FFCP PHASE1:Hg19::chr5:82767238..82767265,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1462 | |EntrezGene=1462 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2464 | |HGNC=2464 | ||
|TSSclassifier=strong | |||
|UniProt=P13611 | |UniProt=P13611 | ||
|association_with_transcript=-18bp_to_ENST00000265077_5end | |association_with_transcript=-18bp_to_ENST00000265077_5end | ||
|cluster_id=chr5:82767238..82767265,+ | |||
|coexpression_cluster_id=C4523 | |||
|description=CAGE_peak_6_at_VCAN_5end | |description=CAGE_peak_6_at_VCAN_5end | ||
|id=chr5:82767238..82767265,+ | |id=chr5:82767238..82767265,+ | ||
|ontology_enrichment_celltype=CL:0000055!3.70e-14!180;CL:0002057!1.05e-13!42;CL:0000860!1.86e-11!45;CL:0000393!1.34e-10!60;CL:0000211!1.34e-10!60;CL:0000680!3.13e-08!57;CL:0000056!3.13e-08!57;CL:0000355!3.13e-08!57;CL:0000187!4.16e-08!54;CL:0000183!1.69e-07!59 | |ontology_enrichment_celltype=CL:0000055!3.70e-14!180;CL:0002057!1.05e-13!42;CL:0000860!1.86e-11!45;CL:0000393!1.34e-10!60;CL:0000211!1.34e-10!60;CL:0000680!3.13e-08!57;CL:0000056!3.13e-08!57;CL:0000355!3.13e-08!57;CL:0000187!4.16e-08!54;CL:0000183!1.69e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000860;6.65e-12;33!CL:0002057;6.65e-12;33!CL:0000576;1.35e-07;48!CL:0000473;3.53e-07;39!CL:0000234;3.53e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.48e-14,42;CL:0002057,2.48e-14,42;CL:0000473,7.07e-11,48;CL:0000234,7.07e-11,48;CL:0000393,2.55e-10,61;CL:0000211,2.55e-10,61;CL:0000034,7.87e-08,441;CL:0000187,1.60e-07,55;CL:0000680,3.46e-07,58;CL:0000056,3.46e-07,58;CL:0000355,3.46e-07,58;CL:0000048,3.81e-07,427;CL:0002194,8.00e-07,59;CL:0000576,8.00e-07,59;CL:0000040,8.00e-07,59;CL:0000559,8.00e-07,59 | |||
|ontology_enrichment_development_v019=CL:0002057;2.55e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!4.23e-13!659;UBERON:0002204!1.96e-11!167;UBERON:0000922!2.67e-10!612;UBERON:0000467!7.37e-10!625;UBERON:0000480!1.15e-09!626;UBERON:0002050!3.07e-08!605;UBERON:0005423!3.07e-08!605;UBERON:0001134!4.06e-08!61;UBERON:0002036!4.06e-08!61;UBERON:0003082!4.06e-08!61;UBERON:0000923!5.98e-08!604;UBERON:0005291!5.98e-08!604;UBERON:0006598!5.98e-08!604;UBERON:0002532!5.98e-08!604;UBERON:0002385!8.84e-08!63;UBERON:0001015!8.84e-08!63;UBERON:0000383!8.84e-08!63;UBERON:0000914!1.23e-07!83;UBERON:0002329!1.23e-07!83;UBERON:0003077!1.23e-07!83;UBERON:0003059!1.23e-07!83;UBERON:0007282!1.23e-07!83;UBERON:0009618!1.23e-07!83;UBERON:0007285!1.23e-07!83;UBERON:0001017!2.64e-07!82;UBERON:0004290!6.92e-07!70 | |ontology_enrichment_uberon=UBERON:0000468!4.23e-13!659;UBERON:0002204!1.96e-11!167;UBERON:0000922!2.67e-10!612;UBERON:0000467!7.37e-10!625;UBERON:0000480!1.15e-09!626;UBERON:0002050!3.07e-08!605;UBERON:0005423!3.07e-08!605;UBERON:0001134!4.06e-08!61;UBERON:0002036!4.06e-08!61;UBERON:0003082!4.06e-08!61;UBERON:0000923!5.98e-08!604;UBERON:0005291!5.98e-08!604;UBERON:0006598!5.98e-08!604;UBERON:0002532!5.98e-08!604;UBERON:0002385!8.84e-08!63;UBERON:0001015!8.84e-08!63;UBERON:0000383!8.84e-08!63;UBERON:0000914!1.23e-07!83;UBERON:0002329!1.23e-07!83;UBERON:0003077!1.23e-07!83;UBERON:0003059!1.23e-07!83;UBERON:0007282!1.23e-07!83;UBERON:0009618!1.23e-07!83;UBERON:0007285!1.23e-07!83;UBERON:0001017!2.64e-07!82;UBERON:0004290!6.92e-07!70 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,1.34e-08,167;UBERON:0000948,3.57e-07,24;UBERON:0005498,3.57e-07,24;UBERON:0004140,3.57e-07,24;UBERON:0009881,3.57e-07,24;UBERON:0004141,3.57e-07,24;UBERON:0003084,3.57e-07,24;UBERON:0007005,3.57e-07,24;UBERON:0004139,3.57e-07,24;UBERON:0004291,3.57e-07,24;UBERON:0000926,6.77e-07,315;UBERON:0004120,6.77e-07,315;UBERON:0006603,6.77e-07,315;UBERON:0001134,9.22e-07,62;UBERON:0002036,9.22e-07,62;UBERON:0003082,9.22e-07,62 | |||
|phase1_expression=0.726713517082227,1.2846031433459,1.26858963686374,0,2.23480547213644,3.48935409640147,2.53299878168311,0,0.783556884599516,0.245733936501509,0,0,0,0.866364470720326,1.32558950291166,2.6893005858071,1.80808358407193,0.730310090387373,1.46379839637152,3.44738962615006,1.63200552995402,3.44800193625897,5.72471974262113,4.10623275218653,6.77930253811935,0.0764134057479513,0.164201178899891,0,2.36018566109342,1.91914699048606,2.94150634300544,0,0,0,0,0,0,4.43196326825502,3.60980005446255,4.77423915574874,0.223915474239924,0,0.77272670290256,3.34415949192999,1.51150377475524,1.94067248950253,3.25400651667958,4.11167888021826,1.85823822537062,4.02769349251011,2.81776777182011,1.6553756092201,4.48169384957604,1.93645405075148,2.70852973188684,1.50593871634084,2.45615535052061,2.24723484445085,3.67300670845083,1.60464513538047,4.47535988059329,0.989553900560148,1.99463657621632,2.13112375266347,2.03146467040009,2.26954089876456,1.24564449799115,3.26623264833766,3.12889751052121,2.17188844705117,3.63239701580021,3.31449872388808,0.632924774881769,2.11255286311942,2.12604299965044,1.46761051855863,5.84108881961775,4.05477610672067,6.26829788118613,1.14005097496499,0.99458338599545,0.547992461293902,0,0,0,0,0,0,1.32208974556972,0,0,0.587237189370939,0,0,1.12101712596307,0.526768169550154,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0.301150238155546,0.895906278080929,1.24930726552346,0,0,0,0,0,2.43806866313962,4.02420515822182,2.17366355134002,2.53007406669196,0.50133791063589,1.30361867064741,1.5905718941022,0.486634870302636,8.50813354476611,8.64744650103999,11.155017783027,0.458426764241994,0,0,0,0.348259474598534,0.132957960518865,0.715471872916026,0.571994910780128,0.74291500265913,0,0.860234595106124,0,0,0,0,0,1.03366703667732,0.71153252537342,0.66944122552934,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98183171017191,3.16576279161449,6.48804985984772,18.3575437279241,2.83734705758686,3.36406560085384,0,3.20667812942308,6.22422070799533,2.96363478553314,2.94231425604226,1.51357427644931,1.15235184896,0,0,0,0.298897361103602,1.05691048779388,0.809364721840658,0.98315564691574,0.61246251376468,0.859840221182376,0.826606249406124,2.37600571456411,1.23633464639278,0,0,2.52504170931099,2.50237039743928,0,0.438977620880838,0.919463387397059,2.70428506031874,1.24775401476023,4.12596162084383,1.06778694409284,0.847727604638247,4.20127534518163,1.03052529238439,2.83404594050192,1.30281799432113,5.90717162844432,1.75386609290158,3.02920529092937,1.10459878370759,0.161646056818812,4.9701342952326,1.10827308050404,0.339121184620975,0,0,0,15.6126343845882,11.6626196122907,11.3870064012128,18.2443456827052,15.3915719034133,16.7889585174882,0,3.85944562915731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0.860919069801795,3.08822058537346,0,0,0,0.277765335475589,0.325808305310325,0,0,1.27523445472584,9.27528684462991,0,0,0,0,0,0.738651018262192,0,0.594524649154913,0.93733833986777,0.503946384596579,0.141775097242386,0.268675568108545,0.290633938513962,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0.672786506072164,2.1798003441664,1.10007428731425,1.80980402060889,3.57656445851882,0,1.06375246633948,0,0,0,0.266422179016099,0.57191197463259,0,0,1.30294473717494,0,0.791951872933429,0,1.74306691720059,0.199945982364114,0,0,0,1.4377491329495,2.29723871668228,1.42636905040718,0.868687840005475,0.205476322550383,2.50685348535854,0,0.591092280605782,0,0.128343036279748,2.7950408664471,3.90419561572865,1.54657762555539,5.36052049069916,3.18969375826582,0,0,0,3.18997878469764,1.00034104211935,0.271265023699736,2.70362119990049,0.713715955188647,1.10391690523754,1.7571212248907,0.601892199455438,2.27407504055985,2.0694614258501,1.32845119707087,0.368738337083406,1.91143951829782,0.195801157462741,0.343143423810856,2.89475236572042,1.94142780736755,1.06727557803444,0,0,0,1.24053903909388,8.90079445070762,1.68396056659844,1.40953064181271,1.53512174720011,3.21707842287215,0,1.23367755042124,1.59805552781814,2.13530605635904,2.07701771673448,1.27831416305955,2.53804844142407,1.20303882181971,0.552485933615378,0.574072240823034,0.728364672026868,0.131124414959424,1.35359883872224,3.08061348417659,1.56869953835371,0,3.58875538235777,0,0,1.72732732881711,0,2.16757150035082,0.501689773854853,0.509752546090077,2.49322802678617,2.23874754722178,0,0,0,0,1.30151357865721,1.13345112812495,0.640986253728404,0.990113999047056,1.14853107599234,0,3.21367859688319,5.22021878777459,1.3864375540318,2.14905144616581,2.06754858726796,2.90034661144339,1.88521702088497,3.40906509664404,3.73934549716297,0.661139661443912,0.960950336825531,0.382838137483752,0.2023155617111,0,14.4813679542094,3.485186350803,1.84820148105653,2.12922412126809,1.73986598415015,1.66791797193528,1.86062352764589,2.232950216158,7.59310619324942,1.14378116354295,0,2.1396949401696,2.54562598340749,0.78494864019923,1.79872457583315,2.74537029736055,3.76999687506197,0.404364963146632,0,0.842516912477962,0.48763373908959,0.487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| ||
|short_description=p6@VCAN | |short_description=p6@VCAN | ||
}} | }} |
Latest revision as of 00:36, 19 September 2015
Short description: | p6@VCAN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_VCAN_5end |
Coexpression cluster: | C4523_Fibroblast_iPS_H9_serous_Smooth_HES3GFP_hepatoblastoma |
Association with transcript: | -18bp_to_ENST00000265077_5end |
EntrezGene: | VCAN |
HGNC: | 2464 |
UniProt: | P13611 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.48e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.48e-14 | 42 |
defensive cell | 7.07e-11 | 48 |
phagocyte | 7.07e-11 | 48 |
electrically responsive cell | 2.55e-10 | 61 |
electrically active cell | 2.55e-10 | 61 |
stem cell | 7.87e-08 | 441 |
muscle cell | 1.60e-07 | 55 |
muscle precursor cell | 3.46e-07 | 58 |
myoblast | 3.46e-07 | 58 |
multi-potent skeletal muscle stem cell | 3.46e-07 | 58 |
multi fate stem cell | 3.81e-07 | 427 |
monopoietic cell | 8.00e-07 | 59 |
monocyte | 8.00e-07 | 59 |
monoblast | 8.00e-07 | 59 |
promonocyte | 8.00e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 1.34e-08 | 167 |
heart | 3.57e-07 | 24 |
primitive heart tube | 3.57e-07 | 24 |
primary heart field | 3.57e-07 | 24 |
anterior lateral plate mesoderm | 3.57e-07 | 24 |
heart tube | 3.57e-07 | 24 |
heart primordium | 3.57e-07 | 24 |
cardiac mesoderm | 3.57e-07 | 24 |
cardiogenic plate | 3.57e-07 | 24 |
heart rudiment | 3.57e-07 | 24 |
mesoderm | 6.77e-07 | 315 |
mesoderm-derived structure | 6.77e-07 | 315 |
presumptive mesoderm | 6.77e-07 | 315 |
skeletal muscle tissue | 9.22e-07 | 62 |
striated muscle tissue | 9.22e-07 | 62 |
myotome | 9.22e-07 | 62 |