FFCP PHASE1:Hg19::chr12:52448420..52448460,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr12:52448420..52448460,+
|short_description=p5@NR4A1
|description=CAGE_peak_5_at_NR4A1_5end
|association_with_transcript=307bp_to_AB307717,AB464647,AB590255,B...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3164 | |EntrezGene=3164 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=7980 | |HGNC=7980 | ||
|TSSclassifier=strong | |||
|UniProt=Q53Y00,Q6IBU8 | |UniProt=Q53Y00,Q6IBU8 | ||
|association_with_transcript=307bp_to_AB307717,AB464647,AB590255,BT007144,CR456704,CU677577,DQ891134,DQ894313,HQ692855_5end | |||
|cluster_id=chr12:52448420..52448460,+ | |||
|coexpression_cluster_id=C1018 | |||
|description=CAGE_peak_5_at_NR4A1_5end | |||
|id=chr12:52448420..52448460,+ | |||
|ontology_enrichment_celltype=CL:0000860!7.92e-21!45;CL:0002057!1.71e-20!42;CL:0000557!4.12e-14!71;CL:0000766!8.90e-13!76;CL:0000839!1.10e-12!70;CL:0002009!4.92e-12!65;CL:0002194!4.32e-11!63;CL:0000576!4.32e-11!63;CL:0000040!4.32e-11!63;CL:0000559!4.32e-11!63;CL:0000738!9.11e-09!140;CL:0002031!1.64e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.31e-21;33!CL:0002057;1.31e-21;33!CL:0000473;1.36e-14;39!CL:0000234;1.36e-14;39!CL:0000576;1.47e-11;48!CL:0000766;2.65e-10;69!CL:0000097;4.53e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.07e-22,42;CL:0002057,3.07e-22,42;CL:0000473,1.81e-18,48;CL:0000234,1.81e-18,48;CL:0000766,7.04e-18,72;CL:0000557,1.48e-17,67;CL:0000839,1.99e-16,66;CL:0002009,5.68e-14,61;CL:0002194,2.93e-13,59;CL:0000576,2.93e-13,59;CL:0000040,2.93e-13,59;CL:0000559,2.93e-13,59;CL:0000763,7.51e-10,108;CL:0000049,7.51e-10,108;CL:0000738,2.25e-08,136;CL:0000097,4.49e-07,5;CL:0002028,4.49e-07,5;CL:0002031,8.68e-07,120 | |||
|ontology_enrichment_development_v019=CL:0002057;7.39e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!7.29e-12!80;UBERON:0002390!3.35e-11!102;UBERON:0003061!3.35e-11!102;UBERON:0001474!4.47e-11!86;UBERON:0004765!3.77e-10!101;UBERON:0001434!3.77e-10!101;UBERON:0007023!1.03e-09!115;UBERON:0002193!2.37e-09!112;UBERON:0002405!9.59e-09!115;UBERON:0000062!1.20e-08!511 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.32e-15,76;UBERON:0001474,4.72e-15,82;UBERON:0002390,1.08e-13,98;UBERON:0003061,1.08e-13,98;UBERON:0004765,6.69e-13,90;UBERON:0001434,1.20e-12,100;UBERON:0002193,1.56e-11,108;UBERON:0002405,3.77e-11,93;UBERON:0007023,8.00e-10,114;UBERON:0002204,3.36e-08,167;UBERON:0000923,4.54e-08,560;UBERON:0010316,4.54e-08,560;UBERON:0005291,4.54e-08,560;UBERON:0006598,4.54e-08,560;UBERON:0010317,4.54e-08,560;UBERON:0002532,4.54e-08,560;UBERON:0002050,7.61e-08,564;UBERON:0003081,1.99e-07,203;UBERON:0000926,4.40e-07,315;UBERON:0004120,4.40e-07,315;UBERON:0006603,4.40e-07,315;UBERON:0005423,6.25e-07,581 | |||
|phase1_expression=1.45342703416445,0,0.845726424575827,0,0.446961094427288,0,0,0,0,0,0,0,0,0.495065411840187,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0,1.18009283054671,0,1.39334510984468,0,0,0,0,0.142169232487422,0.293600439334847,0.553995408531877,1.00272223735071,0.434021741431704,0,0,0,0,0.755751887377619,0.970336244751265,4.18372266430232,4.11167888021826,3.40677007984614,2.01384674625505,1.7931249457037,1.18241114944293,5.86067657252252,6.45484683583826,5.41705946377367,4.70605848856512,3.82068610080984,3.59557575112135,12.2433556948361,10.269728866435,12.1474053901818,0,0.398927315243264,1.27867425159808,1.45104619314292,2.26954089876456,0.622822248995575,2.26123798731069,2.60741459210101,0.868755378820466,1.21079900526674,1.10483290796269,0.949387162322653,0.845021145247767,3.4016687994407,0.209658645508376,0.44931452458598,1.35159203557356,0,0.285012743741249,2.18808344918999,0.547992461293902,0,0,0,0.426730222566507,0,0,0,0,0.569212969109448,0.587237189370939,1.14681968437569,0,1.68152568894461,0.263384084775077,0,0,0.411202997999018,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0.434473211648397,0,0,0,0,0,4.49024208778554,0,0,0,0,0.175669571386252,1.0478326039817,0,0,0,0,0,0.715471872916026,1.14398982156026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0.206651562351531,1.18800285728205,0.741800787835671,0,0,0,0,0,0,0.612975591598039,2.10333282469236,0,0,0,0,0,0,0.515281080091258,0,0,0,0,0,0,0.355009592516614,0,0,0,0,0,0.243947412259191,0,0.232387885739037,0.207322110030741,0,0,0,0,0,0,0,0.354920400119532,0.168584690078102,0,0.110293972732394,0.871517776369625,0.237270619111097,0.674156540800822,0.588664395376038,3.07797725557112,0,0,0,0,0,0,4.13552934676983,0,0.491953754172454,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46331618947972,0.176096868026452,34.8311234108497,24.3562721274665,29.4144869883465,0.126995788584338,1.14596527667483,0,0,0.514137463516618,0.901029173531752,0.285826432630578,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0,0.197030760201927,0.431255149719035,0.513372145118994,0,0,0,0,0,1.49801404789436,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0.921845842708516,0,0,0,0.620304078368662,1.2942852049117,1.70764092485511,0,0,0.30239029332968,0,0,0.280660094433074,0.384417447767103,0,0.160853921143607,0,0,0,0,0,0.232420756919918,0.604297247958111,0,0,0,0,0.262248829918848,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0.328014645699706,0,1.23649213977267,0,0,0,0,0,0.096670718292122,0,0.15350367472613,0,0,0,0,0,0,0,0.127612712494584,0.10115778085555,0,0.94443704049192,0,0,0,0,0.37064843820784,0,0,0,0,0,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0,3.16950440270266,0,0.282810863907425,0,0,0.66343897524122,0.438450885253763,0,1.31178950409327,0,0,0,0,0,0,0,6.54433669422759,0.329294892959902,0,0,0,0,0,0.753150406214233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0.213425530045242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,1.31857361344705,0,0,0,0.95497793895076,0,2.15012491469462,0,0,0.222617410045812,0,0,3.78571177677032,4.14425873296722,0,0.306806047506464,0.369254416383208,0,0.0898683511473268,0.179021174675609,0,3.94573622547734,0,0,1.93866549219044,0.0927680981618513,0,0.520855522170466,0.0874599999961957,0.724999575434793,0,0.254253650292766,0.709163045303809,0,0,0,0,0.120596438625408,0,0,0.295547618953547,3.29078095730959,0.980446171670911,4.0432885840795,2.15460723810632,0.341826167541004,0,0.269272933229316,0.217294743844016,0.31900115973192,0.183195186803725,1.06606955203727,0,0,0,0,0,0,0,0,0.210998064528027,0.326465616318295,0.282706142867882,0,0,1.76915129006678,0.611030144933625,1.48260564340311,1.72989514525104,0.313265848516366,0.269604531922708,4.01288823649394,0.234264445725339,0.182454789215666,0.978323094660449,0,0.394584402849391,1.20990716048664,0,0.126373159256976,0.150323419414493,0,0,0,0.313932918407225,0,0,0.138674673013139,0.520679215005393,0.881931576729399,0,4.01871336956669,0.171986032471617,0.387025325156341,0.146178634172371,0.246346371159628,2.5217144286989,0.176512253383001,0.90392296312213,0,0,0,1.17330829640882,0.0801588202515337,6.61704283691993,0.39961921916426,0,0.114536596165916,0.857974989309823,0.288109595976299,0.745515213392595,1.64985824231757,0,0,0,0.288950589901519,0,0,0,0.429765441419957,0.525774708558629,5.30636562417283,0.916641696046735,0.717873024576814,0.199679000498991,1.71690419254628,0.669514372325618,1.5452198671947,0,0,0.157566364614447,0.164831716762333,0.0674035438541849,0.0984274815147488,0,0,0.136203406111576,0.160753148465019,0,0.83088067605837,0.674921674654501,10.8332273638113,0.0607495566580247,0,0.0788057072991982,0.524545881349981,0.844802692155252,3.76503412598974,0,0,0,0,0,0,0,0,0,0.340776043570843,0,1.318970103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| ||
|short_description=p5@NR4A1 | |||
}} | }} |
Latest revision as of 21:17, 18 September 2015
Short description: | p5@NR4A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_NR4A1_5end |
Coexpression cluster: | C1018_immature_CD14_Mast_cervical_seminal_heart_ovary |
Association with transcript: | 307bp_to_AB307717, AB464647, AB590255, BT007144, CR456704, CU677577, DQ891134, DQ894313, HQ692855_5end |
EntrezGene: | NR4A1 |
HGNC: | 7980 |
UniProt: | Q53Y00Q6IBU8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.07e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.07e-22 | 42 |
defensive cell | 1.81e-18 | 48 |
phagocyte | 1.81e-18 | 48 |
myeloid leukocyte | 7.04e-18 | 72 |
granulocyte monocyte progenitor cell | 1.48e-17 | 67 |
myeloid lineage restricted progenitor cell | 1.99e-16 | 66 |
macrophage dendritic cell progenitor | 5.68e-14 | 61 |
monopoietic cell | 2.93e-13 | 59 |
monocyte | 2.93e-13 | 59 |
monoblast | 2.93e-13 | 59 |
promonocyte | 2.93e-13 | 59 |
myeloid cell | 7.51e-10 | 108 |
common myeloid progenitor | 7.51e-10 | 108 |
leukocyte | 2.25e-08 | 136 |
mast cell | 4.49e-07 | 5 |
basophil mast progenitor cell | 4.49e-07 | 5 |
hematopoietic lineage restricted progenitor cell | 8.68e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.32e-15 | 76 |
bone element | 4.72e-15 | 82 |
hematopoietic system | 1.08e-13 | 98 |
blood island | 1.08e-13 | 98 |
skeletal element | 6.69e-13 | 90 |
skeletal system | 1.20e-12 | 100 |
hemolymphoid system | 1.56e-11 | 108 |
immune system | 3.77e-11 | 93 |
adult organism | 8.00e-10 | 114 |
musculoskeletal system | 3.36e-08 | 167 |
germ layer | 4.54e-08 | 560 |
germ layer / neural crest | 4.54e-08 | 560 |
embryonic tissue | 4.54e-08 | 560 |
presumptive structure | 4.54e-08 | 560 |
germ layer / neural crest derived structure | 4.54e-08 | 560 |
epiblast (generic) | 4.54e-08 | 560 |
embryonic structure | 7.61e-08 | 564 |
lateral plate mesoderm | 1.99e-07 | 203 |
mesoderm | 4.40e-07 | 315 |
mesoderm-derived structure | 4.40e-07 | 315 |
presumptive mesoderm | 4.40e-07 | 315 |
developing anatomical structure | 6.25e-07 | 581 |