FFCP PHASE1:Hg19::chr5:82767555..82767575,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1462 | |EntrezGene=1462 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2464 | |HGNC=2464 | ||
|TSSclassifier=strong | |||
|UniProt=E9PF17 | |UniProt=E9PF17 | ||
|association_with_transcript=-7bp_to_ENST00000512590_5end | |association_with_transcript=-7bp_to_ENST00000512590_5end | ||
|cluster_id=chr5:82767555..82767575,+ | |||
|coexpression_cluster_id=C456 | |||
|description=CAGE_peak_1_at_VCAN_5end | |description=CAGE_peak_1_at_VCAN_5end | ||
|id=chr5:82767555..82767575,+ | |id=chr5:82767555..82767575,+ | ||
|ontology_enrichment_celltype=CL:0002057!6.26e-23!42;CL:0000860!4.77e-19!45;CL:0000055!2.87e-15!180;CL:0000048!4.51e-15!430;CL:0000034!3.04e-14!444;CL:0000723!6.32e-14!436;CL:0000680!2.04e-12!57;CL:0000056!2.04e-12!57;CL:0000355!2.04e-12!57;CL:0000187!2.61e-12!54;CL:0000393!4.13e-12!60;CL:0000211!4.13e-12!60;CL:0000183!2.83e-11!59;CL:0000359!3.66e-10!32;CL:0000192!6.20e-10!42;CL:0000514!6.20e-10!42;CL:0002194!1.21e-09!63;CL:0000576!1.21e-09!63;CL:0000040!1.21e-09!63;CL:0000559!1.21e-09!63;CL:0000057!4.19e-09!75;CL:0002009!9.87e-09!65;CL:0000766!1.19e-07!76;CL:0002334!3.00e-07!12;CL:0002494!5.80e-07!16;CL:0000557!6.71e-07!71;CL:0000839!8.43e-07!70 | |ontology_enrichment_celltype=CL:0002057!6.26e-23!42;CL:0000860!4.77e-19!45;CL:0000055!2.87e-15!180;CL:0000048!4.51e-15!430;CL:0000034!3.04e-14!444;CL:0000723!6.32e-14!436;CL:0000680!2.04e-12!57;CL:0000056!2.04e-12!57;CL:0000355!2.04e-12!57;CL:0000187!2.61e-12!54;CL:0000393!4.13e-12!60;CL:0000211!4.13e-12!60;CL:0000183!2.83e-11!59;CL:0000359!3.66e-10!32;CL:0000192!6.20e-10!42;CL:0000514!6.20e-10!42;CL:0002194!1.21e-09!63;CL:0000576!1.21e-09!63;CL:0000040!1.21e-09!63;CL:0000559!1.21e-09!63;CL:0000057!4.19e-09!75;CL:0002009!9.87e-09!65;CL:0000766!1.19e-07!76;CL:0002334!3.00e-07!12;CL:0002494!5.80e-07!16;CL:0000557!6.71e-07!71;CL:0000839!8.43e-07!70 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.93e-20;33!CL:0002057;3.93e-20;33!CL:0000473;9.76e-13;39!CL:0000234;9.76e-13;39!CL:0000576;1.01e-11;48!CL:0000359;7.86e-10;32!CL:0000192;6.06e-08;43!CL:0002334;2.30e-07;12!CL:0000187;2.85e-07;55!CL:0000393;3.68e-07;61!CL:0000211;3.68e-07;61!CL:0002494;4.50e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.36e-23,42;CL:0002057,2.36e-23,42;CL:0000473,3.96e-18,48;CL:0000234,3.96e-18,48;CL:0000048,3.38e-16,427;CL:0000034,2.38e-15,441;CL:0000723,5.10e-15,433;CL:0000680,9.04e-13,58;CL:0000056,9.04e-13,58;CL:0000355,9.04e-13,58;CL:0000187,1.17e-12,55;CL:0000393,1.85e-12,61;CL:0000211,1.85e-12,61;CL:0002194,6.71e-11,59;CL:0000576,6.71e-11,59;CL:0000040,6.71e-11,59;CL:0000559,6.71e-11,59;CL:0000359,2.47e-10,32;CL:0000192,3.13e-10,43;CL:0000514,3.13e-10,43;CL:0002009,9.62e-10,61;CL:0000057,2.86e-09,76;CL:0000766,1.66e-08,72;CL:0000839,7.33e-08,66;CL:0000557,9.16e-08,67;CL:0002334,2.31e-07,12;CL:0002494,4.52e-07,16;CL:0002320,5.68e-07,361;CL:0000134,9.76e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;3.35e-17;42!CL:0000514;6.06e-08;43!CL:0000355;3.10e-07;58 | |||
|ontology_enrichment_disease=DOID:2394!1.14e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;8.85e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,8.65e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0002204!3.88e-18!167;UBERON:0000468!1.09e-14!659;UBERON:0003081!1.78e-13!216;UBERON:0001134!7.70e-13!61;UBERON:0002036!7.70e-13!61;UBERON:0003082!7.70e-13!61;UBERON:0000467!1.49e-12!625;UBERON:0002385!1.58e-12!63;UBERON:0001015!1.58e-12!63;UBERON:0000383!1.58e-12!63;UBERON:0000480!2.89e-12!626;UBERON:0000914!1.44e-11!83;UBERON:0002329!1.44e-11!83;UBERON:0003077!1.44e-11!83;UBERON:0003059!1.44e-11!83;UBERON:0007282!1.44e-11!83;UBERON:0009618!1.44e-11!83;UBERON:0007285!1.44e-11!83;UBERON:0000479!1.48e-11!787;UBERON:0004290!1.61e-11!70;UBERON:0000922!6.16e-10!612;UBERON:0001009!1.39e-09!113;UBERON:0004535!1.59e-09!110;UBERON:0000926!1.65e-09!448;UBERON:0004120!1.65e-09!448;UBERON:0006603!1.65e-09!448;UBERON:0000948!2.45e-09!24;UBERON:0005498!2.45e-09!24;UBERON:0004140!2.45e-09!24;UBERON:0009881!2.45e-09!24;UBERON:0004141!2.45e-09!24;UBERON:0003084!2.45e-09!24;UBERON:0007005!2.45e-09!24;UBERON:0004139!2.45e-09!24;UBERON:0004291!2.45e-09!24;UBERON:0002050!3.38e-09!605;UBERON:0005423!3.38e-09!605;UBERON:0000923!5.64e-09!604;UBERON:0005291!5.64e-09!604;UBERON:0006598!5.64e-09!604;UBERON:0002532!5.64e-09!604;UBERON:0007100!6.03e-09!27;UBERON:0000486!5.15e-08!82;UBERON:0004872!2.43e-07!84;UBERON:0004573!3.17e-07!33;UBERON:0004571!3.17e-07!33;UBERON:0001637!3.73e-07!42;UBERON:0003509!3.73e-07!42;UBERON:0004572!3.73e-07!42;UBERON:0002390!5.85e-07!102;UBERON:0003061!5.85e-07!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0000948;7.05e-09;22!UBERON:0007100;1.87e-08;25!UBERON:0002385;3.84e-07;31!UBERON:0001015;3.84e-07;31!UBERON:0000383;3.84e-07;31!UBERON:0004573;6.75e-07;33!UBERON:0004571;6.75e-07;33 | |||
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| ||
|short_description=p1@VCAN | |short_description=p1@VCAN | ||
}} | }} |
Latest revision as of 00:41, 19 September 2015
Short description: | p1@VCAN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VCAN_5end |
Coexpression cluster: | C456_Fibroblast_Smooth_CD14_Preadipocyte_Lens_mesenchymal_serous |
Association with transcript: | -7bp_to_ENST00000512590_5end |
EntrezGene: | VCAN |
HGNC: | 2464 |
UniProt: | E9PF17 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.36e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.36e-23 | 42 |
defensive cell | 3.96e-18 | 48 |
phagocyte | 3.96e-18 | 48 |
multi fate stem cell | 3.38e-16 | 427 |
stem cell | 2.38e-15 | 441 |
somatic stem cell | 5.10e-15 | 433 |
muscle precursor cell | 9.04e-13 | 58 |
myoblast | 9.04e-13 | 58 |
multi-potent skeletal muscle stem cell | 9.04e-13 | 58 |
muscle cell | 1.17e-12 | 55 |
electrically responsive cell | 1.85e-12 | 61 |
electrically active cell | 1.85e-12 | 61 |
monopoietic cell | 6.71e-11 | 59 |
monocyte | 6.71e-11 | 59 |
monoblast | 6.71e-11 | 59 |
promonocyte | 6.71e-11 | 59 |
vascular associated smooth muscle cell | 2.47e-10 | 32 |
smooth muscle cell | 3.13e-10 | 43 |
smooth muscle myoblast | 3.13e-10 | 43 |
macrophage dendritic cell progenitor | 9.62e-10 | 61 |
fibroblast | 2.86e-09 | 76 |
myeloid leukocyte | 1.66e-08 | 72 |
myeloid lineage restricted progenitor cell | 7.33e-08 | 66 |
granulocyte monocyte progenitor cell | 9.16e-08 | 67 |
preadipocyte | 2.31e-07 | 12 |
cardiocyte | 4.52e-07 | 16 |
connective tissue cell | 5.68e-07 | 361 |
mesenchymal cell | 9.76e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 8.65e-08 | 14 |