FFCP PHASE1:Hg19::chr7:54614335..54614351,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=222008 | |EntrezGene=222008 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28499 | |HGNC=28499 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-13bp_to_ENST00000466888_5end | |||
|cluster_id=chr7:54614335..54614351,+ | |||
|description=CAGE_peak_19_at_VSTM2A_5end | |||
|id=chr7:54614335..54614351,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000333;6.34e-08;5 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005425;8.34e-34;1!UBERON:0003056;3.06e-12;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:154;5.96e-18;2!DOID:4236;5.96e-18;2!DOID:5409;1.17e-09;4!DOID:1115;1.25e-07;20!DOID:169;8.25e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:154,6.48e-18,2;DOID:4236,6.48e-18,2;DOID:5409,1.12e-09,4;DOID:1115,1.29e-07,20;DOID:169,8.02e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0000073!2.17e-14!94;UBERON:0001016!2.17e-14!94;UBERON:0002020!2.70e-14!34;UBERON:0003528!2.70e-14!34;UBERON:0001049!3.91e-13!57;UBERON:0005068!3.91e-13!57;UBERON:0006241!3.91e-13!57;UBERON:0007135!3.91e-13!57;UBERON:0001869!3.78e-11!32;UBERON:0002616!5.81e-11!59;UBERON:0002791!9.57e-11!33;UBERON:0005743!1.34e-10!86;UBERON:0001950!1.42e-10!20;UBERON:0001893!2.30e-10!34;UBERON:0001017!4.40e-10!82;UBERON:0002780!8.28e-10!41;UBERON:0001890!8.28e-10!41;UBERON:0006240!8.28e-10!41;UBERON:0000988!1.37e-09!3;UBERON:0003080!1.63e-09!42;UBERON:0002619!1.63e-09!22;UBERON:0003075!1.75e-09!86;UBERON:0007284!1.75e-09!86;UBERON:0002346!7.24e-09!90;UBERON:0000955!1.15e-08!69;UBERON:0006238!1.15e-08!69;UBERON:0002308!1.86e-08!9;UBERON:0000125!1.86e-08!9;UBERON:0000956!3.14e-08!25;UBERON:0000203!3.14e-08!25;UBERON:0003056!6.04e-08!61;UBERON:0004121!1.02e-07!169;UBERON:0000924!2.12e-07!173;UBERON:0006601!2.12e-07!173;UBERON:0000013!4.75e-07!5;UBERON:0002410!4.75e-07!5;UBERON:0002148!4.82e-07!2;UBERON:0009662!4.82e-07!2;UBERON:0000473!7.61e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;8.34e-34;1!UBERON:0001785;8.34e-34;1!UBERON:0002464;8.34e-34;1!UBERON:0004904;8.34e-34;1!UBERON:0001021;8.34e-34;1!UBERON:0003714;1.17e-17;2!UBERON:0005162;1.17e-17;2!UBERON:0000122;1.17e-17;2!UBERON:0000010;1.31e-15;8!UBERON:0000013;6.34e-08;5!UBERON:0002410;6.34e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,9.85e-34,1;UBERON:0001785,9.85e-34,1;UBERON:0002464,9.85e-34,1;UBERON:0004904,9.85e-34,1;UBERON:0001021,9.85e-34,1;UBERON:0003902,9.85e-34,1;UBERON:0005425,9.85e-34,1;UBERON:0003714,1.27e-17,2;UBERON:0005162,1.27e-17,2;UBERON:0000122,1.27e-17,2;UBERON:0000010,1.31e-15,8;UBERON:0001781,1.70e-09,4;UBERON:0000013,6.13e-08,5;UBERON:0002410,6.13e-08,5;UBERON:0000966,9.49e-07,6;UBERON:0005388,9.49e-07,6;UBERON:0001802,9.49e-07,6 | |||
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| ||
|short_description=p19@VSTM2A | |||
}} | }} |
Latest revision as of 00:10, 19 September 2015
Short description: | p19@VSTM2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_VSTM2A_5end |
Coexpression cluster: | NA |
Association with transcript: | -13bp_to_ENST00000466888_5end |
EntrezGene: | VSTM2A |
HGNC: | 28499 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 9.85e-34 | 1 |
cranial nerve | 9.85e-34 | 1 |
nerve trunk | 9.85e-34 | 1 |
nerve connecting eye with brain | 9.85e-34 | 1 |
nerve | 9.85e-34 | 1 |
retinal neural layer | 9.85e-34 | 1 |
presumptive neural retina | 9.85e-34 | 1 |
neural tissue | 1.27e-17 | 2 |
multi cell component structure | 1.27e-17 | 2 |
neuron projection bundle | 1.27e-17 | 2 |
peripheral nervous system | 1.31e-15 | 8 |
layer of retina | 1.70e-09 | 4 |
sympathetic nervous system | 6.13e-08 | 5 |
autonomic nervous system | 6.13e-08 | 5 |
retina | 9.49e-07 | 6 |
photoreceptor array | 9.49e-07 | 6 |
posterior segment of eyeball | 9.49e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
mixed cell type cancer | 6.48e-18 | 2 |
carcinosarcoma | 6.48e-18 | 2 |
lung small cell carcinoma | 1.12e-09 | 4 |
sarcoma | 1.29e-07 | 20 |
neuroendocrine tumor | 8.02e-07 | 6 |