FFCP PHASE1:Hg19::chr5:82817501..82817514,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:82817501..82817514,+ to FFCP PHASE1:Hg19::chr5:82817501..82817514,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1462 | |EntrezGene=1462 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2464 | |HGNC=2464 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z3R6 | |UniProt=B7Z3R6 | ||
|association_with_transcript=-105bp_to_AK296285_5end | |||
|cluster_id=chr5:82817501..82817514,+ | |||
|coexpression_cluster_id=C456 | |||
|description=CAGE_peak_11_at_VCAN_5end | |||
|id=chr5:82817501..82817514,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.77e-12!180;CL:0002057!2.16e-11!42;CL:0000860!8.66e-10!45;CL:0000034!5.55e-09!444;CL:0000048!8.80e-09!430;CL:0000393!1.64e-08!60;CL:0000211!1.64e-08!60;CL:0000723!3.35e-08!436;CL:0000680!1.41e-07!57;CL:0000056!1.41e-07!57;CL:0000355!1.41e-07!57;CL:0000187!4.93e-07!54;CL:0000057!7.69e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.71e-09;33!CL:0002057;3.71e-09;33!CL:0000576;1.86e-07;48!CL:1000306;2.46e-07;4!CL:0002547;2.46e-07;4!CL:0000473;5.18e-07;39!CL:0000234;5.18e-07;39!CL:0000569;5.98e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.69e-13,42;CL:0002057,5.69e-13,42;CL:0000473,1.48e-10,48;CL:0000234,1.48e-10,48;CL:0000034,3.60e-09,441;CL:0000048,2.05e-08,427;CL:0000723,5.37e-08,433;CL:1000306,1.42e-07,4;CL:0002547,1.42e-07,4;CL:0000569,2.33e-07,4;CL:0000011,2.33e-07,4;CL:0002194,2.90e-07,59;CL:0000576,2.90e-07,59;CL:0000040,2.90e-07,59;CL:0000559,2.90e-07,59;CL:0002009,7.50e-07,61;CL:0000134,8.65e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;1.74e-09;42!CL:0000011;5.98e-07;4 | |||
|ontology_enrichment_disease=DOID:2394!6.84e-10!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;4.26e-14;14!DOID:193;1.32e-07;29!DOID:120;4.08e-07;27 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.45e-14,14;DOID:193,1.23e-07,29;DOID:120,3.55e-07,27 | |||
|ontology_enrichment_uberon=UBERON:0002204!2.56e-10!167;UBERON:0000468!6.52e-09!659;UBERON:0000467!4.81e-07!625;UBERON:0000480!6.27e-07!626;UBERON:0001134!6.96e-07!61;UBERON:0002036!6.96e-07!61;UBERON:0003082!6.96e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0004797;2.46e-07;4!UBERON:0000415;2.46e-07;4!UBERON:0007240;2.46e-07;4!UBERON:0005742;2.46e-07;4!UBERON:0005734;2.46e-07;4!UBERON:0004664;2.46e-07;4!UBERON:0004663;2.46e-07;4!UBERON:0000992;6.65e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004797,6.09e-08,7;UBERON:0000415,1.42e-07,4;UBERON:0007240,1.42e-07,4;UBERON:0005742,1.42e-07,4;UBERON:0005734,1.42e-07,4;UBERON:0004664,1.42e-07,4;UBERON:0004663,1.42e-07,4;UBERON:0000992,4.71e-07,13;UBERON:0002384,7.64e-07,371 | |||
|phase1_expression=0.726713517082227,1.71280419112787,0.140954404095971,2.00146596706261,0.893922188854576,2.61701557230111,0,0,0.261185628199839,0,0,0,0,0,0.331397375727916,4.03395087871065,2.41077811209591,3.65155045193687,0.975865597581014,0,0.204000691244253,0.313454721478088,1.71741592278634,1.09499540058307,0.627713197974014,0,0,0,0,0.383829398097213,0.309632246632152,0,0,0,0,0,0,3.32397245119126,2.20598892217156,2.38711957787437,0,0,0.257575567634187,1.30858414901608,0,0.242584061187816,1.62700325833979,0.411167888021826,1.54853185447552,1.7261543539329,0.512321413058201,0.945928919554341,1.37898272294647,1.29096936716765,1.35426486594342,2.07066573496865,0.818718450173537,2.02251136000576,2.14258724659632,0,1.27867425159808,0,0.398927315243264,0,2.32167390902867,1.70215567407342,0,3.51748131359441,2.60741459210101,0.434377689410233,0.605399502633369,0,0.316462387440884,1.05627643155971,0.850417199860174,1.88692780957538,3.81917345898083,3.00353785683013,1.6072558669708,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,0,0.722878304769133,0,2.89693037921647,0,0,1.22895262313288,3.1042115644759,3.60122621341817,0,0,0,0,0,0,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98183171017191,2.40597972162702,1.98613771219828,10.8997915884549,4.25602058638028,0,0,2.71334303258876,0.311211035399766,0.269421344139376,0.653847612453835,0,0,0,0,0,0,0.117434498643765,0.161872944368132,0,0,0.491337269247072,0.103325781175765,0,0.989067717114227,0,0,0.168336113954066,0.500474079487857,0,0.877955241761676,2.14541457059314,0.600952235626387,0.907457465280168,3.04962380671065,1.49490172172997,0.423863802319124,0.900273288253207,0.412210116953756,1.28820270022815,0.744467425326359,1.0126579934476,0.779496041289589,3.02920529092937,0.0920498986422993,0,3.55009592516614,0.201504196455281,0,0,0,0,1.58565817968474,0.397589304964456,1.97529702878181,1.55491582523056,1.26160425437814,2.18986415445498,0,5.14592750554308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0.0925884451585296,0,0,0,0,2.34817388471643,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1466765716419,1.29271715757778,0,0.845302752556,0.797814349754612,0,0,0,0.266422179016099,0,0,0,0.325736184293735,0,0,0,0,0.399891964728228,0,0,0,0.239624855491583,0,0,0.579125226670317,0.205476322550383,0.537182889719687,0,0,0,0.256686072559497,0,0,0,0.502548796003046,0.637938751653163,0,0,0,0.613457458595699,1.00034104211935,0,1.45579603071565,4.10386674233472,1.41932173530541,0.117141414992713,0,0,1.03473071292505,0.664225598535437,0,0.260650843404249,0,0,1.03384013061444,1.50999940573032,0.320182673410333,0,0,0,0.744323423456331,1.68808170616869,1.40330047216537,1.15325234330131,0,7.72098821489316,0,0.771048469013278,2.30830242907065,0.574890092096664,2.07701771673448,0.348631135379878,0.120859449591622,1.20303882181971,0.0920809889358963,0.574072240823034,0.364182336013434,0.262248829918848,0,1.00119938235739,0,0,0.949964660035881,0,0,0.215915916102139,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0.27470839445503,0.165018999841176,0,0,4.82051789532479,0.290012154876366,0.308097234229289,0.921022048356777,0.689182862422653,2.47066563197029,1.45016693914229,0.852266274161009,0.979352392114111,0.330569830721956,0,0,0,0.929691098594572,8.49993336442728,1.3940745403212,0.924100740528266,0,0,0.37064843820784,0,0.744316738719335,0.632758849437452,0.953150969619124,0,0.42793898803392,0,0,0.539617372749944,2.74537029736055,1.53156123049392,0.202182481573316,0,0.421258456238981,0.48763373908959,2.43713489631284,0,0,0.989838023675989,1.13008116620243,0.551365343546124,0.66343897524122,0,0,0,0.202910376962704,0.30982349809975,0.845086807596724,0.717056761020258,0.0982490410131212,0,0.354761064070598,2.74439925886963,1.97576935775941,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0.994147647766298,0.422008249231538,0.890469640183247,0.824019371133798,0,0.398495976502139,0,0,0,0,1.55519793830904,0.0898683511473268,0,0,0,0,0,0,0.556608588971108,0,0,0,0,0,0,0,0,0,1.90987494426621,0,0.844175070377856,0,0,0.591095237907095,0,0,0,0,0.683652335082007,0,0,0,0,0.549585560411174,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.539209063845416,0.802577647298789,1.40558667435203,0,0,0,0,1.20990716048664,0,0.63186579628488,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0,0,0.90392296312213,0.137041924646751,0,0.0633107959558787,0,0,0,0.19980960958213,0,0,0,0.288109595976299,0.248505071130865,0,0,0,0,0,0.600420288709789,0.273810757783986,0,2.14882720709979,0,1.11712960508902,0.458320848023367,1.43574604915363,0.199679000498991,0,0,0.201550417460179,1.08089965062721,1.16495949527454,0,0.0824158583811665,0,0,0,0,2.17925449778521,1.60753148465019,2.47570985875021,3.738963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| 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| ||
|short_description=p11@VCAN | |||
}} | }} |
Latest revision as of 00:51, 19 September 2015
Short description: | p11@VCAN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_VCAN_5end |
Coexpression cluster: | C456_Fibroblast_Smooth_CD14_Preadipocyte_Lens_mesenchymal_serous |
Association with transcript: | -105bp_to_AK296285_5end |
EntrezGene: | VCAN |
HGNC: | 2464 |
UniProt: | B7Z3R6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.69e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.69e-13 | 42 |
defensive cell | 1.48e-10 | 48 |
phagocyte | 1.48e-10 | 48 |
stem cell | 3.60e-09 | 441 |
multi fate stem cell | 2.05e-08 | 427 |
somatic stem cell | 5.37e-08 | 433 |
fibroblast of tunica adventitia of artery | 1.42e-07 | 4 |
fibroblast of the aortic adventitia | 1.42e-07 | 4 |
cardiac mesenchymal cell | 2.33e-07 | 4 |
migratory trunk neural crest cell | 2.33e-07 | 4 |
monopoietic cell | 2.90e-07 | 59 |
monocyte | 2.90e-07 | 59 |
monoblast | 2.90e-07 | 59 |
promonocyte | 2.90e-07 | 59 |
macrophage dendritic cell progenitor | 7.50e-07 | 61 |
mesenchymal cell | 8.65e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
blood vessel layer | 6.09e-08 | 7 |
artery wall | 1.42e-07 | 4 |
tunica adventitia of artery | 1.42e-07 | 4 |
adventitia | 1.42e-07 | 4 |
tunica adventitia of blood vessel | 1.42e-07 | 4 |
aorta tunica adventitia | 1.42e-07 | 4 |
aorta wall | 1.42e-07 | 4 |
female gonad | 4.71e-07 | 13 |
connective tissue | 7.64e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.45e-14 | 14 |
reproductive organ cancer | 1.23e-07 | 29 |
female reproductive organ cancer | 3.55e-07 | 27 |