FFCP PHASE1:Hg19::chr1:182992442..182992453,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3915 | |EntrezGene=3915 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6492 | |HGNC=6492 | ||
|TSSclassifier=strong | |||
|UniProt=P11047,Q6NVY8 | |UniProt=P11047,Q6NVY8 | ||
|association_with_transcript=-141bp_to_NM_002293,uc001gpx.2,uc001gpy.3_5end | |association_with_transcript=-141bp_to_NM_002293,uc001gpx.2,uc001gpy.3_5end | ||
|cluster_id=chr1:182992442..182992453,+ | |||
|coexpression_cluster_id=C1253 | |||
|description=CAGE_peak_9_at_LAMC1_5end | |description=CAGE_peak_9_at_LAMC1_5end | ||
|id=chr1:182992442..182992453,+ | |id=chr1:182992442..182992453,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.24e-22!180;CL:0000057!1.23e-18!75;CL:0000680!2.90e-11!57;CL:0000056!2.90e-11!57;CL:0000355!2.90e-11!57;CL:0000222!1.28e-10!119;CL:0000187!2.40e-10!54;CL:0000192!3.79e-09!42;CL:0000514!3.79e-09!42;CL:0000359!4.27e-09!32;CL:0000183!1.13e-08!59;CL:0000393!2.92e-08!60;CL:0000211!2.92e-08!60;CL:0002620!4.24e-08!23;CL:0002334!1.63e-07!12;CL:0000220!1.78e-07!246;CL:0002321!4.12e-07!248 | |ontology_enrichment_celltype=CL:0000055!1.24e-22!180;CL:0000057!1.23e-18!75;CL:0000680!2.90e-11!57;CL:0000056!2.90e-11!57;CL:0000355!2.90e-11!57;CL:0000222!1.28e-10!119;CL:0000187!2.40e-10!54;CL:0000192!3.79e-09!42;CL:0000514!3.79e-09!42;CL:0000359!4.27e-09!32;CL:0000183!1.13e-08!59;CL:0000393!2.92e-08!60;CL:0000211!2.92e-08!60;CL:0002620!4.24e-08!23;CL:0002334!1.63e-07!12;CL:0000220!1.78e-07!246;CL:0002321!4.12e-07!248 | ||
|ontology_enrichment_celltype_v019=CL:0002334;1.99e-11;12!CL:0000136;1.31e-09;13!CL:0002620;4.06e-09;23!CL:0000057;1.51e-08;73!CL:0000359;1.72e-08;32!CL:0000723;6.76e-08;61!CL:0000134;8.23e-08;55!CL:0000048;1.14e-07;58!CL:0000192;1.67e-07;43!CL:0002494;3.90e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.52e-22,76;CL:0000048,5.07e-16,427;CL:0000723,2.99e-15,433;CL:0000034,2.92e-14,441;CL:0002334,2.15e-11,12;CL:0000680,1.18e-10,58;CL:0000056,1.18e-10,58;CL:0000355,1.18e-10,58;CL:0000192,3.56e-10,43;CL:0000514,3.56e-10,43;CL:0000136,1.09e-09,15;CL:0000187,2.23e-09,55;CL:0002620,3.57e-09,23;CL:0000359,4.75e-09,32;CL:0000393,1.24e-07,61;CL:0000211,1.24e-07,61;CL:0002494,3.29e-07,16;CL:0000134,5.11e-07,354 | |||
|ontology_enrichment_development_v019=CL:0000514;1.67e-07;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.05e-12!83;UBERON:0002329!1.05e-12!83;UBERON:0003077!1.05e-12!83;UBERON:0003059!1.05e-12!83;UBERON:0007282!1.05e-12!83;UBERON:0009618!1.05e-12!83;UBERON:0007285!1.05e-12!83;UBERON:0004872!8.88e-12!84;UBERON:0004290!2.39e-11!70;UBERON:0002385!5.48e-11!63;UBERON:0001015!5.48e-11!63;UBERON:0000383!5.48e-11!63;UBERON:0001134!1.39e-10!61;UBERON:0002036!1.39e-10!61;UBERON:0003082!1.39e-10!61;UBERON:0002049!3.86e-10!79;UBERON:0007798!3.86e-10!79;UBERON:0001637!5.23e-10!42;UBERON:0003509!5.23e-10!42;UBERON:0004572!5.23e-10!42;UBERON:0000486!6.09e-10!82;UBERON:0005256!7.90e-10!143;UBERON:0001009!1.54e-09!113;UBERON:0002100!2.09e-09!216;UBERON:0000055!4.12e-09!69;UBERON:0004535!5.13e-09!110;UBERON:0004573!1.26e-08!33;UBERON:0004571!1.26e-08!33;UBERON:0003914!2.06e-08!118;UBERON:0003102!3.09e-08!95;UBERON:0001981!7.32e-08!60;UBERON:0007500!7.32e-08!60;UBERON:0004537!7.32e-08!60;UBERON:0006965!7.32e-08!60;UBERON:0000490!2.43e-07!138;UBERON:0004923!3.07e-07!57;UBERON:0003104!7.01e-07!238;UBERON:0009142!7.01e-07!238 | |ontology_enrichment_uberon=UBERON:0000914!1.05e-12!83;UBERON:0002329!1.05e-12!83;UBERON:0003077!1.05e-12!83;UBERON:0003059!1.05e-12!83;UBERON:0007282!1.05e-12!83;UBERON:0009618!1.05e-12!83;UBERON:0007285!1.05e-12!83;UBERON:0004872!8.88e-12!84;UBERON:0004290!2.39e-11!70;UBERON:0002385!5.48e-11!63;UBERON:0001015!5.48e-11!63;UBERON:0000383!5.48e-11!63;UBERON:0001134!1.39e-10!61;UBERON:0002036!1.39e-10!61;UBERON:0003082!1.39e-10!61;UBERON:0002049!3.86e-10!79;UBERON:0007798!3.86e-10!79;UBERON:0001637!5.23e-10!42;UBERON:0003509!5.23e-10!42;UBERON:0004572!5.23e-10!42;UBERON:0000486!6.09e-10!82;UBERON:0005256!7.90e-10!143;UBERON:0001009!1.54e-09!113;UBERON:0002100!2.09e-09!216;UBERON:0000055!4.12e-09!69;UBERON:0004535!5.13e-09!110;UBERON:0004573!1.26e-08!33;UBERON:0004571!1.26e-08!33;UBERON:0003914!2.06e-08!118;UBERON:0003102!3.09e-08!95;UBERON:0001981!7.32e-08!60;UBERON:0007500!7.32e-08!60;UBERON:0004537!7.32e-08!60;UBERON:0006965!7.32e-08!60;UBERON:0000490!2.43e-07!138;UBERON:0004923!3.07e-07!57;UBERON:0003104!7.01e-07!238;UBERON:0009142!7.01e-07!238 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.48e-08;33!UBERON:0004571;2.48e-08;33!UBERON:0004457;2.63e-08;9!UBERON:0000042;2.63e-08;9!UBERON:0003688;4.23e-08;6!UBERON:0002358;4.23e-08;6!UBERON:0003684;4.23e-08;6!UBERON:0001178;4.23e-08;6!UBERON:0002384;1.76e-07;198!UBERON:0002199;7.49e-07;46!UBERON:0002416;7.49e-07;46 | |||
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| ||
|short_description=p9@LAMC1 | |short_description=p9@LAMC1 | ||
}} | }} |
Latest revision as of 01:45, 19 September 2015
Short description: | p9@LAMC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_LAMC1_5end |
Coexpression cluster: | C1253_Fibroblast_Smooth_Cardiac_Mesenchymal_Adipocyte_mesenchymal_Wilms |
Association with transcript: | -141bp_to_NM_002293, uc001gpx.2, uc001gpy.3_5end |
EntrezGene: | LAMC1 |
HGNC: | 6492 |
UniProt: | P11047Q6NVY8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.52e-22 | 76 |
multi fate stem cell | 5.07e-16 | 427 |
somatic stem cell | 2.99e-15 | 433 |
stem cell | 2.92e-14 | 441 |
preadipocyte | 2.15e-11 | 12 |
muscle precursor cell | 1.18e-10 | 58 |
myoblast | 1.18e-10 | 58 |
multi-potent skeletal muscle stem cell | 1.18e-10 | 58 |
smooth muscle cell | 3.56e-10 | 43 |
smooth muscle myoblast | 3.56e-10 | 43 |
fat cell | 1.09e-09 | 15 |
muscle cell | 2.23e-09 | 55 |
skin fibroblast | 3.57e-09 | 23 |
vascular associated smooth muscle cell | 4.75e-09 | 32 |
electrically responsive cell | 1.24e-07 | 61 |
electrically active cell | 1.24e-07 | 61 |
cardiocyte | 3.29e-07 | 16 |
mesenchymal cell | 5.11e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 9.65e-11 | 73 |
somite | 1.35e-10 | 71 |
presomitic mesoderm | 1.35e-10 | 71 |
presumptive segmental plate | 1.35e-10 | 71 |
dermomyotome | 1.35e-10 | 71 |
trunk paraxial mesoderm | 1.35e-10 | 71 |
paraxial mesoderm | 2.68e-10 | 72 |
presumptive paraxial mesoderm | 2.68e-10 | 72 |
muscle tissue | 3.05e-10 | 64 |
musculature | 3.05e-10 | 64 |
musculature of body | 3.05e-10 | 64 |
skeletal muscle tissue | 4.63e-10 | 62 |
striated muscle tissue | 4.63e-10 | 62 |
myotome | 4.63e-10 | 62 |
epithelial vesicle | 5.32e-10 | 78 |
multilaminar epithelium | 1.59e-09 | 83 |
integument | 1.61e-09 | 46 |
integumental system | 1.61e-09 | 46 |
systemic artery | 2.13e-09 | 33 |
systemic arterial system | 2.13e-09 | 33 |
artery | 2.26e-09 | 42 |
arterial blood vessel | 2.26e-09 | 42 |
arterial system | 2.26e-09 | 42 |
splanchnic layer of lateral plate mesoderm | 4.31e-09 | 83 |
surface structure | 3.31e-08 | 99 |
omentum | 4.41e-08 | 6 |
peritoneum | 4.41e-08 | 6 |
abdominal cavity | 4.41e-08 | 6 |
visceral peritoneum | 4.41e-08 | 6 |
skin of body | 1.28e-07 | 41 |
cardiovascular system | 2.07e-07 | 109 |
circulatory system | 2.22e-07 | 112 |
connective tissue | 2.47e-07 | 371 |