5.55e-09 | 160 |
skin epidermis | 7.51e-09 | 15 |
outer epithelium | 7.51e-09 | 15 |
enveloping layer of ectoderm | 7.51e-09 | 15 |
tracheobronchial tree | 1.03e-08 | 15 |
lower respiratory tract | 1.03e-08 | 15 |
respiratory system | 5.03e-08 | 74 |
lower respiratory tract epithelium | 5.07e-08 | 3 |
epithelium of bronchus | 5.07e-08 | 3 |
surface structure | 1.01e-07 | 99 |
trachea | 1.94e-07 | 7 |
respiratory airway | 1.94e-07 | 7 |