FFCP PHASE1:Hg19::chrX:107681605..107681614,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1288 | |EntrezGene=1288 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2208 | |HGNC=2208 | ||
|TSSclassifier=strong | |||
|UniProt=A8MXH5,Q14031 | |UniProt=A8MXH5,Q14031 | ||
|association_with_transcript=43bp_to_ENST00000394872,NM_033641,uc004env.3,uc004enx.2,uc010npk.2,uc011msn.1_5end | |association_with_transcript=43bp_to_ENST00000394872,NM_033641,uc004env.3,uc004enx.2,uc010npk.2,uc011msn.1_5end | ||
|cluster_id=chrX:107681605..107681614,- | |||
|description=CAGE_peak_6_at_COL4A6_5end | |description=CAGE_peak_6_at_COL4A6_5end | ||
|id=chrX:107681605..107681614,- | |id=chrX:107681605..107681614,- | ||
|ontology_enrichment_celltype=CL:0002076!2.05e-12!43;CL:0002251!1.66e-10!21;CL:0000622!4.27e-09!5;CL:0000066!5.08e-09!254;CL:0000223!6.87e-09!59;CL:0002321!4.51e-08!248;CL:0000154!1.89e-07!6;CL:0000220!2.30e-07!246;CL:0002322!2.94e-07!5;CL:0002368!6.10e-07!13 | |ontology_enrichment_celltype=CL:0002076!2.05e-12!43;CL:0002251!1.66e-10!21;CL:0000622!4.27e-09!5;CL:0000066!5.08e-09!254;CL:0000223!6.87e-09!59;CL:0002321!4.51e-08!248;CL:0000154!1.89e-07!6;CL:0000220!2.30e-07!246;CL:0002322!2.94e-07!5;CL:0002368!6.10e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0000622;1.87e-19;5!CL:0002623;7.78e-19;3!CL:0000154;3.02e-16;6!CL:0000244;8.30e-15;4!CL:0000731;8.30e-15;4!CL:0002195;1.65e-13;2!CL:0002571;1.65e-13;2!CL:0002536;1.21e-12;2!CL:0002595;2.37e-11;5!CL:0000150;7.04e-11;9!CL:0002076;2.51e-10;42!CL:0002251;3.52e-10;20!CL:0002368;1.76e-07;13!CL:0002252;3.72e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000622,1.35e-19,5;CL:0002623,4.15e-19,3;CL:0000154,2.31e-16,6;CL:0000244,7.62e-15,4;CL:0000731,7.62e-15,4;CL:0002195,1.77e-13,2;CL:0002571,1.77e-13,2;CL:0002536,1.45e-12,2;CL:0002076,1.89e-12,42;CL:0002595,2.64e-11,5;CL:0000150,5.90e-11,9;CL:0002251,2.40e-10,20;CL:0000066,1.59e-09,253;CL:0000223,1.57e-08,58;CL:0002368,1.85e-07,13;CL:0002252,2.37e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0006242;3.72e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;5.72e-09;3!DOID:127;5.72e-09;3!DOID:3112;3.72e-07;1!DOID:0060072;6.29e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,6.86e-09,3;DOID:127,6.86e-09,3;DOID:3112,2.84e-07,1;DOID:0060072,7.20e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0000922!7.74e-10!612;UBERON:0004119!1.45e-08!169;UBERON:0000925!1.45e-08!169;UBERON:0006595!1.45e-08!169;UBERON:0002050!7.39e-08!605;UBERON:0005423!7.39e-08!605;UBERON:0000923!1.95e-07!604;UBERON:0005291!1.95e-07!604;UBERON:0006598!1.95e-07!604;UBERON:0002532!1.95e-07!604;UBERON:0000468!2.61e-07!659;UBERON:0000161!3.06e-07!35;UBERON:0005910!6.23e-07!6 | |ontology_enrichment_uberon=UBERON:0000922!7.74e-10!612;UBERON:0004119!1.45e-08!169;UBERON:0000925!1.45e-08!169;UBERON:0006595!1.45e-08!169;UBERON:0002050!7.39e-08!605;UBERON:0005423!7.39e-08!605;UBERON:0000923!1.95e-07!604;UBERON:0005291!1.95e-07!604;UBERON:0006598!1.95e-07!604;UBERON:0002532!1.95e-07!604;UBERON:0000468!2.61e-07!659;UBERON:0000161!3.06e-07!35;UBERON:0005910!6.23e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0000365;6.06e-12;5!UBERON:0003834;2.37e-11;5!UBERON:0001533;2.37e-11;5!UBERON:0005910;4.98e-10;6!UBERON:0001044;1.13e-09;6!UBERON:0003293;1.13e-09;6!UBERON:0003294;1.13e-09;6!UBERON:0010047;1.13e-09;6!UBERON:0003408;1.13e-09;6!UBERON:0000167;1.13e-09;6!UBERON:0002365;9.05e-09;31!UBERON:0002330;9.05e-09;31!UBERON:0003513;3.06e-08;7!UBERON:0001041;5.05e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,5.66e-12,5;UBERON:0003834,2.64e-11,5;UBERON:0001533,2.64e-11,5;UBERON:0005910,4.71e-10,6;UBERON:0001044,8.31e-10,6;UBERON:0003293,8.31e-10,6;UBERON:0003294,8.31e-10,6;UBERON:0010047,8.31e-10,6;UBERON:0000167,8.31e-10,6;UBERON:0004119,2.02e-09,160;UBERON:0000925,2.02e-09,160;UBERON:0006595,2.02e-09,160;UBERON:0002365,1.12e-08,31;UBERON:0002330,1.12e-08,31;UBERON:0003513,3.30e-08,7 | |||
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| ||
|short_description=p6@COL4A6 | |short_description=p6@COL4A6 | ||
}} | }} |
Latest revision as of 23:30, 18 September 2015
Short description: | p6@COL4A6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_COL4A6_5end |
Coexpression cluster: | NA |
Association with transcript: | 43bp_to_ENST00000394872, NM_033641, uc004env.3, uc004enx.2, uc010npk.2, uc011msn.1_5end |
EntrezGene: | COL4A6 |
HGNC: | 2208 |
UniProt: | A8MXH5Q14031 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell | 1.35e-19 | 5 |
acinar cell of salivary gland | 4.15e-19 | 3 |
protein secreting cell | 2.31e-16 | 6 |
transitional epithelial cell | 7.62e-15 | 4 |
urothelial cell | 7.62e-15 | 4 |
hepatic stem cell | 1.77e-13 | 2 |
hepatic mesenchymal stem cell | 1.77e-13 | 2 |
amniotic epithelial cell | 1.45e-12 | 2 |
endo-epithelial cell | 1.89e-12 | 42 |
smooth muscle cell of the subclavian artery | 2.64e-11 | 5 |
glandular epithelial cell | 5.90e-11 | 9 |
epithelial cell of alimentary canal | 2.40e-10 | 20 |
epithelial cell | 1.59e-09 | 253 |
endodermal cell | 1.57e-08 | 58 |
respiratory epithelial cell | 1.85e-07 | 13 |
epithelial cell of esophagus | 2.37e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
urothelium | 5.66e-12 | 5 |
thoracic segment blood vessel | 2.64e-11 | 5 |
subclavian artery | 2.64e-11 | 5 |
transitional epithelium | 4.71e-10 | 6 |
saliva-secreting gland | 8.31e-10 | 6 |
gland of oral region | 8.31e-10 | 6 |
gland of foregut | 8.31e-10 | 6 |
oral gland | 8.31e-10 | 6 |
oral cavity | 8.31e-10 | 6 |
endoderm-derived structure | 2.02e-09 | 160 |
endoderm | 2.02e-09 | 160 |
presumptive endoderm | 2.02e-09 | 160 |
exocrine gland | 1.12e-08 | 31 |
exocrine system | 1.12e-08 | 31 |
trunk blood vessel | 3.30e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 6.86e-09 | 3 |
leiomyoma | 6.86e-09 | 3 |
papillary adenocarcinoma | 2.84e-07 | 1 |
benign neoplasm | 7.20e-07 | 4 |