FFCP PHASE1:Hg19::chr6:45390442..45390479,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:45390442..45390479,+
|short_description=p8@RUNX2
|description=CAGE_peak_8_at_RUNX2_5end
|association_with_transcript=0bp_to_L40992_5end
|EntrezGene=860
|...") |
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(13 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=860 | |EntrezGene=860 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10472 | |HGNC=10472 | ||
|TSSclassifier=strong | |||
|UniProt=Q13950 | |UniProt=Q13950 | ||
|association_with_transcript=0bp_to_L40992_5end | |||
|cluster_id=chr6:45390442..45390479,+ | |||
|coexpression_cluster_id=C2860 | |||
|description=CAGE_peak_8_at_RUNX2_5end | |||
|id=chr6:45390442..45390479,+ | |||
|ontology_enrichment_celltype=CL:0000766!2.86e-13!76;CL:0000738!8.36e-13!140;CL:0002057!8.30e-12!42;CL:0000134!5.53e-11!358;CL:0002320!1.05e-10!365;CL:0000219!1.89e-10!390;CL:0000557!7.02e-10!71;CL:0000860!7.28e-10!45;CL:0000988!1.08e-09!182;CL:0000037!2.30e-09!172;CL:0000566!2.30e-09!172;CL:0000839!6.59e-09!70;CL:0000763!1.55e-08!112;CL:0000049!1.55e-08!112;CL:0002194!2.69e-08!63;CL:0000576!2.69e-08!63;CL:0000040!2.69e-08!63;CL:0000559!2.69e-08!63;CL:0002009!4.31e-08!65;CL:0002032!4.32e-08!165;CL:0000837!4.32e-08!165;CL:0002031!8.06e-08!124;CL:0002087!1.16e-07!119;CL:0000048!2.52e-07!430;CL:0000723!6.55e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.16e-11;33!CL:0002057;2.16e-11;33!CL:0000576;2.93e-09;48!CL:0000094;3.73e-08;8!CL:0000766;6.13e-08;69!CL:0000473;7.42e-07;39!CL:0000234;7.42e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,7.23e-18,136;CL:0000766,3.04e-16,72;CL:0000988,1.34e-15,177;CL:0000037,8.66e-15,168;CL:0000860,2.25e-13,42;CL:0002057,2.25e-13,42;CL:0000219,5.45e-13,386;CL:0002032,1.22e-12,161;CL:0000837,1.22e-12,161;CL:0000134,1.35e-12,354;CL:0000763,1.06e-11,108;CL:0000049,1.06e-11,108;CL:0002320,1.45e-11,361;CL:0000557,3.61e-11,67;CL:0002087,1.32e-10,115;CL:0000839,1.46e-10,66;CL:0002031,1.82e-10,120;CL:0000473,2.80e-10,48;CL:0000234,2.80e-10,48;CL:0002194,1.90e-09,59;CL:0000576,1.90e-09,59;CL:0000040,1.90e-09,59;CL:0000559,1.90e-09,59;CL:0000048,5.75e-09,427;CL:0000034,6.79e-09,441;CL:0002009,9.14e-09,61;CL:0000723,1.52e-08,433;CL:0000094,3.02e-08,8;CL:0000081,7.78e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;5.52e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.70e-15!102;UBERON:0003061!9.70e-15!102;UBERON:0001474!1.06e-11!86;UBERON:0002193!1.75e-11!112;UBERON:0002371!1.17e-10!80;UBERON:0002384!1.69e-10!375;UBERON:0004765!2.86e-10!101;UBERON:0001434!2.86e-10!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.55e-08;15!UBERON:0000179;2.55e-08;15!UBERON:0000463;2.55e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.07e-16,98;UBERON:0003061,4.07e-16,98;UBERON:0002193,4.09e-14,108;UBERON:0001474,8.91e-13,82;UBERON:0002384,1.51e-11,371;UBERON:0002371,2.93e-11,76;UBERON:0004765,3.29e-10,90;UBERON:0001434,1.44e-09,100;UBERON:0002405,8.64e-09,93;UBERON:0000178,1.37e-08,15;UBERON:0000179,1.37e-08,15;UBERON:0000463,1.37e-08,15 | |||
|phase1_expression=0.726713517082227,1.07050261945492,0.845726424575827,2.00146596706261,0.893922188854576,0,0,0,0.261185628199839,0.245733936501509,0,0.873765488520689,0.263766978228454,0.37129905888014,0,0,0,0,0.487932798790507,4.18611597461079,3.26401105990805,4.70182082217132,0.286235987131057,1.77936752594749,1.00434111675842,0,0,0,1.57345710739562,3.83829398097213,3.09632246632152,0,0.30120591877825,0,0,0,1.76160263600908,4.43196326825502,4.01088894940283,2.82114131930607,0.895661896959697,0,1.28787783817093,3.48955773070955,5.29026321164333,3.63876091781724,1.16214518452842,1.6446715520873,2.47765096716083,0.863077176966451,1.0246428261164,1.6553756092201,1.03423704220986,3.22742341791913,0,3.20011977222428,3.547779950752,1.79778787556068,0.918251677112708,1.28371610830437,0.639337125799041,1.31940520074686,1.79517291859469,2.55734850319616,0.870627715885752,5.10646702222026,3.11411124497787,2.26123798731069,2.08593167368081,1.52032191293582,3.02699751316684,1.84138817993782,3.48108626184973,1.26753171787165,0.425208599930087,1.46761051855863,2.58355851636939,1.65194582125657,2.89306056054744,0,1.19350006319454,0.730656615058536,0,0.546138611262131,0,0.426730222566507,0,0,0,0,0.569212969109448,0.587237189370939,1.14681968437569,5.28685314316103,3.92355994087075,2.10707267820062,2.75393678159366,4.32311839024081,3.08402248499264,0.167186495390678,0.32592226663359,0,0,3.67654507721073,1.47302953737419,1.77227115666897,3.5204502289452,1.5370958367081,2.34106825607781,0.822189523018381,0.552700035571697,0,0.593146252648242,0.267540828089713,0,3.28597093822942,2.68254345521345,1.37450978193052,2.78321661221453,1.91139248594458,2.60433381542567,0.950452044448374,1.35517607169996,1.91979916731628,1.24930726552346,1.4206635122641,0.821127996921047,4.03213486449465,3.20928234940209,2.46201486600758,0,0,0.767175371061182,0,0,0,0.795285947051099,0,2.83604451492204,3.76939975686359,2.63504357079378,0.261958150995425,0,0.370784442784429,0.649094787309367,0.870648686496336,0.531831842075461,22.8950999333128,14.8718676802833,22.6589075811035,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.58902087180316,7.75560528296651,0,0,1.13967460498122,1.98613771219828,1.14734648299525,1.41867352879343,0,0,1.2333377420858,1.24484414159907,0.942974704487816,0.163461903113459,1.96764655938411,0.576175924479999,0.468642863667593,0.624320153660641,0,0.149448680551801,1.996386476944,1.45685649931318,1.40450806702248,0.61246251376468,1.10550885580591,1.54988671763648,1.18800285728205,1.7308685049499,0,2.87447256726495,0.505008341862199,1.50142223846357,0.831192346452549,1.75591048352335,1.22595118319608,1.05166641234618,0.226864366320042,2.51145489964407,2.34913127700424,1.05965950579781,0.900273288253207,1.44273540933814,1.8034837803194,0.744467425326359,1.0126579934476,0.389748020644795,2.52433774244115,1.01254888506529,0.161646056818812,0,0.906768884048762,0.847802961552438,0,0.272746120590835,0.573609190778008,0,0,0,0,0,0,1.56449532329816,0.643240938192885,1.38134921352481,0.464367928031979,0.721879481669586,0.118306800039844,0,0.241011029883482,0,0,0,0,0,0,0,1.40241773803446,0.4115740113314,0,1.26755034821831,0,0,0,0,1.71567810298526,0,1.1240175325762,0.301586917234893,0.370353780634118,0.651616610620649,0,0,1.04337364477569,1.17408694235822,0,0,0,0.790204397959275,0,0.492434012174795,0.702012795417713,0.297262324577456,0,0.671928512795438,0.425325291727159,0.0895585227028483,0.581267877027924,0,2.46331618947972,0.088048434013226,6.01251535068239,9.36779697210249,3.53478813593864,0.380987365753014,1.14596527667483,0,0,0.205654985406647,0,0,1.45770409648969,1.30788020649984,1.0267360014933,0.775630294546667,0,0,1.86156681609409,0,0.771622122786426,0,0.799266537048298,1.14382394926518,0,2.46972101034231,0,1.42156779497018,0,0,1.74306691720059,0.099972991182057,0,0,0,0.479249710983165,0,2.85273810081437,0.289562613335158,0.410952645100767,0.537182889719687,0.784596007954691,2.56139988262505,2.58753089831421,1.92514554419623,0.254094624222463,0,0,0.167516265334349,0,11.9841123831549,11.966458368161,16.1622050240054,0.858840442033979,0.500170521059677,0.813795071099207,1.03985430765404,1.24900292158013,1.26161932027148,1.17141414992713,0.300946099727719,0,1.03473071292505,1.32845119707087,0.921845842708516,0.695068915744663,0.195801157462741,0.343143423810856,2.06768026122887,1.07857100409308,3.62873696531711,0,0,0.30239029332968,0.496215615637554,1.99500565274481,0.561320188866147,0.384417447767103,0.511707249066704,1.12597744800525,0,0.308419387605311,0.532685175939381,0.98552587216571,1.55776328755086,0.697262270759755,0,1.00253235151642,0.552485933615378,2.06666006696292,0.728364672026868,1.18011973463482,1.80479845162965,0.616122696835318,0,0,0.73886140225013,0,0,0.215915916102139,1.54227252690289,1.35473218771926,2.00675909541941,1.01950509218015,0,1.79099803777743,0.219259876645935,0,0.512900250232778,0,0.325378394664303,0.309123034943167,4.39533431128048,5.03307949515587,0.574265537996172,0,0,1.35339005608971,0.1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| ||
|short_description=p8@RUNX2 | |||
}} | }} |
Latest revision as of 01:29, 19 September 2015
Short description: | p8@RUNX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_RUNX2_5end |
Coexpression cluster: | C2860_Dendritic_Mast_granulocyte_Neutrophils_gall_anaplastic_pagetoid |
Association with transcript: | 0bp_to_L40992_5end |
EntrezGene: | RUNX2 |
HGNC: | 10472 |
UniProt: | Q13950 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 7.23e-18 | 136 |
myeloid leukocyte | 3.04e-16 | 72 |
hematopoietic cell | 1.34e-15 | 177 |
hematopoietic stem cell | 8.66e-15 | 168 |
classical monocyte | 2.25e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.25e-13 | 42 |
motile cell | 5.45e-13 | 386 |
hematopoietic oligopotent progenitor cell | 1.22e-12 | 161 |
hematopoietic multipotent progenitor cell | 1.22e-12 | 161 |
mesenchymal cell | 1.35e-12 | 354 |
myeloid cell | 1.06e-11 | 108 |
common myeloid progenitor | 1.06e-11 | 108 |
connective tissue cell | 1.45e-11 | 361 |
granulocyte monocyte progenitor cell | 3.61e-11 | 67 |
nongranular leukocyte | 1.32e-10 | 115 |
myeloid lineage restricted progenitor cell | 1.46e-10 | 66 |
hematopoietic lineage restricted progenitor cell | 1.82e-10 | 120 |
defensive cell | 2.80e-10 | 48 |
phagocyte | 2.80e-10 | 48 |
monopoietic cell | 1.90e-09 | 59 |
monocyte | 1.90e-09 | 59 |
monoblast | 1.90e-09 | 59 |
promonocyte | 1.90e-09 | 59 |
multi fate stem cell | 5.75e-09 | 427 |
stem cell | 6.79e-09 | 441 |
macrophage dendritic cell progenitor | 9.14e-09 | 61 |
somatic stem cell | 1.52e-08 | 433 |
granulocyte | 3.02e-08 | 8 |
blood cell | 7.78e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.07e-16 | 98 |
blood island | 4.07e-16 | 98 |
hemolymphoid system | 4.09e-14 | 108 |
bone element | 8.91e-13 | 82 |
connective tissue | 1.51e-11 | 371 |
bone marrow | 2.93e-11 | 76 |
skeletal element | 3.29e-10 | 90 |
skeletal system | 1.44e-09 | 100 |
immune system | 8.64e-09 | 93 |
blood | 1.37e-08 | 15 |
haemolymphatic fluid | 1.37e-08 | 15 |
organism substance | 1.37e-08 | 15 |