FFCP PHASE1:Hg19::chr14:21538517..21538539,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr14:21538517..21538539,+
|short_description=p3@ARHGEF40
|description=CAGE_peak_3_at_ARHGEF40_5end
|association_with_transcript=0bp_to_ENST00000298693,ENST0000...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55701 | |EntrezGene=55701 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25516 | |HGNC=25516 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TER5,Q86TR4 | |UniProt=Q8TER5,Q86TR4 | ||
|association_with_transcript=0bp_to_ENST00000298693,ENST00000555232,NM_018071,uc001vzn.1,uc001vzo.1,uc001vzp.2,uc010aij.2,uc010tln.1_5end | |||
|cluster_id=chr14:21538517..21538539,+ | |||
|description=CAGE_peak_3_at_ARHGEF40_5end | |||
|id=chr14:21538517..21538539,+ | |||
|ontology_enrichment_celltype=CL:0000766!8.20e-11!76;CL:0000557!1.11e-10!71;CL:0002009!1.35e-09!65;CL:0002194!2.86e-09!63;CL:0000576!2.86e-09!63;CL:0000040!2.86e-09!63;CL:0000559!2.86e-09!63;CL:0000839!3.57e-09!70;CL:0002057!4.29e-08!42;CL:0000860!3.13e-07!45 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.00e-09;33!CL:0002057;3.00e-09;33!CL:0000473;3.09e-09;39!CL:0000234;3.09e-09;39!CL:0000766;5.37e-07;69!CL:0000576;9.09e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.06e-13,72;CL:0000557,9.02e-13,67;CL:0000839,1.21e-11,66;CL:0002009,3.35e-11,61;CL:0002194,4.35e-11,59;CL:0000576,4.35e-11,59;CL:0000040,4.35e-11,59;CL:0000559,4.35e-11,59;CL:0000473,1.55e-10,48;CL:0000234,1.55e-10,48;CL:0000860,5.92e-09,42;CL:0002057,5.92e-09,42;CL:0000136,3.63e-07,15 | |||
|ontology_enrichment_development_v019=CL:0002057;6.49e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!4.47e-19!659;UBERON:0000467!5.89e-17!625;UBERON:0000480!1.24e-16!626;UBERON:0007023!9.38e-16!115;UBERON:0000479!1.07e-13!787;UBERON:0000062!1.17e-13!511;UBERON:0000922!1.50e-13!612;UBERON:0002050!1.81e-13!605;UBERON:0005423!1.81e-13!605;UBERON:0000923!4.21e-13!604;UBERON:0005291!4.21e-13!604;UBERON:0006598!4.21e-13!604;UBERON:0002532!4.21e-13!604;UBERON:0002204!2.96e-11!167;UBERON:0003081!2.44e-10!216;UBERON:0002390!4.83e-10!102;UBERON:0003061!4.83e-10!102;UBERON:0004765!4.85e-10!101;UBERON:0001434!4.85e-10!101;UBERON:0002371!5.88e-10!80;UBERON:0001474!1.15e-09!86;UBERON:0002193!5.91e-08!112;UBERON:0000475!8.82e-08!365;UBERON:0001049!4.14e-07!57;UBERON:0005068!4.14e-07!57;UBERON:0006241!4.14e-07!57;UBERON:0007135!4.14e-07!57;UBERON:0002405!4.71e-07!115;UBERON:0000926!4.73e-07!448;UBERON:0004120!4.73e-07!448;UBERON:0006603!4.73e-07!448;UBERON:0003075!5.79e-07!86;UBERON:0007284!5.79e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.52e-15,114;UBERON:0000479,2.40e-12,773;UBERON:0002390,9.28e-12,98;UBERON:0003061,9.28e-12,98;UBERON:0002371,1.81e-11,76;UBERON:0001474,3.30e-11,82;UBERON:0003081,8.64e-11,203;UBERON:0004765,1.60e-10,90;UBERON:0001434,2.21e-10,100;UBERON:0003075,9.07e-09,82;UBERON:0007284,9.07e-09,82;UBERON:0002193,1.04e-08,108;UBERON:0002204,1.41e-08,167;UBERON:0000923,5.06e-08,560;UBERON:0010316,5.06e-08,560;UBERON:0005291,5.06e-08,560;UBERON:0006598,5.06e-08,560;UBERON:0010317,5.06e-08,560;UBERON:0002532,5.06e-08,560;UBERON:0002050,6.38e-08,564;UBERON:0005423,1.07e-07,581;UBERON:0002346,1.36e-07,86;UBERON:0001049,1.58e-07,56;UBERON:0005068,1.58e-07,56;UBERON:0006241,1.58e-07,56;UBERON:0007135,1.58e-07,56;UBERON:0000922,2.70e-07,592;UBERON:0000073,4.10e-07,53;UBERON:0002616,4.10e-07,53;UBERON:0002405,8.34e-07,93 | |||
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| ||
|short_description=p3@ARHGEF40 | |||
}} | }} |
Latest revision as of 01:45, 19 September 2015
Short description: | p3@ARHGEF40 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ARHGEF40_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000298693, ENST00000555232, NM_018071, uc001vzn.1, uc001vzo.1, uc001vzp.2, uc010aij.2, uc010tln.1_5end |
EntrezGene: | ARHGEF40 |
HGNC: | 25516 |
UniProt: | Q8TER5Q86TR4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.06e-13 | 72 |
granulocyte monocyte progenitor cell | 9.02e-13 | 67 |
myeloid lineage restricted progenitor cell | 1.21e-11 | 66 |
macrophage dendritic cell progenitor | 3.35e-11 | 61 |
monopoietic cell | 4.35e-11 | 59 |
monocyte | 4.35e-11 | 59 |
monoblast | 4.35e-11 | 59 |
promonocyte | 4.35e-11 | 59 |
defensive cell | 1.55e-10 | 48 |
phagocyte | 1.55e-10 | 48 |
classical monocyte | 5.92e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.92e-09 | 42 |
fat cell | 3.63e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.52e-15 | 114 |
tissue | 2.40e-12 | 773 |
hematopoietic system | 9.28e-12 | 98 |
blood island | 9.28e-12 | 98 |
bone marrow | 1.81e-11 | 76 |
bone element | 3.30e-11 | 82 |
lateral plate mesoderm | 8.64e-11 | 203 |
skeletal element | 1.60e-10 | 90 |
skeletal system | 2.21e-10 | 100 |
neural plate | 9.07e-09 | 82 |
presumptive neural plate | 9.07e-09 | 82 |
hemolymphoid system | 1.04e-08 | 108 |
musculoskeletal system | 1.41e-08 | 167 |
germ layer | 5.06e-08 | 560 |
germ layer / neural crest | 5.06e-08 | 560 |
embryonic tissue | 5.06e-08 | 560 |
presumptive structure | 5.06e-08 | 560 |
germ layer / neural crest derived structure | 5.06e-08 | 560 |
epiblast (generic) | 5.06e-08 | 560 |
embryonic structure | 6.38e-08 | 564 |
developing anatomical structure | 1.07e-07 | 581 |
neurectoderm | 1.36e-07 | 86 |
neural tube | 1.58e-07 | 56 |
neural rod | 1.58e-07 | 56 |
future spinal cord | 1.58e-07 | 56 |
neural keel | 1.58e-07 | 56 |
embryo | 2.70e-07 | 592 |
regional part of nervous system | 4.10e-07 | 53 |
regional part of brain | 4.10e-07 | 53 |
immune system | 8.34e-07 | 93 |