FFCP PHASE1:Hg19::chr5:78908233..78908316,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=167153 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26776 | |||
|TSSclassifier=strong | |||
|UniProt=Q6PIY7,D6RAF2 | |||
|association_with_transcript=0bp_to_ENST00000423041,ENST00000428308,ENST00000453514,ENST00000504233,NM_001114393,NM_001114394,NM_173797,uc003kfz.2,uc003kga.2,uc003kgb.2,uc010jae.1,uc010jaf.1_5end | |||
|cluster_id=chr5:78908233..78908316,+ | |||
|description=CAGE_peak_1_at_PAPD4_5end | |||
|id=chr5:78908233..78908316,+ | |||
|ontology_enrichment_celltype=CL:0000738!2.58e-31!140;CL:0000766!3.57e-30!76;CL:0002031!1.46e-28!124;CL:0000839!3.94e-27!70;CL:0002087!5.25e-26!119;CL:0000557!5.98e-26!71;CL:0002009!1.07e-24!65;CL:0002194!2.99e-24!63;CL:0000576!2.99e-24!63;CL:0000040!2.99e-24!63;CL:0000559!2.99e-24!63;CL:0002057!1.16e-23!42;CL:0000037!6.93e-23!172;CL:0000566!6.93e-23!172;CL:0002032!1.25e-22!165;CL:0000837!1.25e-22!165;CL:0000860!9.94e-21!45;CL:0000763!2.48e-19!112;CL:0000049!2.48e-19!112;CL:0000988!4.06e-19!182;CL:0000791!2.92e-07!18;CL:0000789!2.92e-07!18;CL:0002420!2.92e-07!18;CL:0002419!2.92e-07!18;CL:0000790!2.92e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.64e-19;33!CL:0002057;8.64e-19;33!CL:0000473;1.89e-17;39!CL:0000234;1.89e-17;39!CL:0000576;6.72e-17;48!CL:0000766;8.79e-15;69!CL:0002087;4.42e-09;104!CL:0000738;1.61e-07;136!CL:0000791;2.86e-07;18!CL:0000789;2.86e-07;18!CL:0002419;2.86e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,3.24e-33,136;CL:0000766,3.75e-33,72;CL:0002031,1.65e-30,120;CL:0000839,4.61e-30,66;CL:0000557,9.48e-29,67;CL:0002087,6.96e-28,115;CL:0002009,1.37e-27,61;CL:0002194,3.55e-27,59;CL:0000576,3.55e-27,59;CL:0000040,3.55e-27,59;CL:0000559,3.55e-27,59;CL:0000473,1.51e-25,48;CL:0000234,1.51e-25,48;CL:0000037,3.36e-24,168;CL:0002032,5.67e-24,161;CL:0000837,5.67e-24,161;CL:0000860,1.16e-23,42;CL:0002057,1.16e-23,42;CL:0000763,6.49e-21,108;CL:0000049,6.49e-21,108;CL:0000988,8.40e-21,177;CL:0000791,2.92e-07,18;CL:0000789,2.92e-07,18;CL:0002420,2.92e-07,18;CL:0002419,2.92e-07,18;CL:0000790,2.92e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002057;2.82e-17;42!CL:0000790;2.86e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.21e-27!102;UBERON:0003061!3.21e-27!102;UBERON:0007023!2.74e-25!115;UBERON:0002193!2.15e-22!112;UBERON:0002371!7.40e-21!80;UBERON:0001474!3.64e-18!86;UBERON:0004765!1.20e-14!101;UBERON:0001434!1.20e-14!101;UBERON:0002405!3.07e-12!115;UBERON:0001049!1.46e-08!57;UBERON:0005068!1.46e-08!57;UBERON:0006241!1.46e-08!57;UBERON:0007135!1.46e-08!57;UBERON:0003080!2.92e-07!42;UBERON:0002780!5.19e-07!41;UBERON:0001890!5.19e-07!41;UBERON:0006240!5.19e-07!41;UBERON:0000178!9.17e-07!15;UBERON:0000179!9.17e-07!15;UBERON:0000463!9.17e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.17e-07;114!UBERON:0000178;9.06e-07;15!UBERON:0000179;9.06e-07;15!UBERON:0000463;9.06e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.11e-29,98;UBERON:0003061,2.11e-29,98;UBERON:0007023,3.53e-25,114;UBERON:0002193,3.72e-24,108;UBERON:0002371,5.18e-23,76;UBERON:0001474,5.29e-20,82;UBERON:0002405,1.13e-18,93;UBERON:0004765,1.28e-16,90;UBERON:0001434,2.50e-15,100;UBERON:0001049,2.58e-08,56;UBERON:0005068,2.58e-08,56;UBERON:0006241,2.58e-08,56;UBERON:0007135,2.58e-08,56;UBERON:0000073,3.05e-07,53;UBERON:0002616,3.05e-07,53;UBERON:0002780,5.19e-07,41;UBERON:0001890,5.19e-07,41;UBERON:0003080,5.19e-07,41;UBERON:0006240,5.19e-07,41;UBERON:0000178,9.17e-07,15;UBERON:0000179,9.17e-07,15;UBERON:0000463,9.17e-07,15 | |||
|phase1_expression=29.2502190625596,28.6894702013917,25.6537015454667,30.0219895059391,23.6889380046463,20.0637860543085,7.59899634504932,10.7392378482561,22.2007783969863,7.61775203154677,9.07141518364156,12.2327168392896,9.75937819445278,23.3918407094488,26.5117900582333,28.2376561509746,22.2996975368871,29.2124036154949,20.4931775492013,11.8196215753716,10.8120366359454,7.52291331547411,22.6126429833535,17.2461775591834,20.8400781727373,45.0839093912912,38.0946735047748,39.1979690942123,42.0899776228327,59.493556705068,63.9390589295394,22.9855306119732,10.843413076017,24.403764671008,13.9440961044543,15.6386155736164,17.322425920756,55.3995408531877,70.9927344044302,54.4697285496788,69.1898815401366,80.001735506688,88.8635708337944,66.4469951222611,72.5521811882514,65.4976965207104,79.7231596586498,74.8325556199723,90.4342603013702,103.569261235974,103.488925437757,74.4919024149043,81.7047263345786,86.4949476002327,81.2558919566051,73.790997100701,69.3181621146928,57.5292120179417,66.4202046444859,77.6648245524147,76.7204550958849,95.9867283543344,85.7693727773017,87.3760738592023,92.5767471225183,95.3207177481115,97.7830930923053,106.780682734116,92.8239594787958,96.866224738482,60.5399502633369,85.8086891851026,83.8625326718344,46.4761629886272,59.7418082901772,41.5124118106584,63.6903338600627,62.9241181005911,65.4153137857116,56.4325232607672,72.803503854867,61.375155664917,28.1593991138116,37.6835641770871,36.4698794084057,34.9918782504536,47.2467264702495,25.8638597979517,37.6795577487371,40.0702576904853,63.7518525402582,66.945039588287,66.5155416937898,21.1474125726441,39.7961079716891,22.1242631211065,82.6181034478099,66.4188189046088,62.0916526978518,43.4684888015763,67.4659091931532,64.3889015799237,77.9306913631645,33.6459579793224,59.804999217392,54.2758041729872,57.9520268457133,35.097021604835,34.7258457984875,47.193678621255,45.0450528990933,51.0053430893692,69.2498249966822,79.4596259426448,57.4945380927372,42.1510754834946,55.5669715722786,48.1078423675682,60.2186867006417,50.9704662918555,41.0182575929544,52.2748624446606,54.5081931061537,61.3055867429664,46.224368824368,51.8542181976397,39.4141438522102,77.0137759118478,71.9414126657635,54.3091514560496,70.7039912310489,16.0968206328873,19.4351094002166,34.3367194765338,22.0588680679791,32.1559272093029,16.7010048880731,27.7381876072502,26.469748805939,21.5077515538687,18.6209745669427,43.0266263009986,8.74308691902101,14.0898088258083,44.1384455370369,57.985202520656,47.2000759841971,30.5267999110838,28.0277506282263,28.6022276023765,11.3294572199022,12.9035189265919,10.0670745466202,5.6530794192401,7.55098985177831,18.4329088099845,11.4947231595246,16.0218390684984,19.2113781850824,25.7734871828796,14.0990260988201,15.9657142200888,8.7862340717341,15.4418493745265,8.1014194788176,15.4488529931458,9.87929239555147,11.5989824897822,7.66583187329416,8.54339093611316,8.79368370865955,57.9833836718678,54.2892369807656,7.84969293856562,37.7698683288442,20.5141428896619,42.37093786023,59.0883438742556,23.4081132250916,11.7742296029885,14.9448594021587,10.1133694851036,33.9220028585745,25.1908956770317,24.0288997576784,16.9520318962323,20.74233328128,9.37285727335187,23.412005762274,10.8389646093445,21.9689560411148,28.1842796745036,30.5939864855769,30.1969234409834,32.8688215720378,26.6550468566536,40.1937288773728,32.0760771466154,24.9739598571342,13.6524204290704,10.0606539854273,27.4387865745128,36.0341337231257,45.9926431703744,31.6063887034203,23.5995602765245,24.4888036017753,12.0238114149622,74.9848677179443,35.2369691550636,31.3659213716152,46.214028796998,42.2515369877599,72.6546322928674,33.8732678523493,62.784795593751,40.6312311522198,69.1668541428874,42.3429533754577,51.8883842388386,62.4816882829241,35.3639864779017,18.8212257464641,20.4856504353095,22.0924357678576,22.9443676311203,18.7839507439577,18.024048491722,15.918570173124,21.9761436632585,10.3451548859008,13.8691396448815,25.0319251727706,26.3728784659083,13.8134921352481,36.2206983864944,25.2657818584355,15.2615772051399,14.8354527268729,12.2915625240576,14.3382164552112,11.9833694250823,14.9480490039991,14.5617812812978,13.7355025587742,11.5424147083917,11.8104872739944,7.01208869017229,8.231480226628,5.88034845542168,44.3642621876408,45.2100519671708,52.580301694645,21.1902287719032,30.9930865128646,19.2155947534349,23.0475599358114,5.62008766288098,21.9153159857355,38.3316162956312,11.077482380551,11.4392826380754,18.7630744632855,28.634810028844,29.7043996416629,14.1479118805852,13.8895653772983,14.6495697220641,18.1747011530633,12.8772924314231,71.4029317653452,49.8429084746576,47.561971932393,12.185398418281,20.9977660248574,19.7067385166917,33.7635630589738,25.8664205277426,9.58456697913028,53.7002929306578,44.8166529127321,58.6738566980385,88.3455314445974,65.6460653817176,26.288128236958,20.627374980147,19.926966025708,8.55362230113526,22.3135659166212,22.2253862804499,38.3007419724975,16.0347450613866,9.15516144549888,15.7677314515043,35.5497218333889,32.1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| |||
|short_description=p1@PAPD4 | |||
}} |
Latest revision as of 21:32, 18 September 2015
Short description: | p1@PAPD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PAPD4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000423041, ENST00000428308, ENST00000453514, ENST00000504233, NM_001114393, NM_001114394, NM_173797, uc003kfz.2, uc003kga.2, uc003kgb.2, uc010jae.1, uc010jaf.1_5end |
EntrezGene: | PAPD4 |
HGNC: | 26776 |
UniProt: | Q6PIY7D6RAF2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 3.24e-33 | 136 |
myeloid leukocyte | 3.75e-33 | 72 |
hematopoietic lineage restricted progenitor cell | 1.65e-30 | 120 |
myeloid lineage restricted progenitor cell | 4.61e-30 | 66 |
granulocyte monocyte progenitor cell | 9.48e-29 | 67 |
nongranular leukocyte | 6.96e-28 | 115 |
macrophage dendritic cell progenitor | 1.37e-27 | 61 |
monopoietic cell | 3.55e-27 | 59 |
monocyte | 3.55e-27 | 59 |
monoblast | 3.55e-27 | 59 |
promonocyte | 3.55e-27 | 59 |
defensive cell | 1.51e-25 | 48 |
phagocyte | 1.51e-25 | 48 |
hematopoietic stem cell | 3.36e-24 | 168 |
hematopoietic oligopotent progenitor cell | 5.67e-24 | 161 |
hematopoietic multipotent progenitor cell | 5.67e-24 | 161 |
classical monocyte | 1.16e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.16e-23 | 42 |
myeloid cell | 6.49e-21 | 108 |
common myeloid progenitor | 6.49e-21 | 108 |
hematopoietic cell | 8.40e-21 | 177 |
mature alpha-beta T cell | 2.92e-07 | 18 |
alpha-beta T cell | 2.92e-07 | 18 |
immature T cell | 2.92e-07 | 18 |
mature T cell | 2.92e-07 | 18 |
immature alpha-beta T cell | 2.92e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.11e-29 | 98 |
blood island | 2.11e-29 | 98 |
adult organism | 3.53e-25 | 114 |
hemolymphoid system | 3.72e-24 | 108 |
bone marrow | 5.18e-23 | 76 |
bone element | 5.29e-20 | 82 |
immune system | 1.13e-18 | 93 |
skeletal element | 1.28e-16 | 90 |
skeletal system | 2.50e-15 | 100 |
neural tube | 2.58e-08 | 56 |
neural rod | 2.58e-08 | 56 |
future spinal cord | 2.58e-08 | 56 |
neural keel | 2.58e-08 | 56 |
regional part of nervous system | 3.05e-07 | 53 |
regional part of brain | 3.05e-07 | 53 |
regional part of forebrain | 5.19e-07 | 41 |
forebrain | 5.19e-07 | 41 |
anterior neural tube | 5.19e-07 | 41 |
future forebrain | 5.19e-07 | 41 |
blood | 9.17e-07 | 15 |
haemolymphatic fluid | 9.17e-07 | 15 |
organism substance | 9.17e-07 | 15 |