FFCP PHASE1:Hg19::chr12:53344588..53344613,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3875 | |EntrezGene=3875 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=6430 | |HGNC=6430 | ||
|TSSclassifier=strong | |||
|UniProt=P05783 | |UniProt=P05783 | ||
|association_with_transcript=-14bp_to_X12876_5end | |association_with_transcript=-14bp_to_X12876_5end | ||
|cluster_id=chr12:53344588..53344613,+ | |||
|coexpression_cluster_id=C819 | |||
|description=CAGE_peak_4_at_KRT18_5end | |description=CAGE_peak_4_at_KRT18_5end | ||
|id=chr12:53344588..53344613,+ | |id=chr12:53344588..53344613,+ | ||
|ontology_enrichment_celltype=CL:0000066!3.28e-41!254;CL:0000077!1.18e-13!19;CL:0000223!2.77e-12!59;CL:0002321!6.26e-09!248;CL:0000220!1.24e-08!246;CL:0002076!1.57e-08!43;CL:0002368!9.62e-07!13 | |ontology_enrichment_celltype=CL:0000066!3.28e-41!254;CL:0000077!1.18e-13!19;CL:0000223!2.77e-12!59;CL:0002321!6.26e-09!248;CL:0000220!1.24e-08!246;CL:0002076!1.57e-08!43;CL:0002368!9.62e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0000077;6.55e-24;19!CL:0000349;6.43e-09;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.51e-28,253;CL:0000077,1.96e-24,19;CL:0000349,5.39e-09,19;CL:0002321,2.95e-07,250;CL:0000076,5.79e-07,63 | |||
|ontology_enrichment_development_v019=UBERON:0008947;7.47e-09;29 | |||
|ontology_enrichment_disease=DOID:305!2.45e-27!106;DOID:0050687!3.22e-25!143;DOID:162!5.54e-17!235;DOID:14566!1.85e-16!239;DOID:299!2.98e-11!25 | |ontology_enrichment_disease=DOID:305!2.45e-27!106;DOID:0050687!3.22e-25!143;DOID:162!5.54e-17!235;DOID:14566!1.85e-16!239;DOID:299!2.98e-11!25 | ||
|ontology_enrichment_disease_v019=DOID:299;2.89e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.72e-18,106;DOID:0050687,2.67e-15,143;DOID:14566,1.07e-12,239;DOID:162,1.20e-12,235;DOID:299,2.59e-08,25 | |||
|ontology_enrichment_uberon=UBERON:0004921!1.63e-15!129;UBERON:0004185!1.63e-15!129;UBERON:0000466!2.62e-15!126;UBERON:0004119!3.28e-15!169;UBERON:0000925!3.28e-15!169;UBERON:0006595!3.28e-15!169;UBERON:0000077!2.85e-14!130;UBERON:0001007!1.41e-13!155;UBERON:0001555!1.41e-13!155;UBERON:0007026!1.41e-13!155;UBERON:0005177!1.01e-12!107;UBERON:0001048!2.93e-12!168;UBERON:0003104!6.07e-12!238;UBERON:0009142!6.07e-12!238;UBERON:0001041!1.57e-11!98;UBERON:0009569!1.96e-11!113;UBERON:0005911!4.51e-11!82;UBERON:0000464!1.44e-10!104;UBERON:0005172!2.45e-10!55;UBERON:0005173!2.45e-10!55;UBERON:0002417!2.64e-10!61;UBERON:0000916!2.64e-10!61;UBERON:0005631!1.29e-09!14;UBERON:0000158!1.29e-09!14;UBERON:0002100!3.41e-09!216;UBERON:0000481!1.71e-08!347;UBERON:0003929!2.17e-08!54;UBERON:0008947!3.34e-08!38;UBERON:0003258!3.34e-08!38;UBERON:0002553!5.00e-08!70;UBERON:0007499!5.33e-08!25;UBERON:0003886!6.82e-08!63;UBERON:0000058!9.88e-08!26;UBERON:0009497!1.70e-07!25;UBERON:0000015!1.70e-07!25;UBERON:0002423!1.70e-07!25;UBERON:0006235!1.70e-07!25;UBERON:0004161!1.70e-07!25;UBERON:0009856!2.09e-07!26;UBERON:0003064!2.30e-07!37;UBERON:0000065!9.08e-07!53;UBERON:0005156!9.08e-07!59;UBERON:0000990!9.08e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.16e-11;9!UBERON:0001557;3.16e-11;9!UBERON:0005631;2.86e-09;10!UBERON:0000158;2.86e-09;10!UBERON:0000072;3.16e-08;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.14e-11,14;UBERON:0000158,3.14e-11,14;UBERON:0001737,6.71e-11,9;UBERON:0008947,4.54e-10,38;UBERON:0003258,4.54e-10,38;UBERON:0005177,3.10e-09,101;UBERON:0000072,4.21e-08,47;UBERON:0001041,7.05e-08,87;UBERON:0004921,1.18e-07,118;UBERON:0009569,1.34e-07,112;UBERON:0003124,3.08e-07,7;UBERON:0005172,6.54e-07,54;UBERON:0005173,6.54e-07,54;UBERON:0001851,7.20e-07,15;UBERON:0004871,7.42e-07,8;UBERON:0001007,8.48e-07,145;UBERON:0001555,8.48e-07,145;UBERON:0007026,8.48e-07,145 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0.872338524100369,0,0,0,4.66894479352867,20.2362338712004,3.9319446983431,4.48403862988371,0,0.331397375727916,2.6893005858071,0,1.46062018077475,0,0,0.408001382488506,0.313454721478088,0,0,0,0,0,0,0,0,0,0.919421224478927,1.50602959389125,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,1.15076305659177,0,0,0,0,0,0.189069634328136,0.886917589850256,1.40535657109002,0.0654895377488563,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0.208994966536811,0.258416759169329,0,0,0.402829317109147,0,0.488124115096339,0,0,0.0892997282840798,0.22452937262617,0.112611480483322,1.53316637465883,0,0.916008719652036,0,0,0,2.98183171017191,0.379891534993739,0,0.573673241497627,1.77334191099179,3.36406560085384,0,1.48000529050296,0,0.538842688278752,0.653847612453835,0.151357427644931,1.15235184896,0,0,0,0,0,0,0.140450806702248,0,0.122834317311768,0,0,0,0.910161361938026,1.43723628363248,0,0,0,0,0,0,0.453728732640084,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0.339121184620975,0,0.272746120590835,0.573609190778008,0.853815942907168,0.132529768321485,0.929551542956147,1.0366105501537,1.00928340350251,0.36497735907583,0,0,0,0,0,2.01121560067735,2.02301628093722,2.16909926895134,2.20587945464788,1.30727666455444,1.18635309555548,1.21348177344148,1.37355025587742,1.92373578473195,0.738155454624648,1.40241773803446,0.8231480226628,1.47008711385542,3.80265104465493,0,0,0,1.72183813960359,0.514703430895577,0.219500570817251,0,0,0.0925884451585296,0,0,1.44331342025273,0,0.469634776943287,0.144366447761074,0,0.190254152234598,16.5942923571448,14.5942647556128,0,0,0,0,0.16798212819886,0.567100388969546,0,0.581267877027924,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0.26593811658487,3.12022310734098,0,0,0,1.28680194292333,0,1.64648067356154,0,0.710783897485092,0,1.50719688529793,2.61460037580088,5.99837947092342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,1.03985430765404,0,0,0.117141414992713,0,0,0,0,0.184369168541703,0,0,0,0,0,0,1.21251028578504,1.66435439510497,2.11673205330776,0.248107807818777,0,0.561320188866147,0.896974044789907,0.511707249066704,0.321707842287215,2.96836132889982,0.154209693802656,0.177561725313127,0.0821271560138091,0,0.116210378459959,1.20859449591622,2.80709058424599,0.276242966807689,0.574072240823034,0.182091168006717,0.131124414959424,1.80479845162965,2.00239876471478,0.784349769176855,1.46139224653261,0.633309773357254,0,0.340187410553031,0,0,0.812839312631559,1.50506932156456,3.56826782263054,5.81753206250107,1.56712328305525,0,0,0.256450125116389,1.64007322849853,0.650756789328606,0.618246069886334,0.0915694648183434,0.165018999841176,0,0,3.21367859688319,0,0.154048617114644,0.307007349452259,0.137836572484531,0,0,0.0852266274161009,0.267096106940212,0.330569830721956,0.384380134730212,0.382838137483752,0.6069466851333,0,0,0,0,0.532306030317022,0,0,0,0.372158369359667,0,3.62197368455267,0,0,0,0,0,1.64722217841633,0.589062011728432,0,0,0,0.48763373908959,0,1.05650146756755,0,0.141405431953713,0,0,0,0,0,0,0.405820753925408,1.239293992399,2.53526042279017,0.286822704408103,0.196498082026242,0,0,0,0,0,0.349934720244983,0.288666338176536,0.670302275535787,2.17781969722645,0.282431402330337,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,2.35012956480441,10.5872784078969,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0.561421621224659,0,0,0,4.83031449570902,3.34242278632766,1.48482340416319,0.921482106297696,0,0,0.111308705022906,0,0,0,0,0.503865495708552,0,0,0,0.988551862620595,2.14825409610731,0,0.0986434056369336,0,1.11136990144637,0,0,0,8.85454387689793,0.262379999988587,0,0.341380344856499,1.5255219017566,3.30942754475111,1.03423011972439,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0.69169171316418,0.807818799687949,3.36806852958225,5.74202087517455,1.4655614944298,7.46248686426089,0,0.156980256395025,0,0,0,0.167821586975843,0,0,3.79796516150449,2.61172493054636,1.13082457147153,0.216388639742091,0.995261931078505,0.0884575645033392,0,0,0,0,0,0,0,0,1.56531695145672,2.18502341580683,0,1.20990716048664,0.30607276163049,0,0,0.103688191397247,0.664653872707185,0.661983911750998,0,0,0.853828638089378,0,13.8847790668105,0.489961987071888,0.34823682632161,0.52418000472609,0.171986032471617,0.677294319023596,0.584714536689484,1.14961639874493,0.0969890164884194,0.441280633457501,0,0.274083849293502,0.19871461170299,0,1.17330829640882,1.28254112402454,1.28071796843612,16.1845783761525,0.864542502924636,0,0.514784993585894,0.14405479798815,0.372757606696298,0.235694034616795,1.22313785466253,1.35983700206033,0,0,0,0,0,4.29765441419957,0,0,0,0,2.79550600698588,0,0,0.0671834724867263,0,1.16495949527454,0.472699093843342,0.247247575143499,0.539228350833479,0.590564889088493,0,0,0.1362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| ||
|short_description=p4@KRT18 | |short_description=p4@KRT18 | ||
}} | }} |
Latest revision as of 01:15, 19 September 2015
Short description: | p4@KRT18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_KRT18_5end |
Coexpression cluster: | C819_Alveolar_MCF7_mesothelioma_endometrioid_signet_Renal_gastric |
Association with transcript: | -14bp_to_X12876_5end |
EntrezGene: | KRT18 |
HGNC: | 6430 |
UniProt: | P05783 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.51e-28 | 253 |
mesothelial cell | 1.96e-24 | 19 |
extraembryonic cell | 5.39e-09 | 19 |
embryonic cell | 2.95e-07 | 250 |
squamous epithelial cell | 5.79e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 3.14e-11 | 14 |
membranous layer | 3.14e-11 | 14 |
larynx | 6.71e-11 | 9 |
respiratory primordium | 4.54e-10 | 38 |
endoderm of foregut | 4.54e-10 | 38 |
trunk region element | 3.10e-09 | 101 |
segment of respiratory tract | 4.21e-08 | 47 |
foregut | 7.05e-08 | 87 |
subdivision of digestive tract | 1.18e-07 | 118 |
subdivision of trunk | 1.34e-07 | 112 |
chorion | 3.08e-07 | 7 |
abdomen element | 6.54e-07 | 54 |
abdominal segment element | 6.54e-07 | 54 |
cortex | 7.20e-07 | 15 |
somatic layer of lateral plate mesoderm | 7.42e-07 | 8 |
digestive system | 8.48e-07 | 145 |
digestive tract | 8.48e-07 | 145 |
primitive gut | 8.48e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.72e-18 | 106 |
cell type cancer | 2.67e-15 | 143 |
disease of cellular proliferation | 1.07e-12 | 239 |
cancer | 1.20e-12 | 235 |
adenocarcinoma | 2.59e-08 | 25 |