FFCP PHASE1:Hg19::chr5:81046922..81046933,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:81046922..81046933,- to FFCP PHASE1:Hg19::chr5:81046922..81046933,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23635 | |EntrezGene=23635 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15831 | |HGNC=15831 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=5bp_to_,-5bp_to_ENST00000507472,uc003khn.2_5end | |||
|cluster_id=chr5:81046922..81046933,- | |||
|coexpression_cluster_id=C4522 | |||
|description=CAGE_peak_3_at_SSBP2_5end | |||
|id=chr5:81046922..81046933,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.12e-19!115;UBERON:0001049!1.98e-16!57;UBERON:0005068!1.98e-16!57;UBERON:0006241!1.98e-16!57;UBERON:0007135!1.98e-16!57;UBERON:0001017!1.96e-15!82;UBERON:0005743!1.45e-14!86;UBERON:0002616!2.98e-14!59;UBERON:0003080!3.92e-14!42;UBERON:0000955!6.46e-14!69;UBERON:0006238!6.46e-14!69;UBERON:0002780!1.45e-13!41;UBERON:0001890!1.45e-13!41;UBERON:0006240!1.45e-13!41;UBERON:0002020!3.92e-13!34;UBERON:0003528!3.92e-13!34;UBERON:0001893!6.00e-13!34;UBERON:0002791!1.51e-12!33;UBERON:0000073!1.95e-12!94;UBERON:0001016!1.95e-12!94;UBERON:0001869!3.34e-12!32;UBERON:0003075!5.75e-12!86;UBERON:0007284!5.75e-12!86;UBERON:0002346!2.00e-11!90;UBERON:0003056!1.00e-10!61;UBERON:0000956!1.19e-09!25;UBERON:0000203!1.19e-09!25;UBERON:0000153!1.29e-09!129;UBERON:0007811!1.29e-09!129;UBERON:0002619!7.09e-09!22;UBERON:0000033!2.62e-08!123;UBERON:0001950!3.67e-08!20;UBERON:0004121!1.63e-07!169;UBERON:0000924!2.49e-07!173;UBERON:0006601!2.49e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0002791;2.50e-11;32!UBERON:0001869;4.88e-11;32!UBERON:0003528;6.40e-11;34!UBERON:0002020;6.40e-11;34!UBERON:0001893;8.55e-11;34!UBERON:0002780;1.61e-10;41!UBERON:0001890;1.61e-10;41!UBERON:0000956;1.89e-09;25!UBERON:0000203;1.89e-09;25!UBERON:0000073;3.39e-09;53!UBERON:0002616;3.39e-09;53!UBERON:0002619;1.68e-08;22!UBERON:0001950;1.06e-07;20!UBERON:0001017;6.55e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.87e-20,114;UBERON:0001049,6.35e-17,56;UBERON:0005068,6.35e-17,56;UBERON:0006241,6.35e-17,56;UBERON:0007135,6.35e-17,56;UBERON:0001017,1.00e-15,81;UBERON:0000073,1.20e-15,53;UBERON:0002616,1.20e-15,53;UBERON:0002780,2.27e-14,41;UBERON:0001890,2.27e-14,41;UBERON:0003080,2.27e-14,41;UBERON:0006240,2.27e-14,41;UBERON:0003528,3.35e-14,34;UBERON:0002020,3.35e-14,34;UBERON:0000955,5.01e-14,68;UBERON:0006238,5.01e-14,68;UBERON:0001893,5.34e-14,34;UBERON:0001016,7.77e-14,89;UBERON:0002791,2.71e-13,32;UBERON:0001869,3.48e-13,32;UBERON:0003075,1.89e-12,82;UBERON:0007284,1.89e-12,82;UBERON:0002346,6.03e-12,86;UBERON:0000956,2.12e-10,25;UBERON:0000203,2.12e-10,25;UBERON:0003056,1.21e-09,61;UBERON:0002619,1.50e-09,22;UBERON:0001950,9.01e-09,20;UBERON:0010371,9.02e-09,104;UBERON:0004121,4.80e-08,171;UBERON:0000924,4.80e-08,171;UBERON:0006601,4.80e-08,171;UBERON:0010314,5.20e-07,132 | |||
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| ||
|short_description=p3@SSBP2 | |||
}} | }} |
Latest revision as of 23:46, 18 September 2015
Short description: | p3@SSBP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SSBP2_5end |
Coexpression cluster: | C4522_non_parietal_occipital_thymus_temporal_duodenum_Hodgkin |
Association with transcript: | 5bp_to_, -5bp_to_ENST00000507472, uc003khn.2_5end |
EntrezGene: | SSBP2 |
HGNC: | 15831 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 3.87e-20 | 114 |
neural tube | 6.35e-17 | 56 |
neural rod | 6.35e-17 | 56 |
future spinal cord | 6.35e-17 | 56 |
neural keel | 6.35e-17 | 56 |
central nervous system | 1.00e-15 | 81 |
regional part of nervous system | 1.20e-15 | 53 |
regional part of brain | 1.20e-15 | 53 |
regional part of forebrain | 2.27e-14 | 41 |
forebrain | 2.27e-14 | 41 |
anterior neural tube | 2.27e-14 | 41 |
future forebrain | 2.27e-14 | 41 |
brain grey matter | 3.35e-14 | 34 |
gray matter | 3.35e-14 | 34 |
brain | 5.01e-14 | 68 |
future brain | 5.01e-14 | 68 |
telencephalon | 5.34e-14 | 34 |
nervous system | 7.77e-14 | 89 |
regional part of telencephalon | 2.71e-13 | 32 |
cerebral hemisphere | 3.48e-13 | 32 |
neural plate | 1.89e-12 | 82 |
presumptive neural plate | 1.89e-12 | 82 |
neurectoderm | 6.03e-12 | 86 |
cerebral cortex | 2.12e-10 | 25 |
pallium | 2.12e-10 | 25 |
pre-chordal neural plate | 1.21e-09 | 61 |
regional part of cerebral cortex | 1.50e-09 | 22 |
neocortex | 9.01e-09 | 20 |
ecto-epithelium | 9.02e-09 | 104 |
ectoderm-derived structure | 4.80e-08 | 171 |
ectoderm | 4.80e-08 | 171 |
presumptive ectoderm | 4.80e-08 | 171 |
structure with developmental contribution from neural crest | 5.20e-07 | 132 |