FFCP PHASE1:Hg19::chr5:82767523..82767543,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1462 | |EntrezGene=1462 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2464 | |HGNC=2464 | ||
|TSSclassifier=strong | |||
|UniProt=P13611,Q86W61,Q6MZK8,Q59FG9 | |UniProt=P13611,Q86W61,Q6MZK8,Q59FG9 | ||
|association_with_transcript=30bp_to_ENST00000342785,ENST00000343200,NM_001126336,NM_001164097,NM_001164098,NM_004385,uc003kih.3,uc003kii.3,uc003kij.3,uc003kik.3,uc010jau.2_5end | |association_with_transcript=30bp_to_ENST00000342785,ENST00000343200,NM_001126336,NM_001164097,NM_001164098,NM_004385,uc003kih.3,uc003kii.3,uc003kij.3,uc003kik.3,uc010jau.2_5end | ||
|cluster_id=chr5:82767523..82767543,+ | |||
|coexpression_cluster_id=C4524 | |||
|description=CAGE_peak_4_at_VCAN_5end | |description=CAGE_peak_4_at_VCAN_5end | ||
|id=chr5:82767523..82767543,+ | |id=chr5:82767523..82767543,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.23e-21!180;CL:0002057!2.31e-17!42;CL:0000393!1.31e-14!60;CL:0000211!1.31e-14!60;CL:0000860!2.50e-14!45;CL:0000680!7.82e-14!57;CL:0000056!7.82e-14!57;CL:0000355!7.82e-14!57;CL:0000187!7.95e-14!54;CL:0000183!1.20e-12!59;CL:0000057!7.38e-12!75;CL:0000048!9.89e-12!430;CL:0000034!2.20e-11!444;CL:0000723!7.03e-11!436;CL:0000192!2.76e-10!42;CL:0000514!2.76e-10!42;CL:0000359!1.10e-09!32;CL:0002334!2.06e-07!12 | |ontology_enrichment_celltype=CL:0000055!1.23e-21!180;CL:0002057!2.31e-17!42;CL:0000393!1.31e-14!60;CL:0000211!1.31e-14!60;CL:0000860!2.50e-14!45;CL:0000680!7.82e-14!57;CL:0000056!7.82e-14!57;CL:0000355!7.82e-14!57;CL:0000187!7.95e-14!54;CL:0000183!1.20e-12!59;CL:0000057!7.38e-12!75;CL:0000048!9.89e-12!430;CL:0000034!2.20e-11!444;CL:0000723!7.03e-11!436;CL:0000192!2.76e-10!42;CL:0000514!2.76e-10!42;CL:0000359!1.10e-09!32;CL:0002334!2.06e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.53e-16;33!CL:0002057;2.53e-16;33!CL:0000473;2.62e-10;39!CL:0000234;2.62e-10;39!CL:0000359;2.16e-09;32!CL:0000576;6.27e-09;48!CL:0000393;2.50e-08;61!CL:0000211;2.50e-08;61!CL:0000187;2.96e-08;55!CL:0000192;4.52e-08;43!CL:0002334;1.51e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.08e-18,42;CL:0002057,8.08e-18,42;CL:0000393,4.49e-15,61;CL:0000211,4.49e-15,61;CL:0000680,2.82e-14,58;CL:0000056,2.82e-14,58;CL:0000355,2.82e-14,58;CL:0000187,2.90e-14,55;CL:0000473,1.24e-13,48;CL:0000234,1.24e-13,48;CL:0000048,3.14e-13,427;CL:0000034,6.49e-13,441;CL:0000723,2.08e-12,433;CL:0000057,2.82e-12,76;CL:0000192,1.27e-10,43;CL:0000514,1.27e-10,43;CL:0000359,6.42e-10,32;CL:0002194,1.08e-07,59;CL:0000576,1.08e-07,59;CL:0000040,1.08e-07,59;CL:0000559,1.08e-07,59;CL:0002334,1.39e-07,12;CL:0002009,7.67e-07,61 | |||
|ontology_enrichment_development_v019=CL:0002057;3.18e-13;42!CL:0000514;4.52e-08;43!CL:0000355;4.80e-08;58 | |||
|ontology_enrichment_disease=DOID:2394!3.47e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.00e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.23e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000468!3.20e-17!659;UBERON:0002204!2.61e-16!167;UBERON:0000914!3.35e-14!83;UBERON:0002329!3.35e-14!83;UBERON:0003077!3.35e-14!83;UBERON:0003059!3.35e-14!83;UBERON:0007282!3.35e-14!83;UBERON:0009618!3.35e-14!83;UBERON:0007285!3.35e-14!83;UBERON:0001134!4.75e-14!61;UBERON:0002036!4.75e-14!61;UBERON:0003082!4.75e-14!61;UBERON:0000467!4.81e-14!625;UBERON:0000480!9.28e-14!626;UBERON:0002385!9.63e-14!63;UBERON:0001015!9.63e-14!63;UBERON:0000383!9.63e-14!63;UBERON:0004290!1.65e-13!70;UBERON:0000922!7.82e-12!612;UBERON:0002050!2.15e-10!605;UBERON:0005423!2.15e-10!605;UBERON:0000923!3.74e-10!604;UBERON:0005291!3.74e-10!604;UBERON:0006598!3.74e-10!604;UBERON:0002532!3.74e-10!604;UBERON:0000486!1.80e-09!82;UBERON:0000479!1.97e-09!787;UBERON:0003081!5.31e-09!216;UBERON:0000926!7.47e-09!448;UBERON:0004120!7.47e-09!448;UBERON:0006603!7.47e-09!448;UBERON:0000948!1.49e-08!24;UBERON:0005498!1.49e-08!24;UBERON:0004140!1.49e-08!24;UBERON:0009881!1.49e-08!24;UBERON:0004141!1.49e-08!24;UBERON:0003084!1.49e-08!24;UBERON:0007005!1.49e-08!24;UBERON:0004139!1.49e-08!24;UBERON:0004291!1.49e-08!24;UBERON:0007100!3.98e-08!27;UBERON:0001009!4.61e-08!113;UBERON:0004535!4.81e-08!110;UBERON:0005256!7.19e-08!143;UBERON:0004872!4.11e-07!84;UBERON:0001637!5.32e-07!42;UBERON:0003509!5.32e-07!42;UBERON:0004572!5.32e-07!42;UBERON:0000062!6.02e-07!511;UBERON:0004573!6.61e-07!33;UBERON:0004571!6.61e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0000948;4.00e-08;22!UBERON:0002385;5.84e-08;31!UBERON:0001015;5.84e-08;31!UBERON:0000383;5.84e-08;31!UBERON:0007100;1.01e-07;25!UBERON:0004573;9.22e-07;33!UBERON:0004571;9.22e-07;33 | |||
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| ||
|short_description=p4@VCAN | |short_description=p4@VCAN | ||
}} | }} |
Latest revision as of 00:40, 19 September 2015
Short description: | p4@VCAN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_VCAN_5end |
Coexpression cluster: | C4524_Fibroblast_Smooth_Preadipocyte_Lens_CD14_mesenchymal_serous |
Association with transcript: | 30bp_to_ENST00000342785, ENST00000343200, NM_001126336, NM_001164097, NM_001164098, NM_004385, uc003kih.3, uc003kii.3, uc003kij.3, uc003kik.3, uc010jau.2_5end |
EntrezGene: | VCAN |
HGNC: | 2464 |
UniProt: | P13611Q86W61Q6MZK8Q59FG9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 8.08e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.08e-18 | 42 |
electrically responsive cell | 4.49e-15 | 61 |
electrically active cell | 4.49e-15 | 61 |
muscle precursor cell | 2.82e-14 | 58 |
myoblast | 2.82e-14 | 58 |
multi-potent skeletal muscle stem cell | 2.82e-14 | 58 |
muscle cell | 2.90e-14 | 55 |
defensive cell | 1.24e-13 | 48 |
phagocyte | 1.24e-13 | 48 |
multi fate stem cell | 3.14e-13 | 427 |
stem cell | 6.49e-13 | 441 |
somatic stem cell | 2.08e-12 | 433 |
fibroblast | 2.82e-12 | 76 |
smooth muscle cell | 1.27e-10 | 43 |
smooth muscle myoblast | 1.27e-10 | 43 |
vascular associated smooth muscle cell | 6.42e-10 | 32 |
monopoietic cell | 1.08e-07 | 59 |
monocyte | 1.08e-07 | 59 |
monoblast | 1.08e-07 | 59 |
promonocyte | 1.08e-07 | 59 |
preadipocyte | 1.39e-07 | 12 |
macrophage dendritic cell progenitor | 7.67e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.23e-08 | 14 |