FFCP PHASE1:Hg19::chr19:46916805..46916852,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=83987 | |EntrezGene=83987 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25367 | |HGNC=25367 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H0W5,F5GX02 | |UniProt=Q9H0W5,F5GX02 | ||
|association_with_transcript=0bp_to_ENST00000307522,ENST00000540252_5end | |association_with_transcript=0bp_to_ENST00000307522,ENST00000540252_5end | ||
|cluster_id=chr19:46916805..46916852,- | |||
|coexpression_cluster_id=C3805 | |||
|description=CAGE_peak_1_at_CCDC8_5end | |description=CAGE_peak_1_at_CCDC8_5end | ||
|id=chr19:46916805..46916852,- | |id=chr19:46916805..46916852,- | ||
|ontology_enrichment_celltype=CL:0000055!6.18e-20!180;CL:0000057!1.92e-10!75;CL:0000183!3.81e-09!59;CL:0000680!5.58e-08!57;CL:0000056!5.58e-08!57;CL:0000355!5.58e-08!57;CL:0000393!6.83e-08!60;CL:0000211!6.83e-08!60;CL:0000187!1.61e-07!54 | |ontology_enrichment_celltype=CL:0000055!6.18e-20!180;CL:0000057!1.92e-10!75;CL:0000183!3.81e-09!59;CL:0000680!5.58e-08!57;CL:0000056!5.58e-08!57;CL:0000355!5.58e-08!57;CL:0000393!6.83e-08!60;CL:0000211!6.83e-08!60;CL:0000187!1.61e-07!54 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.16e-09,76;CL:0000680,1.68e-07,58;CL:0000056,1.68e-07,58;CL:0000355,1.68e-07,58;CL:0000393,1.96e-07,61;CL:0000211,1.96e-07,61;CL:0000187,4.90e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.27e-14!365;UBERON:0003103!1.12e-13!69;UBERON:0000481!2.14e-13!347;UBERON:0000468!1.03e-10!659;UBERON:0000119!2.69e-10!312;UBERON:0000914!3.06e-10!83;UBERON:0002329!3.06e-10!83;UBERON:0003077!3.06e-10!83;UBERON:0003059!3.06e-10!83;UBERON:0007282!3.06e-10!83;UBERON:0009618!3.06e-10!83;UBERON:0007285!3.06e-10!83;UBERON:0002100!6.45e-10!216;UBERON:0000486!1.01e-09!82;UBERON:0000483!1.23e-09!309;UBERON:0005256!2.89e-09!143;UBERON:0004290!9.80e-09!70;UBERON:0001134!1.51e-08!61;UBERON:0002036!1.51e-08!61;UBERON:0003082!1.51e-08!61;UBERON:0002385!1.97e-08!63;UBERON:0001015!1.97e-08!63;UBERON:0000383!1.97e-08!63;UBERON:0000922!9.68e-08!612;UBERON:0006554!1.59e-07!44;UBERON:0001008!2.20e-07!45;UBERON:0007100!5.70e-07!27;UBERON:0002113!8.50e-07!27;UBERON:0003918!8.50e-07!27;UBERON:0005095!8.50e-07!27;UBERON:0007687!8.50e-07!27 | |ontology_enrichment_uberon=UBERON:0000475!1.27e-14!365;UBERON:0003103!1.12e-13!69;UBERON:0000481!2.14e-13!347;UBERON:0000468!1.03e-10!659;UBERON:0000119!2.69e-10!312;UBERON:0000914!3.06e-10!83;UBERON:0002329!3.06e-10!83;UBERON:0003077!3.06e-10!83;UBERON:0003059!3.06e-10!83;UBERON:0007282!3.06e-10!83;UBERON:0009618!3.06e-10!83;UBERON:0007285!3.06e-10!83;UBERON:0002100!6.45e-10!216;UBERON:0000486!1.01e-09!82;UBERON:0000483!1.23e-09!309;UBERON:0005256!2.89e-09!143;UBERON:0004290!9.80e-09!70;UBERON:0001134!1.51e-08!61;UBERON:0002036!1.51e-08!61;UBERON:0003082!1.51e-08!61;UBERON:0002385!1.97e-08!63;UBERON:0001015!1.97e-08!63;UBERON:0000383!1.97e-08!63;UBERON:0000922!9.68e-08!612;UBERON:0006554!1.59e-07!44;UBERON:0001008!2.20e-07!45;UBERON:0007100!5.70e-07!27;UBERON:0002113!8.50e-07!27;UBERON:0003918!8.50e-07!27;UBERON:0005095!8.50e-07!27;UBERON:0007687!8.50e-07!27 | ||
|ontology_enrichment_uberon_v019=UBERON:0007100;6.28e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003103,2.17e-13,68;UBERON:0003104,5.33e-11,160;UBERON:0009142,5.33e-11,160;UBERON:0000119,7.72e-10,309;UBERON:0000486,2.01e-09,83;UBERON:0007503,2.73e-09,78;UBERON:0000483,3.48e-09,306;UBERON:0007524,2.18e-08,73;UBERON:0002329,2.44e-08,71;UBERON:0003059,2.44e-08,71;UBERON:0007282,2.44e-08,71;UBERON:0004290,2.44e-08,71;UBERON:0009618,2.44e-08,71;UBERON:0002100,2.51e-08,199;UBERON:0003077,2.90e-08,72;UBERON:0007285,2.90e-08,72;UBERON:0006554,3.54e-08,47;UBERON:0001134,4.46e-08,62;UBERON:0002036,4.46e-08,62;UBERON:0003082,4.46e-08,62;UBERON:0001008,4.96e-08,48;UBERON:0002385,5.64e-08,64;UBERON:0001015,5.64e-08,64;UBERON:0000383,5.64e-08,64;UBERON:0000922,3.29e-07,592;UBERON:0007100,4.03e-07,27 | |||
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|phase1_expression=28.1601487869363,14.9870366723688,13.9544860055011,15.0109947529696,15.6436383049551,7.85104671690332,35.4619829435635,9.47579810140246,3.91778442299758,19.1672470471177,32.0988537267317,13.5433650720707,16.3535526501641,24.3819715331292,20.2152399194029,0.672325146451775,0,0.730310090387373,0.487932798790507,20.9305798730539,21.4200725806466,28.524379654506,8.87331560106276,9.85495860524766,9.41569796961021,0,0,0,0,0,0.309632246632152,17.4690032650996,24.3976794210383,9.98335827450327,0,0,3.22960483268332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.526768169550154,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,43.8852359365131,18.1089232119982,18.9236591528425,11.5660528763061,11.0294340339896,9.70471677037519,7.15757352345989,25.7916481260397,12.1004565970007,15.5210578223795,15.8980962104558,7.7932549921139,60.8373131448545,30.0335398655388,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0.35576626268671,0,0,0,0.488124115096339,0,0,1.07159673940896,0,0.788280363383256,0,0,0.366403487860815,0,0,44.917687370681,1.98788780678127,3.67228483827281,1.45650098894541,13.1944845544454,10.6400514659507,15.1382952038423,24.5522690178321,18.500066131287,21.7847724779836,10.9115644376447,10.9519475086017,39.655646042972,51.2796572787199,21.7918931605431,3.1216007683032,1.1409436430889,5.08125513876124,15.501353820977,18.6153886023351,17.5563508377811,1.83738754129404,13.6346092216062,4.23635702820638,4.75201142912821,1.97813543422845,12.7422590671324,20.8399261126709,16.4969391674985,17.7668298218189,0.554128230968366,7.02364193409341,2.75839016219118,6.30999847407706,11.002921766522,11.1221574127094,15.1625746061183,9.32500365102072,0.600182192168805,0.412210116953756,13.912589162464,12.0975956615533,13.5021065793013,16.174542856759,13.8838575834263,10.8618880397913,25.0551388069158,11.3603069605317,6.14587799188606,20.516831669569,10.0495643644914,4.36393792945335,6.59650569394709,12.9292128497371,10.7349112340403,13.8270792014727,18.2443456827052,14.1299676490352,23.7235283399289,0,10.2918550110862,1.38134921352481,6.50115099244771,4.33127689001751,0,0,0,0,0,0,0,0,0,1.4763109092493,18.231430594448,27.1638847478724,45.572700529518,0,0,0,0,0.122988438543114,14.4116960650761,31.6080821976842,11.240175325762,0.804231779293047,14.3512089995721,18.2452650973782,7.27954349695705,11.5465073620219,13.7957181920341,12.7975476717046,0.288732895522148,0,0.190254152234598,0,0,0,0,0,6.56136837907439,8.06314215354526,10.3495820986942,21.3149284032779,38.9449477608709,82.0438933413552,0,0.088048434013226,0.207328115540772,0,0.12624243342638,3.23839260890062,1.14596527667483,1.17217447210047,1.71072446022705,2.46785982487976,1.50171528921959,2.00078502841405,17.8288424109124,16.5664826156646,15.9144080231462,5.04159691455333,35.7656445851882,8.45302752556,11.4353390131494,12.4808924293639,23.4058710578549,17.0218958427934,17.5838638150626,22.4475450043292,52.63429572297,23.0507294298615,8.79487697593085,18.8357732833549,17.4229412045354,0.904318131178758,0,2.19940580600526,0,0,0,1.67737398844108,3.44585807502342,4.27910715122155,7.23906533337896,12.1231030304726,12.3552064635528,0,0,0,0,8.13102797511883,3.90419561572865,3.86644406388848,2.68026024534958,1.91381625495949,0,0,0,20.2440961336581,29.5100607425209,20.8874068248796,8.7347761842939,8.56459146226377,9.30444248700215,11.7141414992713,41.8315078621529,65.9481761762356,13.4514992680256,22.5836703502048,24.1523610789631,10.1653828927657,49.7334939955361,40.8340674334919,0,0,0,7.27506171471023,31.6227335069944,23.2840525863854,16.8713309316768,19.7965945541601,26.9433690655751,11.2762451345017,19.4448754645347,11.903190164627,8.90508398669946,18.350953562516,15.9805552781814,7.80207982131187,12.9813607295905,12.0858793598358,0,26.4668540800336,4.60404944679482,13.3184759870944,22.9434871688463,15.6038053801715,20.7551821937409,10.7051318575137,31.3739907670742,17.5367069583913,12.5606438382522,1.13733384070897,0.850468526382578,5.82972973475776,12.3381802152231,26.2818044417537,48.6639080639208,17.0767102940176,12.4661401339309,15.8951075852747,0,0,8.46285412884084,17.0567615763847,10.4121086292577,2.67906630284078,0,0,14.9309039879005,9.1008434445113,12.8547143875328,28.1311790230075,17.0993964997255,26.2491283781682,20.261976155226,16.7575581994507,30.7435391098164,20.4543905798642,44.070857645135,11.7352289906294,8.64855303142978,15.6963636368338,10.115778085555,13.9453664789186,5.35180989612088,5.5762981612848,0.924100740528266,5.85536633348724,6.95946393660058,0.55597265731176,2.28999818787186,18.6079184679834,10.1241415909992,11.8190720232771,28.9164504181807,22.2528273777639,10.8189104294818,2.35484592059769,18.886608046248,23.0611104978286,23.9159176761743,5.86329196562617,4.75530963519025,1.26377536871694,41.9365015617048,2.43713489631284,1.05650146756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| ||
|short_description=p1@CCDC8 | |short_description=p1@CCDC8 | ||
}} | }} |
Latest revision as of 20:35, 18 September 2015
Short description: | p1@CCDC8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CCDC8_5end |
Coexpression cluster: | C3805_Mammary_skeletal_Mesenchymal_Osteoblast_Corneal_Pericytes_Fibroblast |
Association with transcript: | 0bp_to_ENST00000307522, ENST00000540252_5end |
EntrezGene: | CCDC8 |
HGNC: | 25367 |
UniProt: | Q9H0W5F5GX02 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.16e-09 | 76 |
muscle precursor cell | 1.68e-07 | 58 |
myoblast | 1.68e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.68e-07 | 58 |
electrically responsive cell | 1.96e-07 | 61 |
electrically active cell | 1.96e-07 | 61 |
muscle cell | 4.90e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
compound organ | 2.17e-13 | 68 |
mesenchyme | 5.33e-11 | 160 |
entire embryonic mesenchyme | 5.33e-11 | 160 |
cell layer | 7.72e-10 | 309 |
multilaminar epithelium | 2.01e-09 | 83 |
epithelial vesicle | 2.73e-09 | 78 |
epithelium | 3.48e-09 | 306 |
dense mesenchyme tissue | 2.18e-08 | 73 |
somite | 2.44e-08 | 71 |
presomitic mesoderm | 2.44e-08 | 71 |
presumptive segmental plate | 2.44e-08 | 71 |
dermomyotome | 2.44e-08 | 71 |
trunk paraxial mesoderm | 2.44e-08 | 71 |
trunk | 2.51e-08 | 199 |
paraxial mesoderm | 2.90e-08 | 72 |
presumptive paraxial mesoderm | 2.90e-08 | 72 |
urinary system structure | 3.54e-08 | 47 |
skeletal muscle tissue | 4.46e-08 | 62 |
striated muscle tissue | 4.46e-08 | 62 |
myotome | 4.46e-08 | 62 |
renal system | 4.96e-08 | 48 |
muscle tissue | 5.64e-08 | 64 |
musculature | 5.64e-08 | 64 |
musculature of body | 5.64e-08 | 64 |
embryo | 3.29e-07 | 592 |
primary circulatory organ | 4.03e-07 | 27 |