FFCP PHASE1:Hg19::chr12:52445218..52445237,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:52445218..52445237,+
|short_description=p1@NR4A1
|description=CAGE_peak_1_at_NR4A1_5end
|association_with_transcript=0bp_to_ENST00000394824,ENST0000054823...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3164 | |EntrezGene=3164 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7980 | |HGNC=7980 | ||
|TSSclassifier=strong | |||
|UniProt=P22736,Q15627,F8VVX9 | |UniProt=P22736,Q15627,F8VVX9 | ||
|association_with_transcript=0bp_to_ENST00000394824,ENST00000548232,ENST00000550525,ENST00000550763_5end | |||
|cluster_id=chr12:52445218..52445237,+ | |||
|coexpression_cluster_id=C1018 | |||
|description=CAGE_peak_1_at_NR4A1_5end | |||
|id=chr12:52445218..52445237,+ | |||
|ontology_enrichment_celltype=CL:0000860!6.79e-19!45;CL:0002057!2.09e-18!42;CL:0000766!2.16e-12!76;CL:0000557!3.85e-12!71;CL:0002009!1.73e-10!65;CL:0000839!8.30e-10!70;CL:0002194!1.43e-09!63;CL:0000576!1.43e-09!63;CL:0000040!1.43e-09!63;CL:0000559!1.43e-09!63;CL:0000738!2.48e-09!140 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.62e-14;33!CL:0002057;7.62e-14;33!CL:0000473;5.04e-09;39!CL:0000234;5.04e-09;39!CL:0000576;3.69e-08;48!CL:0000766;4.86e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.61e-18,42;CL:0002057,1.61e-18,42;CL:0000473,3.03e-15,48;CL:0000234,3.03e-15,48;CL:0000766,1.67e-11,72;CL:0000557,3.00e-11,67;CL:0002009,1.30e-09,61;CL:0000839,4.34e-09,66;CL:0000738,9.59e-09,136;CL:0002194,1.04e-08,59;CL:0000576,1.04e-08,59;CL:0000040,1.04e-08,59;CL:0000559,1.04e-08,59 | |||
|ontology_enrichment_development_v019=CL:0002057;2.10e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.86e-16!115;UBERON:0002371!1.23e-10!80;UBERON:0002390!1.25e-10!102;UBERON:0003061!1.25e-10!102;UBERON:0001474!5.41e-10!86;UBERON:0000062!7.01e-09!511;UBERON:0004765!3.12e-08!101;UBERON:0001434!3.12e-08!101;UBERON:0002193!3.95e-08!112;UBERON:0002405!5.51e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.62e-16,114;UBERON:0002390,6.29e-10,98;UBERON:0003061,6.29e-10,98;UBERON:0002371,7.71e-10,76;UBERON:0001474,3.83e-09,82;UBERON:0004765,4.70e-08,90;UBERON:0001434,1.62e-07,100;UBERON:0002193,2.08e-07,108;UBERON:0002405,4.92e-07,93 | |||
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| ||
|short_description=p1@NR4A1 | |||
}} | }} |
Latest revision as of 21:12, 18 September 2015
Short description: | p1@NR4A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NR4A1_5end |
Coexpression cluster: | C1018_immature_CD14_Mast_cervical_seminal_heart_ovary |
Association with transcript: | 0bp_to_ENST00000394824, ENST00000548232, ENST00000550525, ENST00000550763_5end |
EntrezGene: | NR4A1 |
HGNC: | 7980 |
UniProt: | P22736Q15627F8VVX9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.61e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.61e-18 | 42 |
defensive cell | 3.03e-15 | 48 |
phagocyte | 3.03e-15 | 48 |
myeloid leukocyte | 1.67e-11 | 72 |
granulocyte monocyte progenitor cell | 3.00e-11 | 67 |
macrophage dendritic cell progenitor | 1.30e-09 | 61 |
myeloid lineage restricted progenitor cell | 4.34e-09 | 66 |
leukocyte | 9.59e-09 | 136 |
monopoietic cell | 1.04e-08 | 59 |
monocyte | 1.04e-08 | 59 |
monoblast | 1.04e-08 | 59 |
promonocyte | 1.04e-08 | 59 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.62e-16 | 114 |
hematopoietic system | 6.29e-10 | 98 |
blood island | 6.29e-10 | 98 |
bone marrow | 7.71e-10 | 76 |
bone element | 3.83e-09 | 82 |
skeletal element | 4.70e-08 | 90 |
skeletal system | 1.62e-07 | 100 |
hemolymphoid system | 2.08e-07 | 108 |
immune system | 4.92e-07 | 93 |