FFCP PHASE1:Hg19::chr18:21269377..21269400,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3909 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6483 | |||
|TSSclassifier=strong | |||
|UniProt=Q16787,Q6VU67,F5GWM0,F5H8G3,Q566Q1 | |||
|association_with_transcript=-161bp_to_ENST00000313654,ENST00000399516,ENST00000416669,ENST00000538801,NM_001127717,NM_198129,uc002kuq.2,uc002kur.2,uc010dlv.1_5end | |||
|cluster_id=chr18:21269377..21269400,+ | |||
|coexpression_cluster_id=C96 | |||
|description=CAGE_peak_5_at_LAMA3_5end | |||
|id=chr18:21269377..21269400,+ | |||
|ontology_enrichment_celltype=CL:0000066!7.75e-11!254;CL:0000076!8.31e-10!62 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005062;6.84e-08;4!UBERON:0007284;6.84e-08;4 | |||
|ontology_enrichment_disease=DOID:305!2.41e-09!106;DOID:0050687!4.25e-07!143;DOID:1749!7.55e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005157!2.76e-10!51;UBERON:0003064!3.41e-10!37;UBERON:0006554!3.72e-10!44;UBERON:0001008!1.21e-09!45;UBERON:0004119!1.52e-09!169;UBERON:0000925!1.52e-09!169;UBERON:0006595!1.52e-09!169;UBERON:0000064!2.68e-09!219;UBERON:0000481!2.78e-09!347;UBERON:0001007!9.29e-09!155;UBERON:0001555!9.29e-09!155;UBERON:0007026!9.29e-09!155;UBERON:0000062!1.77e-08!511;UBERON:0000922!4.25e-08!612;UBERON:0002050!5.27e-08!605;UBERON:0005423!5.27e-08!605;UBERON:0005156!7.20e-08!59;UBERON:0000990!7.20e-08!59;UBERON:0000923!1.13e-07!604;UBERON:0005291!1.13e-07!604;UBERON:0006598!1.13e-07!604;UBERON:0002532!1.13e-07!604;UBERON:0005153!3.19e-07!37;UBERON:0001004!3.76e-07!72;UBERON:0000161!5.01e-07!35;UBERON:0003937!5.02e-07!12;UBERON:0005399!5.02e-07!12;UBERON:0001046!5.23e-07!19;UBERON:0000467!6.41e-07!625;UBERON:0000162!7.25e-07!14;UBERON:0001353!7.25e-07!14;UBERON:0000163!7.25e-07!14;UBERON:0006866!7.25e-07!14;UBERON:0000164!7.25e-07!14;UBERON:0000931!7.25e-07!14;UBERON:0002367!7.69e-07!11;UBERON:0010147!7.69e-07!11;UBERON:0009846!7.69e-07!11;UBERON:0003353!7.69e-07!11;UBERON:0004902!7.69e-07!11;UBERON:0003820!7.69e-07!11;UBERON:0009847!7.69e-07!11;UBERON:0000480!8.41e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0010313;1.81e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005157,1.35e-10,47;UBERON:0010313,3.97e-08,10;UBERON:0002342,3.97e-08,10;UBERON:0005062,3.97e-08,10;UBERON:0006554,1.27e-07,47;UBERON:0001008,2.21e-07,48 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,2.21160542851358,9.76921635161399,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0.919421224478927,1.204823675113,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0.0945348171640679,0,0,2.03017567021455,1.45718115317017,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0.35576626268671,0.33472061276467,0,0.760272105718513,0,0.367663080345869,0.81014194788176,0.267899184852239,0.22452937262617,0.337834441449967,0,0,0.183201743930407,0,0,0,0,0,0.264818361626438,0,0.354668382198357,0,0,0,0,0,0.163461903113459,0,0,0.70296429550139,0,0.570471821544449,0,0.117434498643765,0,0,0,0.122834317311768,0.103325781175765,0,0.741800787835671,0.910161361938026,0,0,0.750711119231785,0,0,0.30648779579902,1.20190447125277,0.113432183160021,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0.969876340912871,0,0,0,0.193260853163297,0,0,0.243947412259191,0,0,0,0,0,0,0,0,0.464367928031979,0,0.236613600079688,0.337169380156203,1.20505514941741,0,0.217879444092406,1.66089433377768,0.539325232640658,0.196221465125346,0.769494313892781,0,0,0,0,0,0,0,0,0.983907508344908,0.686271241194102,0.109750285408626,0,0.402115889646523,0.0925884451585296,0,1.03993478527958,0,0.115930404975077,0,0,0,0,0,0,0.246217006087397,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0.257207374262142,0,0.532844358032199,0,0,0.823240336780769,0.325736184293735,0,0,0.602878754119172,0.871533458600294,1.89948683245908,0,0,0,0,0,1.42636905040718,0,2.4657158706046,0.179060963239896,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,1.24782516918484,0.356857977594324,0.473107245101804,0.35142424497814,0.300946099727719,0,0,0.664225598535437,0,0.60818530127658,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,1.48418066444991,0,0.177561725313127,0.164254312027618,0.519254429183621,0,1.45031339509947,0.200506470303285,0.644566922551274,1.49258782613989,0.910455840033585,1.44236856455367,0,0.231046011313244,1.56869953835371,2.92278449306521,1.16106791782163,0,0,0.647747748306418,0,1.62567862526312,0.501689773854853,0.764628819135115,0.831076008928724,0.895499018888713,0,0,1.28225062558195,0.328014645699706,0,1.854738209659,0.457847324091717,1.23764249880882,0,0.650060246036521,0,0.290012154876366,0,0,0.137836572484531,0.429680979473094,0.435050081742686,0.340906509664404,0,0.165284915360978,0.384380134730212,0.510450849978337,0.30347334256665,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0.636406495851874,0,0,0,0.235624804691373,0,0,0,0.48763373908959,0.487426979262569,0,0.682499557039929,1.41405431953713,0,0,0,0,0,0,0.202910376962704,0,0,0,0,0,0.354761064070598,0.211107635297664,0,0.379473173765715,0,0.673554789078584,3.35151137767894,0,1.41215701165169,0,1.68471475667626,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.614481528616916,0.223676107892416,0.166849141711909,0,0,0,0,0,0,0,0.586032717087576,0.242721043499027,0,0.284136146806413,0.23874448473769,1.48482340416319,0,0,0.984685914873589,1.78093928036649,0,0.844501632511974,1.39473591775749,1.65770349318689,0,0,0,0.311039587661807,0.179736702294654,0,0,0.887790650732402,0,0,0,0.0927680981618513,0,0.260427761085233,0,0,2.61724931056649,0,0.472775363535873,4.48166385213904,1.16641845353302,2.43074992906609,0,0.120596438625408,0,0.331737779793674,0,0.219385397153973,0.544692317594951,1.25481369850743,4.00141344219745,0,0,0,0.108647371922008,0.31900115973192,0,0,0,0,0,0,0,0,0,0,6.11894387131278,0.816164040795739,1.55488378577335,0,0,0.530745387020035,0.611030144933625,0,0,0,0.067401132980677,1.60515529459758,0.234264445725339,0,0.19566461893209,0,0,2.41981432097328,0.61214552326098,0.379119477770928,2.40517471063188,5.91022690964309,0,0.992975867626496,0.627865836814451,1.19472429772959,1.13843818411917,0,0.694238953340524,0.979923974143776,1.82824333818845,1.7472666824203,0,0.967563312890852,1.24251839046515,0.410577285266046,0.581934098930517,0,0.451961481561065,0.137041924646751,0,0.316553979779393,0.782205530939212,2.00397050628834,0.426905989478705,0,0.432271251462318,0,0,0.14405479798815,0.745515213392595,0,0.407712618220842,0.418411385249333,0.611989305817931,0.288950589901519,0.600420288709789,0.273810757783986,0,0,2.36598618851383,1.39641200636127,1.14580212005842,1.43574604915363,1.79711100449092,0,0,1.2764859772478,0,0,0,0,0,0,0,0,0.408610218334727,0.160753148465019,0,0,0,0,0.546746009922222,0,0.157611414598396,0.209818352539992,0.105600336519406,0,1.91915197319445,0,0,0,4.3439968140297,0.864221491201268,0.326587360109409,1.19730191562487,0.082092520749339,0,0.226624183040251,0,0,0.129282956361551,0.13223260174269,0.171086837884329,0,6.51403216662938,5.18774206828898,9.11325921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| |||
|short_description=p5@LAMA3 | |||
}} |
Latest revision as of 23:54, 18 September 2015
Short description: | p5@LAMA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LAMA3_5end |
Coexpression cluster: | C96_non_acute_tonsil_spleen_Burkitt_lymphoma_appendix |
Association with transcript: | -161bp_to_ENST00000313654, ENST00000399516, ENST00000416669, ENST00000538801, NM_001127717, NM_198129, uc002kuq.2, uc002kur.2, uc010dlv.1_5end |
EntrezGene: | LAMA3 |
HGNC: | 6483 |
UniProt: | Q16787Q6VU67F5GWM0F5H8G3Q566Q1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial fold | 1.35e-10 | 47 |
neural crest-derived structure | 3.97e-08 | 10 |
neural crest | 3.97e-08 | 10 |
neural fold | 3.97e-08 | 10 |
urinary system structure | 1.27e-07 | 47 |
renal system | 2.21e-07 | 48 |