FFCP PHASE1:Hg19::chr19:48759119..48759194,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:48759119..48759194,-
|short_description=p2@CARD8
|description=CAGE_peak_2_at_CARD8_5end
|association_with_transcript=0bp_to_ENST00000517510,ENST0000051933...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=22900 | |EntrezGene=22900 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17057 | |HGNC=17057 | ||
|TSSclassifier=strong | |||
|UniProt=E5RGC9,E5RFV9,E9PEM7,E5RGG3,E5RJG3 | |UniProt=E5RGC9,E5RFV9,E9PEM7,E5RGG3,E5RJG3 | ||
|association_with_transcript=0bp_to_ENST00000517510,ENST00000519332,ENST00000519940,ENST00000520007,ENST00000520753,ENST00000521437,ENST00000522068,ENST00000522889,uc002pii.3,uc002pij.1_5end | |||
|cluster_id=chr19:48759119..48759194,- | |||
|description=CAGE_peak_2_at_CARD8_5end | |||
|id=chr19:48759119..48759194,- | |||
|ontology_enrichment_celltype=CL:0000037!9.04e-17!172;CL:0000566!9.04e-17!172;CL:0002032!2.17e-15!165;CL:0000837!2.17e-15!165;CL:0000542!1.07e-14!53;CL:0000051!1.07e-14!53;CL:0000838!2.38e-14!52;CL:0000988!4.23e-14!182;CL:0000738!2.64e-11!140;CL:0000084!3.21e-10!25;CL:0000827!3.21e-10!25;CL:0000791!5.28e-10!18;CL:0000789!5.28e-10!18;CL:0002420!5.28e-10!18;CL:0002419!5.28e-10!18;CL:0000790!5.28e-10!18;CL:0002031!1.56e-09!124;CL:0002087!2.26e-08!119;CL:0000625!4.09e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.63e-10;25!CL:0000791;4.70e-10;18!CL:0000789;4.70e-10;18!CL:0002419;4.70e-10;18!CL:0000542;6.87e-09;53!CL:0000625;5.66e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,3.68e-17,168;CL:0002032,9.09e-16,161;CL:0000837,9.09e-16,161;CL:0000988,6.26e-15,177;CL:0000542,1.07e-14,53;CL:0000051,1.07e-14,53;CL:0000838,2.38e-14,52;CL:0000738,1.23e-11,136;CL:0000084,3.21e-10,25;CL:0000827,3.21e-10,25;CL:0000791,5.28e-10,18;CL:0000789,5.28e-10,18;CL:0002420,5.28e-10,18;CL:0002419,5.28e-10,18;CL:0000790,5.28e-10,18;CL:0002031,7.67e-10,120;CL:0002087,1.18e-08,115;CL:0000625,4.08e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;4.70e-10;18!CL:0000051;6.87e-09;53 | |||
|ontology_enrichment_disease=DOID:2531!9.62e-08!51;DOID:0060083!9.62e-08!51;DOID:1240!9.78e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2531,9.62e-08,51;DOID:0060083,9.62e-08,51;DOID:1240,9.77e-07,39 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p2@CARD8 | |||
}} | }} |
Latest revision as of 01:44, 19 September 2015
Short description: | p2@CARD8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CARD8_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000517510, ENST00000519332, ENST00000519940, ENST00000520007, ENST00000520753, ENST00000521437, ENST00000522068, ENST00000522889, uc002pii.3, uc002pij.1_5end |
EntrezGene: | CARD8 |
HGNC: | 17057 |
UniProt: | E5RGC9E5RFV9E9PEM7E5RGG3E5RJG3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 3.68e-17 | 168 |
hematopoietic oligopotent progenitor cell | 9.09e-16 | 161 |
hematopoietic multipotent progenitor cell | 9.09e-16 | 161 |
hematopoietic cell | 6.26e-15 | 177 |
lymphocyte | 1.07e-14 | 53 |
common lymphoid progenitor | 1.07e-14 | 53 |
lymphoid lineage restricted progenitor cell | 2.38e-14 | 52 |
leukocyte | 1.23e-11 | 136 |
T cell | 3.21e-10 | 25 |
pro-T cell | 3.21e-10 | 25 |
mature alpha-beta T cell | 5.28e-10 | 18 |
alpha-beta T cell | 5.28e-10 | 18 |
immature T cell | 5.28e-10 | 18 |
mature T cell | 5.28e-10 | 18 |
immature alpha-beta T cell | 5.28e-10 | 18 |
hematopoietic lineage restricted progenitor cell | 7.67e-10 | 120 |
nongranular leukocyte | 1.18e-08 | 115 |
CD8-positive, alpha-beta T cell | 4.08e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 9.62e-08 | 51 |
immune system cancer | 9.62e-08 | 51 |
leukemia | 9.77e-07 | 39 |