FFCP PHASE1:Hg19::chr12:52913230..52913233,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3852 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6442 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-329bp_to_ENST00000551188_5end | |||
|cluster_id=chr12:52913230..52913233,- | |||
|coexpression_cluster_id=C458 | |||
|description=CAGE_peak_11_at_KRT5_5end | |||
|id=chr12:52913230..52913233,- | |||
|ontology_enrichment_celltype=CL:0002076!4.77e-23!43;CL:0000223!9.22e-17!59;CL:0002251!1.36e-13!21;CL:0002368!9.81e-13!13;CL:0000066!5.21e-10!254;CL:0002623!6.71e-10!3;CL:0002159!2.59e-09!13;CL:0002166!7.34e-09!3;CL:0000784!1.18e-08!3;CL:0002327!5.65e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002623;2.81e-30;3!CL:0002076;2.72e-22;42!CL:0000622;1.96e-18;5!CL:0002368;5.35e-18;13!CL:0002251;5.35e-17;20!CL:0000154;1.84e-15;6!CL:0002328;1.16e-13;3!CL:0002252;4.80e-11;1!CL:0002336;1.05e-10;1!CL:0002261;1.05e-10;1!CL:0002170;1.05e-10;1!CL:0000150;1.73e-10;9!CL:0002202;4.81e-10;9!CL:0002632;4.81e-10;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,6.34e-31,42;CL:0002623,2.82e-30,3;CL:0000223,6.81e-22,58;CL:0000622,1.97e-18,5;CL:0002368,4.55e-18,13;CL:0002251,4.33e-17,20;CL:0000154,1.84e-15,6;CL:0002328,1.16e-13,3;CL:0002252,5.05e-11,1;CL:0002336,6.77e-11,1;CL:0002261,6.77e-11,1;CL:0002170,6.77e-11,1;CL:0000066,8.45e-11,253;CL:0000150,1.73e-10,9;CL:0002202,4.45e-10,9;CL:0002632,4.45e-10,9;CL:0002321,3.94e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000223;3.52e-11;58 | |||
|ontology_enrichment_disease=DOID:1749!1.14e-13!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003729!1.70e-13!5;UBERON:0001004!3.32e-12!72;UBERON:0000974!1.22e-11!10;UBERON:0000166!6.09e-11!21;UBERON:0003343!7.01e-11!4;UBERON:0004785!7.01e-11!4;UBERON:0000165!1.87e-09!28;UBERON:0000930!1.87e-09!28;UBERON:0000153!7.17e-09!129;UBERON:0007811!7.17e-09!129;UBERON:0000161!1.54e-08!35;UBERON:0001723!6.23e-08!3;UBERON:0001033!6.23e-08!3;UBERON:0010056!6.23e-08!3;UBERON:0004119!1.24e-07!169;UBERON:0000925!1.24e-07!169;UBERON:0006595!1.24e-07!169;UBERON:0000065!1.52e-07!53;UBERON:0006562!2.06e-07!11;UBERON:0000033!3.01e-07!123;UBERON:0004121!3.95e-07!169;UBERON:0001911!5.65e-07!4;UBERON:0005333!5.65e-07!4;UBERON:0008425!5.65e-07!4;UBERON:0005311!5.65e-07!4;UBERON:0003408!8.22e-07!10;UBERON:0000924!8.34e-07!173;UBERON:0006601!8.34e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0001044;1.84e-15;6!UBERON:0003293;1.84e-15;6!UBERON:0003294;1.84e-15;6!UBERON:0010047;1.84e-15;6!UBERON:0003408;1.84e-15;6!UBERON:0000167;1.84e-15;6!UBERON:0004815;1.16e-13;3!UBERON:0002031;1.16e-13;3!UBERON:0001041;1.75e-11;14!UBERON:0002185;1.48e-08;5!UBERON:0000165;1.58e-08;28!UBERON:0000161;1.96e-08;19!UBERON:0000166;1.96e-08;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001044,1.84e-15,6;UBERON:0003293,1.84e-15,6;UBERON:0003294,1.84e-15,6;UBERON:0010047,1.84e-15,6;UBERON:0000167,1.84e-15,6;UBERON:0004815,1.16e-13,3;UBERON:0002031,1.16e-13,3;UBERON:0003408,1.73e-09,10;UBERON:0001004,2.91e-09,74;UBERON:0002185,1.48e-08,5;UBERON:0000165,2.79e-08,29;UBERON:0000930,2.79e-08,29;UBERON:0004119,6.01e-08,160;UBERON:0000925,6.01e-08,160;UBERON:0006595,6.01e-08,160;UBERON:0000033,9.90e-08,56;UBERON:0000166,2.51e-07,22;UBERON:0000153,6.55e-07,62;UBERON:0007811,6.55e-07,62 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75826367343678,1.204823675113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728590576585084,1.11235332835329,0,0,0,1.19245312152671,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18047026071267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.768251997860379,0,0.301586917234893,1.66659201285353,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74935335947108,0.335964256397719,0.708875486211932,1.25381931783988,0.871901815541886,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,1.21251028578504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.40607764363942,0.644566922551274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413509717453592,0,0,0.852266274161009,0.534192213880424,1.15699440752685,0.768760269460425,0.638063562472921,1.8208400553999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48111056362756,1.34060455107157,0,0,0.43050537267123,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0,0,0,0,0,0,4.64475897881586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.455173793141999,0,0,0,0,0,0,0,0,0,0,0,0,1.11538995422883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293977192243133,0.34823682632161,0,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0.670869375198532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,0.624902039810533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16161013012681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699397538597222,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0,0,0,0,0,0,0.490738592505128,0.707818340086442,1.65085738669511,0.115525666150338,0,0,0,0,0,0,0,0,0,0.405225507710368,0,0,0.507326481551255,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0.0679697329768317,0.263091094251396,0,0,0,0,0,0,0,0,0,0,0,0,0,6.63091725321718,10.243108625637,5.53007729451273,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0.258355639344024,0.434523000071005,0,0,0,0.435433495793923,0.342233301085281,0,0.0717222053926763,0.332660356546013,0,0,0,0,0,0,0.406896178315738,0,0.402547587182052,0 | |||
|short_description=p11@KRT5 | |||
}} |
Latest revision as of 23:39, 18 September 2015
Short description: | p11@KRT5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_KRT5_5end |
Coexpression cluster: | C458_salivary_parietal_middle_locus_medial_occipital_globus |
Association with transcript: | -329bp_to_ENST00000551188_5end |
EntrezGene: | KRT5 |
HGNC: | 6442 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 6.34e-31 | 42 |
acinar cell of salivary gland | 2.82e-30 | 3 |
endodermal cell | 6.81e-22 | 58 |
acinar cell | 1.97e-18 | 5 |
respiratory epithelial cell | 4.55e-18 | 13 |
epithelial cell of alimentary canal | 4.33e-17 | 20 |
protein secreting cell | 1.84e-15 | 6 |
bronchial epithelial cell | 1.16e-13 | 3 |
epithelial cell of esophagus | 5.05e-11 | 1 |
buccal mucosa cell | 6.77e-11 | 1 |
endothelial cell of viscerocranial mucosa | 6.77e-11 | 1 |
keratinized cell of the oral mucosa | 6.77e-11 | 1 |
epithelial cell | 8.45e-11 | 253 |
glandular epithelial cell | 1.73e-10 | 9 |
epithelial cell of tracheobronchial tree | 4.45e-10 | 9 |
epithelial cell of lower respiratory tract | 4.45e-10 | 9 |
embryonic cell | 3.94e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
saliva-secreting gland | 1.84e-15 | 6 |
gland of oral region | 1.84e-15 | 6 |
gland of foregut | 1.84e-15 | 6 |
oral gland | 1.84e-15 | 6 |
oral cavity | 1.84e-15 | 6 |
lower respiratory tract epithelium | 1.16e-13 | 3 |
epithelium of bronchus | 1.16e-13 | 3 |
gland of gut | 1.73e-09 | 10 |
respiratory system | 2.91e-09 | 74 |
bronchus | 1.48e-08 | 5 |
mouth | 2.79e-08 | 29 |
stomodeum | 2.79e-08 | 29 |
endoderm-derived structure | 6.01e-08 | 160 |
endoderm | 6.01e-08 | 160 |
presumptive endoderm | 6.01e-08 | 160 |
head | 9.90e-08 | 56 |
oral opening | 2.51e-07 | 22 |
anterior region of body | 6.55e-07 | 62 |
craniocervical region | 6.55e-07 | 62 |