FFCP PHASE1:Hg19::chr14:106330824..106330846,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=5536 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000463911,uc001yrt.2_5end | |||
|cluster_id=chr14:106330824..106330846,- | |||
|coexpression_cluster_id=C218 | |||
|description=CAGE_peak_1_at_IGHJ3_5end | |||
|id=chr14:106330824..106330846,- | |||
|ontology_enrichment_celltype=CL:0000236!6.53e-23!14;CL:0000945!6.83e-21!24;CL:0000826!6.83e-21!24;CL:0000838!3.01e-09!52;CL:0000542!5.17e-09!53;CL:0000051!5.17e-09!53 | |||
|ontology_enrichment_celltype_v019=CL:0000236;2.01e-41;13!CL:0000945;6.77e-27;24!CL:0000542;4.71e-09;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,1.89e-38,14;CL:0000945,5.67e-27,24;CL:0000826,5.67e-27,24;CL:0000838,1.62e-11,52;CL:0000542,2.87e-11,53;CL:0000051,2.87e-11,53 | |||
|ontology_enrichment_development_v019=UBERON:0004872;4.01e-09;7!CL:0000051;4.71e-09;53!UBERON:0001045;2.27e-08;1!UBERON:0006298;3.83e-08;1!UBERON:0008801;8.12e-08;1!UBERON:0006242;8.12e-08;1!UBERON:0005754;8.12e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:630;3.83e-08;1!DOID:0050177;3.83e-08;1!DOID:0050427;3.83e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:630,3.34e-08,1;DOID:0050177,3.34e-08,1;DOID:0050427,3.34e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.82e-21!115;UBERON:0001829!1.17e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001829;2.89e-14;2!UBERON:0002106;1.33e-09;3!UBERON:0000029;1.65e-08;1!UBERON:0001154;2.27e-08;1!UBERON:0001153;2.27e-08;1!UBERON:0009854;2.27e-08;1!UBERON:0002372;3.83e-08;1!UBERON:0001736;3.83e-08;1!UBERON:0002171;3.83e-08;1!UBERON:0001961;3.83e-08;1!UBERON:0001744;3.83e-08;1!UBERON:0006518;3.83e-08;1!UBERON:0008949;3.83e-08;1!UBERON:0000101;3.83e-08;1!UBERON:0001042;3.83e-08;1!UBERON:0002167;3.83e-08;1!UBERON:0001735;3.83e-08;1!UBERON:0001831;8.12e-08;1!UBERON:0000998;8.12e-08;1!UBERON:0006868;8.12e-08;1!UBERON:0001567;8.12e-08;1!UBERON:0004921;8.31e-08;33!UBERON:0001155;3.39e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001829,4.32e-14,2;UBERON:0007023,1.97e-13,114;UBERON:0002106,1.28e-09,3;UBERON:0004854,1.28e-09,3;UBERON:0009034,1.28e-09,3;UBERON:0002095,1.28e-09,3;UBERON:0004782,1.28e-09,3;UBERON:0003281,1.28e-09,3;UBERON:0009664,1.28e-09,3;UBERON:0002296,1.28e-09,3;UBERON:0005602,1.28e-09,3;UBERON:0001179,1.28e-09,3;UBERON:0006293,1.28e-09,3;UBERON:0005409,1.28e-08,25;UBERON:0000029,1.65e-08,1;UBERON:0001154,2.52e-08,1;UBERON:0001153,2.52e-08,1;UBERON:0001045,2.52e-08,1;UBERON:0002171,3.83e-08,1;UBERON:0006518,3.83e-08,1;UBERON:0008949,3.83e-08,1;UBERON:0000101,3.83e-08,1;UBERON:0002167,3.83e-08,1;UBERON:0002372,4.11e-08,1;UBERON:0001961,4.11e-08,1;UBERON:0001744,4.11e-08,1;UBERON:0001735,4.11e-08,1;UBERON:0001736,4.71e-08,1;UBERON:0006298,4.71e-08,1;UBERON:0000998,7.59e-08,1;UBERON:0006868,7.59e-08,1;UBERON:0001831,9.94e-08,1;UBERON:0001567,9.94e-08,1;UBERON:0008801,9.94e-08,1;UBERON:0001155,2.82e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0.142169232487422,0.880801318004542,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.27683166757279,0.889509253863555,2.56038133539904,4.00395987036012,2.29900975981793,3.96626923670917,2.86216126360609,2.27685187643779,2.93618594685469,3.05818582500183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0.476981248610684,1.14398982156026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13929437434833,0.476463550915578,0,0,0,0,0,0,0,0,0,0,0,0.59873811429845,0.5745161103971,0.423347165447766,0,0,0.228234679033192,0,0,0.677167111206413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,3.03912307084262,0,0,0,0,0,0,0,0.789147245095469,0,0,0,0,0,0,0,0,0,0,0,0.689486746482929,0,0,0,0,0,0,0,0,0,0,0.538651809526579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,1.76915129006678,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775912131907355,0,0,0,0,0,0,0,1.28071796843612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236417121897595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.533937062838473,0,2.48543433208317,6.45015828355536,0,0.730755590285376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,0,1.09651553371436,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0.860454717640555,0,0,1.27016115057279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00326405540328,0.218559560503957,0,0,0,0,0,0,0,1.87967835959707,1.09578409555081,0,0,0,0,0,2.2936464170227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378893491091197,0.267964130156178,0,0,1.27940389140589,0,0.0645889098360061,0,0,0,0,1.08858373948481,0,2.42467390852515,3.29922144806311,0,0,0,0,0,0,0,0,0,3.01910690386539,2.56454793842586 | |||
|short_description=p1@IGHJ3 | |||
}} |
Latest revision as of 21:13, 18 September 2015
Short description: | p1@IGHJ3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_IGHJ3_5end |
Coexpression cluster: | C218_tonsil_lymph_CD19_spleen_colon_appendix_salivary |
Association with transcript: | 0bp_to_ENST00000463911, uc001yrt.2_5end |
EntrezGene: | NA |
HGNC: | 5536 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 1.89e-38 | 14 |
lymphocyte of B lineage | 5.67e-27 | 24 |
pro-B cell | 5.67e-27 | 24 |
lymphoid lineage restricted progenitor cell | 1.62e-11 | 52 |
lymphocyte | 2.87e-11 | 53 |
common lymphoid progenitor | 2.87e-11 | 53 |
Ontology term | p-value | n |
---|---|---|
major salivary gland | 4.32e-14 | 2 |
adult organism | 1.97e-13 | 114 |
spleen | 1.28e-09 | 3 |
gastrointestinal system mesentery | 1.28e-09 | 3 |
stomach region | 1.28e-09 | 3 |
mesentery | 1.28e-09 | 3 |
gastrointestinal system serosa | 1.28e-09 | 3 |
mesentery of stomach | 1.28e-09 | 3 |
gut mesentery | 1.28e-09 | 3 |
dorsal mesentery | 1.28e-09 | 3 |
dorsal mesogastrium | 1.28e-09 | 3 |
peritoneal cavity | 1.28e-09 | 3 |
spleen primordium | 1.28e-09 | 3 |
gastrointestinal system | 1.28e-08 | 25 |
lymph node | 1.65e-08 | 1 |
vermiform appendix | 2.52e-08 | 1 |
caecum | 2.52e-08 | 1 |
midgut | 2.52e-08 | 1 |
lower lobe of right lung | 3.83e-08 | 1 |
right lung lobe | 3.83e-08 | 1 |
lower lobe of lung | 3.83e-08 | 1 |
lobe of lung | 3.83e-08 | 1 |
right lung | 3.83e-08 | 1 |
tonsil | 4.11e-08 | 1 |
mucosa-associated lymphoid tissue | 4.11e-08 | 1 |
lymphoid tissue | 4.11e-08 | 1 |
tonsillar ring | 4.11e-08 | 1 |
submandibular gland | 4.71e-08 | 1 |
submandibular gland primordium | 4.71e-08 | 1 |
seminal vesicle | 7.59e-08 | 1 |
seminal fluid secreting gland | 7.59e-08 | 1 |
parotid gland | 9.94e-08 | 1 |
cheek | 9.94e-08 | 1 |
parotid gland primordium | 9.94e-08 | 1 |
colon | 2.82e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 3.34e-08 | 1 |
monogenic disease | 3.34e-08 | 1 |
xeroderma pigmentosum | 3.34e-08 | 1 |