FFCP PHASE1:Hg19::chr10:71562358..71562375,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1305 | |EntrezGene=1305 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2190 | |HGNC=2190 | ||
|TSSclassifier=strong | |||
|UniProt=Q5TAT6 | |UniProt=Q5TAT6 | ||
|association_with_transcript=50bp_to_M59217_5end | |association_with_transcript=50bp_to_M59217_5end | ||
|cluster_id=chr10:71562358..71562375,+ | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_4_at_COL13A1_5end | |description=CAGE_peak_4_at_COL13A1_5end | ||
|id=chr10:71562358..71562375,+ | |id=chr10:71562358..71562375,+ | ||
|ontology_enrichment_celltype=CL:0002274!4.24e-10!5;CL:0000457!4.24e-10!5;CL:0002191!4.24e-10!5;CL:0000097!4.24e-10!5;CL:0000831!4.24e-10!5;CL:0002028!4.24e-10!5;CL:0000057!2.11e-09!75;CL:0000055!1.07e-07!180;CL:0002620!5.77e-07!23 | |ontology_enrichment_celltype=CL:0002274!4.24e-10!5;CL:0000457!4.24e-10!5;CL:0002191!4.24e-10!5;CL:0000097!4.24e-10!5;CL:0000831!4.24e-10!5;CL:0002028!4.24e-10!5;CL:0000057!2.11e-09!75;CL:0000055!1.07e-07!180;CL:0002620!5.77e-07!23 | ||
|ontology_enrichment_celltype_v019=CL:0000097;3.36e-89;5!CL:0000163;9.35e-50;9!CL:0000151;1.31e-11;36!CL:0002545;2.99e-10;2!CL:0002618;2.97e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,2.34e-89,5;CL:0002028,2.34e-89,5;CL:0000163,7.64e-50,9;CL:0000151,1.27e-12,36;CL:0002545,3.58e-10,2;CL:0002618,3.16e-07,3;CL:0000839,8.46e-07,66 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.40e-55;3!UBERON:0007297;2.99e-10;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003076!3.56e-10!15;UBERON:0003057!3.56e-10!15;UBERON:0005743!1.23e-09!86;UBERON:0000475!3.27e-09!365;UBERON:0002680!3.28e-09!9;UBERON:0001895!3.28e-09!9;UBERON:0010092!3.28e-09!9;UBERON:0002616!3.43e-09!59;UBERON:0001017!7.07e-09!82;UBERON:0000073!9.94e-09!94;UBERON:0001016!9.94e-09!94;UBERON:0003075!1.02e-08!86;UBERON:0007284!1.02e-08!86;UBERON:0004733!1.25e-08!12;UBERON:0002028!1.25e-08!12;UBERON:0007277!1.25e-08!12;UBERON:0001049!1.57e-08!57;UBERON:0005068!1.57e-08!57;UBERON:0006241!1.57e-08!57;UBERON:0007135!1.57e-08!57;UBERON:0002037!4.53e-08!6;UBERON:0006215!4.53e-08!6;UBERON:0002346!5.45e-08!90;UBERON:0004732!8.03e-08!13;UBERON:0000955!1.71e-07!69;UBERON:0006238!1.71e-07!69;UBERON:0000033!4.03e-07!123;UBERON:0000477!6.29e-07!286;UBERON:0000467!6.73e-07!625;UBERON:0000480!7.65e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;4.10e-28;6!UBERON:0001301;3.91e-19;1!UBERON:0002680;5.33e-19;9!UBERON:0001895;5.33e-19;9!UBERON:0004733;2.00e-14;12!UBERON:0002028;2.00e-14;12!UBERON:0004732;2.29e-13;13!UBERON:0005800;2.99e-10;2!UBERON:0001515;2.99e-10;2!UBERON:0006947;2.97e-07;3!UBERON:0004054;2.97e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,4.10e-28,6;UBERON:0006215,4.10e-28,6;UBERON:0001301,3.25e-19,1;UBERON:0002680,5.33e-19,9;UBERON:0001895,5.33e-19,9;UBERON:0010092,5.33e-19,9;UBERON:0004733,2.00e-14,12;UBERON:0002028,2.00e-14,12;UBERON:0007277,2.00e-14,12;UBERON:0004732,2.29e-13,13;UBERON:0003076,1.14e-11,15;UBERON:0003057,1.14e-11,15;UBERON:0005800,3.58e-10,2;UBERON:0001515,3.58e-10,2;UBERON:0006947,2.79e-07,3;UBERON:0004054,2.79e-07,3 | |||
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| ||
|short_description=p4@COL13A1 | |short_description=p4@COL13A1 | ||
}} | }} |
Latest revision as of 01:17, 19 September 2015
Short description: | p4@COL13A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_COL13A1_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | 50bp_to_M59217_5end |
EntrezGene: | COL13A1 |
HGNC: | 2190 |
UniProt: | Q5TAT6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 2.34e-89 | 5 |
basophil mast progenitor cell | 2.34e-89 | 5 |
endocrine cell | 7.64e-50 | 9 |
secretory cell | 1.27e-12 | 36 |
thoracic aorta endothelial cell | 3.58e-10 | 2 |
endothelial cell of umbilical vein | 3.16e-07 | 3 |
myeloid lineage restricted progenitor cell | 8.46e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 4.10e-28 | 6 |
rhombic lip | 4.10e-28 | 6 |
epididymis | 3.25e-19 | 1 |
regional part of metencephalon | 5.33e-19 | 9 |
metencephalon | 5.33e-19 | 9 |
future metencephalon | 5.33e-19 | 9 |
segmental subdivision of hindbrain | 2.00e-14 | 12 |
hindbrain | 2.00e-14 | 12 |
presumptive hindbrain | 2.00e-14 | 12 |
segmental subdivision of nervous system | 2.29e-13 | 13 |
posterior neural tube | 1.14e-11 | 15 |
chordal neural plate | 1.14e-11 | 15 |
segment of aorta | 3.58e-10 | 2 |
thoracic aorta | 3.58e-10 | 2 |
male genital duct | 2.79e-07 | 3 |
internal male genitalia | 2.79e-07 | 3 |