FFCP PHASE1:Hg19::chr5:82837130..82837153,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1462 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2464 | |||
|TSSclassifier=strong | |||
|UniProt=P13611 | |||
|association_with_transcript=175bp_to_J02814_5end | |||
|cluster_id=chr5:82837130..82837153,+ | |||
|coexpression_cluster_id=C456 | |||
|description=CAGE_peak_8_at_VCAN_5end | |||
|id=chr5:82837130..82837153,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.63e-23!42;CL:0000860!2.61e-20!45;CL:0000034!1.90e-18!444;CL:0000048!1.95e-18!430;CL:0000723!4.34e-18!436;CL:0000055!1.09e-16!180;CL:0000393!1.71e-12!60;CL:0000211!1.71e-12!60;CL:0000680!2.17e-11!57;CL:0000056!2.17e-11!57;CL:0000355!2.17e-11!57;CL:0002194!5.50e-11!63;CL:0000576!5.50e-11!63;CL:0000040!5.50e-11!63;CL:0000559!5.50e-11!63;CL:0000187!6.05e-11!54;CL:0000057!3.55e-10!75;CL:0002009!4.15e-10!65;CL:0000359!6.66e-10!32;CL:0000183!8.09e-10!59;CL:0000192!3.28e-09!42;CL:0000514!3.28e-09!42;CL:0000839!3.34e-08!70;CL:0000134!4.96e-08!358;CL:0002371!7.15e-08!591;CL:0000557!7.27e-08!71;CL:0002320!9.58e-08!365;CL:0000766!3.11e-07!76;CL:0002334!3.69e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.35e-33;33!CL:0002057;1.35e-33;33!CL:0000473;1.80e-22;39!CL:0000234;1.80e-22;39!CL:0000576;5.80e-20;48!CL:0002334;7.99e-10;12!CL:0000766;1.19e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.77e-37,42;CL:0002057,1.77e-37,42;CL:0000473,6.35e-31,48;CL:0000234,6.35e-31,48;CL:0000048,6.41e-22,427;CL:0002194,7.11e-22,59;CL:0000576,7.11e-22,59;CL:0000040,7.11e-22,59;CL:0000559,7.11e-22,59;CL:0000723,4.78e-21,433;CL:0000034,5.42e-21,441;CL:0002009,1.01e-20,61;CL:0000839,3.63e-18,66;CL:0000557,1.05e-17,67;CL:0000134,2.06e-16,354;CL:0000766,1.35e-15,72;CL:0002320,1.86e-15,361;CL:0000219,2.11e-13,386;CL:0002334,9.49e-10,12;CL:0000057,3.92e-09,76 | |||
|ontology_enrichment_development_v019=CL:0002057;1.76e-27;42 | |||
|ontology_enrichment_disease=DOID:2394!5.66e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.90e-12;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.41e-12,14 | |||
|ontology_enrichment_uberon=UBERON:0002204!9.27e-17!167;UBERON:0003081!1.31e-11!216;UBERON:0001134!1.70e-11!61;UBERON:0002036!1.70e-11!61;UBERON:0003082!1.70e-11!61;UBERON:0002385!5.99e-11!63;UBERON:0001015!5.99e-11!63;UBERON:0000383!5.99e-11!63;UBERON:0000468!9.04e-10!659;UBERON:0004290!1.11e-09!70;UBERON:0000926!3.64e-09!448;UBERON:0004120!3.64e-09!448;UBERON:0006603!3.64e-09!448;UBERON:0000914!3.91e-09!83;UBERON:0002329!3.91e-09!83;UBERON:0003077!3.91e-09!83;UBERON:0003059!3.91e-09!83;UBERON:0007282!3.91e-09!83;UBERON:0009618!3.91e-09!83;UBERON:0007285!3.91e-09!83;UBERON:0002384!2.96e-08!375;UBERON:0004535!3.64e-08!110;UBERON:0001637!5.76e-08!42;UBERON:0003509!5.76e-08!42;UBERON:0004572!5.76e-08!42;UBERON:0000486!9.68e-08!82;UBERON:0004872!9.99e-08!84;UBERON:0001009!1.06e-07!113;UBERON:0000467!2.69e-07!625;UBERON:0000480!3.64e-07!626;UBERON:0004573!4.12e-07!33;UBERON:0004571!4.12e-07!33 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,3.62e-16,315;UBERON:0004120,3.62e-16,315;UBERON:0006603,3.62e-16,315;UBERON:0002384,1.01e-15,371;UBERON:0002204,8.21e-15,167;UBERON:0002371,4.01e-14,76;UBERON:0003081,7.66e-14,203;UBERON:0001474,4.38e-13,82;UBERON:0002390,5.90e-13,98;UBERON:0003061,5.90e-13,98;UBERON:0004765,7.39e-11,90;UBERON:0002193,1.56e-10,108;UBERON:0001434,6.02e-10,100;UBERON:0002405,2.03e-09,93 | |||
|phase1_expression=6.7221000330106,6.42301571672949,3.52386010239928,6.00439790118782,0.893922188854576,4.36169262050184,0,0,1.82829939739887,0.491467873003018,0,0,0,0,0,5.3786011716142,2.41077811209591,0.730310090387373,1.95173119516203,0,0.204000691244253,0,0,0.684372125364421,1.00434111675842,0,0,0,0,0.383829398097213,0.928896739896456,0,0,0,0,0,0,1.66198622559563,4.41197784434312,4.55722828503289,0,0,0,7.99690313287606,2.26725566213286,3.39617685662943,8.83230340241602,3.70051099219643,4.02618282163635,7.76769459269806,3.33008918487831,4.96612682766029,8.61864201841546,5.80936215225443,12.1883837934908,15.6241141820362,4.09359225086769,2.47195832889593,7.95818120164347,3.20929027076094,8.95071976118658,5.60747210317417,4.78712778291916,2.98357325372886,11.3181603065148,3.97169657283798,1.86846674698672,12.5624332628372,8.86520961314342,2.6062661364614,8.47559303686716,3.68277635987565,4.1140110367315,1.05627643155971,1.27562579979026,1.25795187305026,7.30136102452218,7.0583139635508,3.85741408072992,0,0.19891667719909,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0.473554504088034,0,0,0,0,4.87613732627923,1.34140171940727,0.383587685530591,3.61439152384566,0.50133791063589,1.88300474649071,1.5905718941022,2.43317435151318,0.850813354476611,2.88248216701333,2.45937399940753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0.417989933073621,0.516833518338658,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.47274756525787,4.05217637326655,5.29636723252875,16.6365240034312,4.25602058638028,1.12135520028461,1.06748995729705,2.4666754841716,0.933633106199299,0.538842688278752,0.980771418680752,0,0.576175924479999,0,0,0,0.298897361103602,0.117434498643765,0,0.140450806702248,0,0.368502951935304,0.309977343527296,0,1.48360157567134,0,0,0.168336113954066,0.500474079487857,0,0.438977620880838,0.612975591598039,0.901428353439581,0.680593098960126,5.02290979928813,2.13557388818567,1.48352330811693,3.30100205692843,1.03052529238439,3.34932702059318,0.37223371266318,4.21940830603166,1.36411807225678,1.7670364197088,0.644349290496095,0.646584227275248,5.68015348026583,1.30977727695932,0.339121184620975,0,0.272746120590835,0,0.365921118388786,0.265059536642971,1.04574548582567,1.14027160516907,0.504641701751257,0.36497735907583,0,1.92972281457866,0,0.928735856063958,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0.343135620597051,0,0,0.100528972411631,0.185176890317059,0,0,0,0,2.46558257895225,0,0,0,0,0,0,0,0.297262324577456,0,0.503946384596579,0,0.0895585227028483,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0.07333828582095,3.61960804121778,3.57656445851882,1.690605505112,1.86156681609409,0,0,0,0,0,0,0.823240336780769,0,0,0.791951872933429,0.602878754119172,0,0.899756920638513,0,0,0,0,1.14861935834114,0,0.434343920002738,0.205476322550383,1.43248770591916,0,0.394061520403854,0,0.128343036279748,0.76228387266739,0,0.773288812777695,0.502548796003046,0.637938751653163,0,0,0,0.24538298343828,0.500170521059677,0.542530047399471,1.45579603071565,1.24900292158013,0.473107245101804,0.702848489956279,0.601892199455438,4.5481500811197,0,0.664225598535437,0.184369168541703,0.173767228936166,0,0,0.620304078368662,2.15714200818617,1.28073069364133,0,0,0,7.69134204238208,5.98501695823444,13.4716845327875,7.30393150757495,4.09365799253363,14.3159989817811,0,2.46735510084249,4.97172830876756,1.06765302817952,9.34657972530518,0.929683027679674,0.120859449591622,3.80962293576241,0.0920809889358963,0.574072240823034,1.27463817604702,0.262248829918848,0.451199612907412,0.462092022626489,0.784349769176855,0,1.37217117560738,0,0,0,0,0.541892875087706,0.501689773854853,0.509752546090077,0,0.223874754722178,0,0,0,0,0,0.206082023295445,0.0915694648183434,0,0,1.30012049207304,6.42735719376638,0.386682873168488,0.462145851343933,0.767518373630648,0.551346289938122,0.322260734604821,0.725083469571143,0.596586391912706,1.24644849905432,0.495854746082934,0.384380134730212,0.382838137483752,0,1.85938219718914,16.0554296883626,0.6970372701606,0.616067160352178,1.59691809095107,0.869932992075073,1.29726953372744,0.858749320451947,0.372158369359667,1.2655176988749,0.953150969619124,0,0,1.27281299170375,0.78494864019923,1.43897966066652,2.19629623788844,1.06031162111118,0.404364963146632,0,1.68503382495592,0,1.21856744815642,2.11300293513511,0.272999822815972,1.97967604735198,1.13008116620243,1.10273068709225,3.98063385144732,2.63070531152258,0,0.655894752046633,0.608731130888112,1.54911749049875,0.563391205064483,0.860468113224309,0.0982490410131212,0.35667105148125,0,1.26664581178598,4.93942339439853,0,0,0.0962221127255121,0.670302275535787,0,0,0,0,0,0,1.01489521846434,0,1.70894156152249,0,0,1.29694662238543,0.540031437238115,2.37937552888281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0.425846237690326,0,0.307240764308458,0.447352215784832,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0.422008249231538,0.222617410045812,0.988823245360557,0,0.996239941255349,0.276283915531148,0,0,0,4.3545542272653,0,0,0,0.394573622547734,2.3948309234694,0,0.969332746095218,0.371072392647405,0,0,0,0,0,0,0,0,0,1.38899995946634,0,0.120596438625408,0,0,0,0,0,0,0.153900517007594,1.59518878185802,0,0,0,0.31900115973192,0.732780747214898,0,0,0,0,0,0,0,0,0,0.210998064528027,0.979396848954886,0,0,0,0,0,0,0,0,0.134802265961354,0,0.234264445725339,0,0,0,0,0,3.36680037793539,0.821425535170343,0.150323419414493,0.103688191397247,0,0,0,0,0,0,0.347119476670262,0,0,0.34945333648406,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0,0.213452994739353,0,0,0,0,0.432164393964449,0,0,0,0,0,0,0.600420288709789,0,0,3.86788897277961,0.262887354279314,1.39641200636127,0.458320848023367,0.717873024576814,0,0,0.223171457441873,0.134366944973453,1.44119953416961,0,0,0,0,0.0984274815147488,0,0,0.136203406111576,0.482259445395058,1.92555211236127,3.32352270423348,0,0,0,0,0,0,0.105600336519406,0,0,0.714695326373367,0,0,1.62899880526114,0.864221491201268,2.28611152076586,0,0,1.02232813071253,0.113312091520126,0,0,0.129282956361551,0.26446520348538,0,0,0.320362237703084,0.471612915298998,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,1.14681839138014,0.332787154610557,0,0,0,0,0,0,0.468334905806882,0,2.98509605773748,0.934853239388898,1.10961172300523,0.189403005275089,0.50313580350515,0.889811221596536,0.686520205190771,1.36107831386915,6.21748802331122,2.06997209985487,1.75226443880073,0,1.70789252563885,10.3676551960214,4.51930914748591,2.08698024724694,4.95850109690821,2.28483127301277,3.25496586563729,3.63697318405119,2.47044281197723,4.64033759878494,7.16572599657509,3.20022211730523,3.09056134664514,3.03074539889327,0,0,0,0,0,0,0,0,0,0,0,0,0,9.22469466916608,0,0,0.138258436151731,0,0,0,0.327609848846413,0,0,0,0,0,1.13503190713367,0.368211900503681,0,0,0,0,0,0.109209638192014,0,0,0,0,0.954013051960256,0,0,2.82140754952547,0,0,0,0.159633859057151,0.615349092722265,0.504143392443436,0,0.322951291263702,0,0,0,0,0,0,0,0,0.0752103283492573,0.40341013740704,0,0,0.327543835020193,0,0.0675375846183947,0,0,0,5.4697480901822,0,0,0.175871244359621,0,0,0,0,0,0.620916591138472,0,2.57232014156128,0.0679697329768317,0.0657727735628491,0,0.111231401892069,0.078493092850514,0.157115589916002,0,1.82631744101899,2.80705868584208,2.8665101273223,0.0714765441766563,0,0,0.173858272302579,0,0.414432328326074,0,0,0,0,0,0,0,0.31020638566432,2.8666168169323,7.82988022584546,0,1.95068679971631,0.647428837187895,0.205325613712494,2.3196288626764,2.4285549652957,0,0,0,0.11294608203896,0,0,0.0771741581079447,0.437119121007915,0,0,0,0.588925401344836,0,1.6906229103336,2.71883383500507,0.0939839179798536,0.128915775947154,0,0,0,0,0,0.458729283404541,0.716697915757256,0.315543124386369,0,0.872701380680755,0,7.43990036333503,6.47045880083986,2.16313281061895,0.252332849670158,0.437062287854782,1.39368351112581,0.101988829741982,0.26721740526556,0.0918948995348449,0,0.151557396436479,0,0,0.310298987585686,0,0,0,0,1.00918676322552,0.0636471582781649,0.606351566874658,0,0.684466602170562,0,0.286888821570705,0.665320713092027,0,0,0,3.4133576800503,2.34640942403454,0.122241444182866,0,0,0.402547587182052,0 | |||
|short_description=p8@VCAN | |||
}} |
Latest revision as of 01:04, 19 September 2015
Short description: | p8@VCAN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_VCAN_5end |
Coexpression cluster: | C456_Fibroblast_Smooth_CD14_Preadipocyte_Lens_mesenchymal_serous |
Association with transcript: | 175bp_to_J02814_5end |
EntrezGene: | VCAN |
HGNC: | 2464 |
UniProt: | P13611 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.77e-37 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.77e-37 | 42 |
defensive cell | 6.35e-31 | 48 |
phagocyte | 6.35e-31 | 48 |
multi fate stem cell | 6.41e-22 | 427 |
monopoietic cell | 7.11e-22 | 59 |
monocyte | 7.11e-22 | 59 |
monoblast | 7.11e-22 | 59 |
promonocyte | 7.11e-22 | 59 |
somatic stem cell | 4.78e-21 | 433 |
stem cell | 5.42e-21 | 441 |
macrophage dendritic cell progenitor | 1.01e-20 | 61 |
myeloid lineage restricted progenitor cell | 3.63e-18 | 66 |
granulocyte monocyte progenitor cell | 1.05e-17 | 67 |
mesenchymal cell | 2.06e-16 | 354 |
myeloid leukocyte | 1.35e-15 | 72 |
connective tissue cell | 1.86e-15 | 361 |
motile cell | 2.11e-13 | 386 |
preadipocyte | 9.49e-10 | 12 |
fibroblast | 3.92e-09 | 76 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 3.62e-16 | 315 |
mesoderm-derived structure | 3.62e-16 | 315 |
presumptive mesoderm | 3.62e-16 | 315 |
connective tissue | 1.01e-15 | 371 |
musculoskeletal system | 8.21e-15 | 167 |
bone marrow | 4.01e-14 | 76 |
lateral plate mesoderm | 7.66e-14 | 203 |
bone element | 4.38e-13 | 82 |
hematopoietic system | 5.90e-13 | 98 |
blood island | 5.90e-13 | 98 |
skeletal element | 7.39e-11 | 90 |
hemolymphoid system | 1.56e-10 | 108 |
skeletal system | 6.02e-10 | 100 |
immune system | 2.03e-09 | 93 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.41e-12 | 14 |