FFCP PHASE1:Hg19::chr12:53614155..53614187,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5916 | |EntrezGene=5916 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9866 | |HGNC=9866 | ||
|TSSclassifier=strong | |||
|UniProt=F8VR45 | |UniProt=F8VR45 | ||
|association_with_transcript=0bp_to_ENST00000550265_5end | |association_with_transcript=0bp_to_ENST00000550265_5end | ||
|cluster_id=chr12:53614155..53614187,- | |||
|description=CAGE_peak_3_at_RARG_5end | |description=CAGE_peak_3_at_RARG_5end | ||
|id=chr12:53614155..53614187,- | |id=chr12:53614155..53614187,- | ||
|ontology_enrichment_celltype=CL:0000055!4.32e-14!180;CL:0000057!3.53e-09!75;CL:0000222!3.97e-07!119;CL:0000183!4.65e-07!59 | |ontology_enrichment_celltype=CL:0000055!4.32e-14!180;CL:0000057!3.53e-09!75;CL:0000222!3.97e-07!119;CL:0000183!4.65e-07!59 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.85e-10,76;CL:0000680,3.50e-08,58;CL:0000056,3.50e-08,58;CL:0000355,3.50e-08,58;CL:0000187,8.15e-08,55;CL:0000222,9.13e-07,121 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.38e-10!83;UBERON:0002329!2.38e-10!83;UBERON:0003077!2.38e-10!83;UBERON:0003059!2.38e-10!83;UBERON:0007282!2.38e-10!83;UBERON:0009618!2.38e-10!83;UBERON:0007285!2.38e-10!83;UBERON:0005256!5.99e-10!143;UBERON:0004290!1.77e-08!70;UBERON:0003102!3.81e-08!95;UBERON:0003104!3.85e-08!238;UBERON:0009142!3.85e-08!238;UBERON:0000481!1.41e-07!347;UBERON:0002100!1.94e-07!216;UBERON:0000475!3.27e-07!365 | |ontology_enrichment_uberon=UBERON:0000914!2.38e-10!83;UBERON:0002329!2.38e-10!83;UBERON:0003077!2.38e-10!83;UBERON:0003059!2.38e-10!83;UBERON:0007282!2.38e-10!83;UBERON:0009618!2.38e-10!83;UBERON:0007285!2.38e-10!83;UBERON:0005256!5.99e-10!143;UBERON:0004290!1.77e-08!70;UBERON:0003102!3.81e-08!95;UBERON:0003104!3.85e-08!238;UBERON:0009142!3.85e-08!238;UBERON:0000481!1.41e-07!347;UBERON:0002100!1.94e-07!216;UBERON:0000475!3.27e-07!365 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.41e-11,78;UBERON:0007524,8.17e-11,73;UBERON:0003077,1.59e-10,72;UBERON:0007285,1.59e-10,72;UBERON:0002329,2.15e-10,71;UBERON:0003059,2.15e-10,71;UBERON:0007282,2.15e-10,71;UBERON:0004290,2.15e-10,71;UBERON:0009618,2.15e-10,71;UBERON:0005256,4.11e-10,122;UBERON:0003104,1.05e-09,160;UBERON:0009142,1.05e-09,160;UBERON:0003102,2.88e-09,99;UBERON:0000486,7.17e-09,83;UBERON:0000490,9.85e-09,148;UBERON:0001134,2.91e-08,62;UBERON:0002036,2.91e-08,62;UBERON:0003082,2.91e-08,62;UBERON:0002385,1.50e-07,64;UBERON:0001015,1.50e-07,64;UBERON:0000383,1.50e-07,64;UBERON:0002100,1.71e-07,199 | |||
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| ||
|short_description=p3@RARG | |short_description=p3@RARG | ||
}} | }} |
Latest revision as of 02:13, 19 September 2015
Short description: | p3@RARG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RARG_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000550265_5end |
EntrezGene: | RARG |
HGNC: | 9866 |
UniProt: | F8VR45 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.85e-10 | 76 |
muscle precursor cell | 3.50e-08 | 58 |
myoblast | 3.50e-08 | 58 |
multi-potent skeletal muscle stem cell | 3.50e-08 | 58 |
muscle cell | 8.15e-08 | 55 |
mesodermal cell | 9.13e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.41e-11 | 78 |
dense mesenchyme tissue | 8.17e-11 | 73 |
paraxial mesoderm | 1.59e-10 | 72 |
presumptive paraxial mesoderm | 1.59e-10 | 72 |
somite | 2.15e-10 | 71 |
presomitic mesoderm | 2.15e-10 | 71 |
presumptive segmental plate | 2.15e-10 | 71 |
dermomyotome | 2.15e-10 | 71 |
trunk paraxial mesoderm | 2.15e-10 | 71 |
trunk mesenchyme | 4.11e-10 | 122 |
mesenchyme | 1.05e-09 | 160 |
entire embryonic mesenchyme | 1.05e-09 | 160 |
surface structure | 2.88e-09 | 99 |
multilaminar epithelium | 7.17e-09 | 83 |
unilaminar epithelium | 9.85e-09 | 148 |
skeletal muscle tissue | 2.91e-08 | 62 |
striated muscle tissue | 2.91e-08 | 62 |
myotome | 2.91e-08 | 62 |
muscle tissue | 1.50e-07 | 64 |
musculature | 1.50e-07 | 64 |
musculature of body | 1.50e-07 | 64 |
trunk | 1.71e-07 | 199 |