FFCP PHASE1:Hg19::chr12:52635300..52635325,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3855 | |EntrezGene=3855 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6445 | |HGNC=6445 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000552183_5end | |association_with_transcript=0bp_to_ENST00000552183_5end | ||
|cluster_id=chr12:52635300..52635325,+ | |||
|coexpression_cluster_id=C689 | |coexpression_cluster_id=C689 | ||
|description=CAGE_peak_9_at_KRT7_5end | |description=CAGE_peak_9_at_KRT7_5end | ||
|id=chr12:52635300..52635325,+ | |id=chr12:52635300..52635325,+ | ||
|ontology_enrichment_celltype=CL:0000066!3.15e-41!254;CL:0002368!9.14e-14!13;CL:0000076!1.31e-11!62;CL:0000077!1.01e-10!19;CL:0000063!1.97e-09!578;CL:0002202!3.14e-09!9;CL:0002632!3.14e-09!9;CL:0002076!6.65e-09!43 | |ontology_enrichment_celltype=CL:0000066!3.15e-41!254;CL:0002368!9.14e-14!13;CL:0000076!1.31e-11!62;CL:0000077!1.01e-10!19;CL:0000063!1.97e-09!578;CL:0002202!3.14e-09!9;CL:0002632!3.14e-09!9;CL:0002076!6.65e-09!43 | ||
|ontology_enrichment_celltype_v019=CL:0002541;4.65e-16;3!CL:0002368;2.00e-13;13!CL:0000077;4.12e-09;19!CL:0002202;4.90e-09;9!CL:0002632;4.90e-09;9!CL:0002586;7.88e-08;3!CL:0002231;1.01e-07;3!CL:0000307;1.39e-07;3!CL:0002577;2.42e-07;3!CL:0002076;9.65e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.14e-17,253;CL:0002541,2.55e-16,3;CL:0002368,2.51e-13,13;CL:0002076,6.31e-10,42;CL:0000077,3.17e-09,19;CL:0002202,6.74e-09,9;CL:0002632,6.74e-09,9;CL:0002586,8.17e-08,3;CL:0002577,1.26e-07,3;CL:0002231,1.44e-07,3;CL:0000068,1.54e-07,3;CL:0000069,1.54e-07,3;CL:0000307,1.54e-07,3;CL:0000377,1.54e-07,3;CL:0000213,6.40e-07,58;CL:0000215,6.40e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000377;1.39e-07;3 | |||
|ontology_enrichment_disease=DOID:305!3.01e-11!106;DOID:0050687!5.44e-08!143 | |ontology_enrichment_disease=DOID:305!3.01e-11!106;DOID:0050687!5.44e-08!143 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0008947!4.52e-17!38;UBERON:0003258!4.52e-17!38;UBERON:0000065!5.13e-16!53;UBERON:0004119!2.88e-12!169;UBERON:0000925!2.88e-12!169;UBERON:0006595!2.88e-12!169;UBERON:0001004!3.29e-12!72;UBERON:0005153!3.58e-12!37;UBERON:0000072!1.43e-11!46;UBERON:0003124!5.09e-11!7;UBERON:0005631!5.46e-11!14;UBERON:0000158!5.46e-11!14;UBERON:0001048!4.46e-10!168;UBERON:0000077!7.39e-10!130;UBERON:0001737!2.74e-09!9;UBERON:0000063!2.84e-08!97;UBERON:0007196!2.94e-08!14;UBERON:0001558!2.94e-08!14;UBERON:0005178!5.44e-08!34;UBERON:0002224!5.44e-08!34;UBERON:0005157!6.36e-08!51;UBERON:0005911!6.58e-08!82;UBERON:0000915!9.22e-08!52;UBERON:0005181!1.26e-07!35;UBERON:0001041!1.50e-07!98;UBERON:0001007!1.70e-07!155;UBERON:0001555!1.70e-07!155;UBERON:0007026!1.70e-07!155;UBERON:0002048!3.92e-07!22;UBERON:0000117!3.92e-07!22;UBERON:0000171!3.92e-07!22;UBERON:0000170!3.92e-07!22;UBERON:0005597!3.92e-07!22;UBERON:0000118!3.92e-07!22;UBERON:0000464!8.82e-07!104;UBERON:0001987!8.82e-07!4;UBERON:0004340!8.82e-07!4;UBERON:0004921!9.54e-07!129;UBERON:0004185!9.54e-07!129 | |ontology_enrichment_uberon=UBERON:0008947!4.52e-17!38;UBERON:0003258!4.52e-17!38;UBERON:0000065!5.13e-16!53;UBERON:0004119!2.88e-12!169;UBERON:0000925!2.88e-12!169;UBERON:0006595!2.88e-12!169;UBERON:0001004!3.29e-12!72;UBERON:0005153!3.58e-12!37;UBERON:0000072!1.43e-11!46;UBERON:0003124!5.09e-11!7;UBERON:0005631!5.46e-11!14;UBERON:0000158!5.46e-11!14;UBERON:0001048!4.46e-10!168;UBERON:0000077!7.39e-10!130;UBERON:0001737!2.74e-09!9;UBERON:0000063!2.84e-08!97;UBERON:0007196!2.94e-08!14;UBERON:0001558!2.94e-08!14;UBERON:0005178!5.44e-08!34;UBERON:0002224!5.44e-08!34;UBERON:0005157!6.36e-08!51;UBERON:0005911!6.58e-08!82;UBERON:0000915!9.22e-08!52;UBERON:0005181!1.26e-07!35;UBERON:0001041!1.50e-07!98;UBERON:0001007!1.70e-07!155;UBERON:0001555!1.70e-07!155;UBERON:0007026!1.70e-07!155;UBERON:0002048!3.92e-07!22;UBERON:0000117!3.92e-07!22;UBERON:0000171!3.92e-07!22;UBERON:0000170!3.92e-07!22;UBERON:0005597!3.92e-07!22;UBERON:0000118!3.92e-07!22;UBERON:0000464!8.82e-07!104;UBERON:0001987!8.82e-07!4;UBERON:0004340!8.82e-07!4;UBERON:0004921!9.54e-07!129;UBERON:0004185!9.54e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0003124;4.65e-16;3!UBERON:0000920;4.65e-16;3!UBERON:0001987;2.09e-11;4!UBERON:0002394;2.09e-11;4!UBERON:0003928;2.09e-11;4!UBERON:0000065;2.87e-10;44!UBERON:0001737;1.00e-08;9!UBERON:0001557;1.00e-08;9!UBERON:0000072;6.70e-08;37!UBERON:0001781;7.88e-08;3!UBERON:0001782;7.88e-08;3!UBERON:0000478;6.89e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003124,1.33e-25,7;UBERON:0000920,2.55e-16,3;UBERON:0005631,1.65e-12,14;UBERON:0000158,1.65e-12,14;UBERON:0001987,1.07e-11,4;UBERON:0004340,1.07e-11,4;UBERON:0000065,7.61e-09,54;UBERON:0008947,8.36e-09,38;UBERON:0003258,8.36e-09,38;UBERON:0004119,1.31e-08,160;UBERON:0000925,1.31e-08,160;UBERON:0006595,1.31e-08,160;UBERON:0001737,1.51e-08,9;UBERON:0001782,8.17e-08,3;UBERON:0005424,8.17e-08,3;UBERON:0002394,1.40e-07,6;UBERON:0003928,1.40e-07,6;UBERON:0001004,3.87e-07,74;UBERON:0000478,4.91e-07,24;UBERON:0000072,7.75e-07,47 | |||
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| ||
|short_description=p9@KRT7 | |short_description=p9@KRT7 | ||
}} | }} |
Latest revision as of 22:04, 18 September 2015
Short description: | p9@KRT7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_KRT7_5end |
Coexpression cluster: | C689_Alveolar_mesothelioma_Retinal_Mesothelial_Prostate_bile_Tracheal |
Association with transcript: | 0bp_to_ENST00000552183_5end |
EntrezGene: | KRT7 |
HGNC: | 6445 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.14e-17 | 253 |
chorionic membrane mesenchymal stem cell | 2.55e-16 | 3 |
respiratory epithelial cell | 2.51e-13 | 13 |
endo-epithelial cell | 6.31e-10 | 42 |
mesothelial cell | 3.17e-09 | 19 |
epithelial cell of tracheobronchial tree | 6.74e-09 | 9 |
epithelial cell of lower respiratory tract | 6.74e-09 | 9 |
retinal pigment epithelial cell | 8.17e-08 | 3 |
placental epithelial cell | 1.26e-07 | 3 |
epithelial cell of prostate | 1.44e-07 | 3 |
duct epithelial cell | 1.54e-07 | 3 |
branched duct epithelial cell | 1.54e-07 | 3 |
tracheal epithelial cell | 1.54e-07 | 3 |
tracheoblast | 1.54e-07 | 3 |
lining cell | 6.40e-07 | 58 |
barrier cell | 6.40e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
chorion | 1.33e-25 | 7 |
egg chorion | 2.55e-16 | 3 |
extraembryonic membrane | 1.65e-12 | 14 |
membranous layer | 1.65e-12 | 14 |
placenta | 1.07e-11 | 4 |
allantois | 1.07e-11 | 4 |
respiratory tract | 7.61e-09 | 54 |
respiratory primordium | 8.36e-09 | 38 |
endoderm of foregut | 8.36e-09 | 38 |
endoderm-derived structure | 1.31e-08 | 160 |
endoderm | 1.31e-08 | 160 |
presumptive endoderm | 1.31e-08 | 160 |
larynx | 1.51e-08 | 9 |
pigmented layer of retina | 8.17e-08 | 3 |
presumptive retinal pigmented epithelium | 8.17e-08 | 3 |
bile duct | 1.40e-07 | 6 |
digestive system duct | 1.40e-07 | 6 |
respiratory system | 3.87e-07 | 74 |
extraembryonic structure | 4.91e-07 | 24 |
segment of respiratory tract | 7.75e-07 | 47 |