FFCP PHASE1:Hg19::chr14:106330406..106330426,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt=P01857 | |UniProt=P01857 | ||
|association_with_transcript=43bp_to_uc001yrs.2,uc001yrx.1,uc001yrz.1,uc001yse.2,uc001ysm.1_5end | |association_with_transcript=43bp_to_uc001yrs.2,uc001yrx.1,uc001yrz.1,uc001yse.2,uc001ysm.1_5end | ||
|cluster_id=chr14:106330406..106330426,- | |||
|coexpression_cluster_id=C282 | |||
|description=CAGE_peak_1_at_uc001yrs.2_5end,CAGE_peak_1_at_uc001yrx.1_5end,CAGE_peak_1_at_uc001yrz.1_5end,CAGE_peak_1_at_uc001yse.2_5end,CAGE_peak_1_at_uc001ysm.1_5end | |description=CAGE_peak_1_at_uc001yrs.2_5end,CAGE_peak_1_at_uc001yrx.1_5end,CAGE_peak_1_at_uc001yrz.1_5end,CAGE_peak_1_at_uc001yse.2_5end,CAGE_peak_1_at_uc001ysm.1_5end | ||
|id=chr14:106330406..106330426,- | |id=chr14:106330406..106330426,- | ||
|ontology_enrichment_celltype=CL:0000945!7.19e-55!24;CL:0000826!7.19e-55!24;CL:0000236!5.01e-42!14;CL:0000542!1.72e-24!53;CL:0000051!1.72e-24!53;CL:0000838!2.05e-22!52;CL:0002087!3.87e-13!119;CL:0000738!2.99e-11!140;CL:0000037!1.28e-09!172;CL:0000566!1.28e-09!172;CL:0002031!4.23e-09!124;CL:0000988!1.01e-08!182;CL:0000785!4.62e-08!2;CL:0000955!4.62e-08!2;CL:0000818!4.62e-08!2;CL:0000954!4.62e-08!2;CL:0000816!4.62e-08!2;CL:0002032!9.30e-08!165;CL:0000837!9.30e-08!165 | |ontology_enrichment_celltype=CL:0000945!7.19e-55!24;CL:0000826!7.19e-55!24;CL:0000236!5.01e-42!14;CL:0000542!1.72e-24!53;CL:0000051!1.72e-24!53;CL:0000838!2.05e-22!52;CL:0002087!3.87e-13!119;CL:0000738!2.99e-11!140;CL:0000037!1.28e-09!172;CL:0000566!1.28e-09!172;CL:0002031!4.23e-09!124;CL:0000988!1.01e-08!182;CL:0000785!4.62e-08!2;CL:0000955!4.62e-08!2;CL:0000818!4.62e-08!2;CL:0000954!4.62e-08!2;CL:0000816!4.62e-08!2;CL:0002032!9.30e-08!165;CL:0000837!9.30e-08!165 | ||
|ontology_enrichment_celltype_v019=CL:0000236;2.20e-87;13!CL:0000945;8.31e-73;24!CL:0000542;1.94e-24;53!CL:0000946;4.68e-09;1!CL:0000785;4.68e-09;1!CL:0000819;4.68e-09;1!CL:0000786;4.68e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,1.03e-94,14;CL:0000945,8.98e-73,24;CL:0000826,8.98e-73,24;CL:0000542,3.50e-36,53;CL:0000051,3.50e-36,53;CL:0000838,3.35e-32,52;CL:0000785,2.52e-16,2;CL:0000955,2.52e-16,2;CL:0000818,2.52e-16,2;CL:0000954,2.52e-16,2;CL:0000816,2.52e-16,2;CL:0002087,5.63e-15,115;CL:0002031,2.65e-12,120;CL:0000738,3.11e-12,136;CL:0000817,3.34e-11,3;CL:0002032,6.79e-10,161;CL:0000837,6.79e-10,161;CL:0000037,2.31e-09,168;CL:0000946,4.50e-09,1;CL:0000786,4.50e-09,1;CL:0000980,4.50e-09,1;CL:0000819,5.72e-09,1;CL:0000988,9.64e-09,177 | |||
|ontology_enrichment_development_v019=CL:0000051;1.94e-24;53!CL:0000954;2.15e-16;2!UBERON:0004872;1.21e-10;7!UBERON:0001045;2.08e-09;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:12603;7.97e-10;1!DOID:0060073;4.68e-09;1!DOID:8675;4.68e-09;1!DOID:0060058;9.27e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:12603,7.98e-10,1;DOID:0060073,5.72e-09,1;DOID:8675,5.72e-09,1;DOID:0060058,9.82e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.27e-13!115;UBERON:0000178!2.44e-10!15;UBERON:0000179!2.44e-10!15;UBERON:0000463!2.44e-10!15;UBERON:0004177!8.56e-08!7 | |ontology_enrichment_uberon=UBERON:0007023!4.27e-13!115;UBERON:0000178!2.44e-10!15;UBERON:0000179!2.44e-10!15;UBERON:0000463!2.44e-10!15;UBERON:0004177!8.56e-08!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0002106;1.77e-11;3!UBERON:0002372;2.08e-09;1!UBERON:0001154;2.08e-09;1!UBERON:0001153;2.08e-09;1!UBERON:0009854;2.08e-09;1!UBERON:0001961;2.08e-09;1!UBERON:0001744;2.08e-09;1!UBERON:0001042;2.08e-09;1!UBERON:0001735;2.08e-09;1!UBERON:0000029;3.00e-09;1!UBERON:0004177;3.14e-07;5!UBERON:0005057;3.14e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,1.77e-11,3;UBERON:0004854,1.77e-11,3;UBERON:0009034,1.77e-11,3;UBERON:0002095,1.77e-11,3;UBERON:0004782,1.77e-11,3;UBERON:0003281,1.77e-11,3;UBERON:0009664,1.77e-11,3;UBERON:0002296,1.77e-11,3;UBERON:0005602,1.77e-11,3;UBERON:0001179,1.77e-11,3;UBERON:0006293,1.77e-11,3;UBERON:0001154,1.84e-09,1;UBERON:0001153,1.84e-09,1;UBERON:0001045,1.84e-09,1;UBERON:0002372,2.16e-09,1;UBERON:0001961,2.16e-09,1;UBERON:0001744,2.16e-09,1;UBERON:0001735,2.16e-09,1;UBERON:0000029,2.55e-09,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305653622991805,0.410502947249729,0.157421562627358,0,0,0,0,0,0,0,14.501261713717,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.03984977845291,2.18455444504853,4.44754626931777,8.10787422876364,8.00791974072025,2.87376219977242,5.94940385506376,6.67837628174755,8.53819453664173,3.52342313622563,5.73409842187843,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0.476981248610684,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.02979043692868,0,0,1.90585420366231,0.822724546172388,1.29694662238543,0.540031437238115,0,0,0,0,18.7661206876976,0,0,0,0.199579371432817,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.86797481743607,0,0,0.369254416383208,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.442287822516696,0,0,0,0,0,0,0,1.094728735294,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,2.97699613087171,0,2.19226677085613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38280785066935,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540219106755613,0,0,0,0,0,0,0,0,3.10146929333517,1.48253142339228,0,0,0,0,0,0.917458566809082,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0.426467963801962,0,0.0645889098360061,0.124149428591716,0,0,0,0.217716747896961,0,3.30025059771479,0.430333232356058,0,0,0,0,0,0,0,0,0,1.20764276154616,0 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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305653622991805,0.410502947249729,0.157421562627358,0,0,0,0,0,0,0,14.501261713717,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.03984977845291,2.18455444504853,4.44754626931777,8.10787422876364,8.00791974072025,2.87376219977242,5.94940385506376,6.67837628174755,8.53819453664173,3.52342313622563,5.73409842187843,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0.476981248610684,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.02979043692868,0,0,1.90585420366231,0.822724546172388,1.29694662238543,0.540031437238115,0,0,0,0,18.7661206876976,0,0,0,0.199579371432817,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.86797481743607,0,0,0.369254416383208,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.442287822516696,0,0,0,0,0,0,0,1.094728735294,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,2.97699613087171,0,2.19226677085613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38280785066935,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540219106755613,0,0,0,0,0,0,0,0,3.10146929333517,1.48253142339228,0,0,0,0,0,0.917458566809082,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0.426467963801962,0,0.0645889098360061,0.124149428591716,0,0,0,0.217716747896961,0,3.30025059771479,0.430333232356058,0,0,0,0,0,0,0,0,0,1.20764276154616,0 | ||
|short_description=p1@uc001yrs.2,p1@uc001yrx.1,p1@uc001yrz.1,p1@uc001yse.2,p1@uc001ysm.1 | |short_description=p1@uc001yrs.2,p1@uc001yrx.1,p1@uc001yrz.1,p1@uc001yse.2,p1@uc001ysm.1 | ||
}} | }} |
Latest revision as of 21:12, 18 September 2015
Short description: | p1@uc001yrs.2, p1@uc001yrx.1, p1@uc001yrz.1, p1@uc001yse.2, p1@uc001ysm.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_uc001yrs.2_5end, CAGE_peak_1_at_uc001yrx.1_5end, CAGE_peak_1_at_uc001yrz.1_5end, CAGE_peak_1_at_uc001yse.2_5end, CAGE_peak_1_at_uc001ysm.1_5end |
Coexpression cluster: | C282_acute_B_tonsil_CD19_submaxillary_lymph_throat |
Association with transcript: | 43bp_to_uc001yrs.2, uc001yrx.1, uc001yrz.1, uc001yse.2, uc001ysm.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 1.03e-94 | 14 |
lymphocyte of B lineage | 8.98e-73 | 24 |
pro-B cell | 8.98e-73 | 24 |
lymphocyte | 3.50e-36 | 53 |
common lymphoid progenitor | 3.50e-36 | 53 |
lymphoid lineage restricted progenitor cell | 3.35e-32 | 52 |
mature B cell | 2.52e-16 | 2 |
pre-B-II cell | 2.52e-16 | 2 |
transitional stage B cell | 2.52e-16 | 2 |
small pre-B-II cell | 2.52e-16 | 2 |
immature B cell | 2.52e-16 | 2 |
nongranular leukocyte | 5.63e-15 | 115 |
hematopoietic lineage restricted progenitor cell | 2.65e-12 | 120 |
leukocyte | 3.11e-12 | 136 |
precursor B cell | 3.34e-11 | 3 |
hematopoietic oligopotent progenitor cell | 6.79e-10 | 161 |
hematopoietic multipotent progenitor cell | 6.79e-10 | 161 |
hematopoietic stem cell | 2.31e-09 | 168 |
antibody secreting cell | 4.50e-09 | 1 |
plasma cell | 4.50e-09 | 1 |
plasmablast | 4.50e-09 | 1 |
B-1 B cell | 5.72e-09 | 1 |
hematopoietic cell | 9.64e-09 | 177 |
Ontology term | p-value | n |
---|---|---|
spleen | 1.77e-11 | 3 |
gastrointestinal system mesentery | 1.77e-11 | 3 |
stomach region | 1.77e-11 | 3 |
mesentery | 1.77e-11 | 3 |
gastrointestinal system serosa | 1.77e-11 | 3 |
mesentery of stomach | 1.77e-11 | 3 |
gut mesentery | 1.77e-11 | 3 |
dorsal mesentery | 1.77e-11 | 3 |
dorsal mesogastrium | 1.77e-11 | 3 |
peritoneal cavity | 1.77e-11 | 3 |
spleen primordium | 1.77e-11 | 3 |
vermiform appendix | 1.84e-09 | 1 |
caecum | 1.84e-09 | 1 |
midgut | 1.84e-09 | 1 |
tonsil | 2.16e-09 | 1 |
mucosa-associated lymphoid tissue | 2.16e-09 | 1 |
lymphoid tissue | 2.16e-09 | 1 |
tonsillar ring | 2.16e-09 | 1 |
lymph node | 2.55e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
acute leukemia | 7.98e-10 | 1 |
lymphatic system cancer | 5.72e-09 | 1 |
lymphosarcoma | 5.72e-09 | 1 |
lymphoma | 9.82e-08 | 10 |