FFCP PHASE1:Hg19::chr12:51985001..51985037,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6334 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10596 | |||
|TSSclassifier=strong | |||
|UniProt=Q9UQD0 | |||
|association_with_transcript=0bp_to_ENST00000354534,NM_014191,uc001ryw.2_5end | |||
|cluster_id=chr12:51985001..51985037,+ | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_1_at_SCN8A_5end | |||
|id=chr12:51985001..51985037,+ | |||
|ontology_enrichment_celltype=CL:0000055!7.51e-18!180;CL:0000057!1.26e-11!75;CL:0002620!9.58e-10!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;4.61e-12;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,4.77e-12,23;CL:0000057,1.73e-09,76 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.90e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.93e-33!94;UBERON:0001016!2.93e-33!94;UBERON:0001017!1.67e-30!82;UBERON:0005743!2.55e-29!86;UBERON:0001049!1.12e-28!57;UBERON:0005068!1.12e-28!57;UBERON:0006241!1.12e-28!57;UBERON:0007135!1.12e-28!57;UBERON:0000955!3.87e-25!69;UBERON:0006238!3.87e-25!69;UBERON:0002616!4.39e-24!59;UBERON:0002780!3.38e-23!41;UBERON:0001890!3.38e-23!41;UBERON:0006240!3.38e-23!41;UBERON:0002346!3.83e-23!90;UBERON:0003075!4.63e-23!86;UBERON:0007284!4.63e-23!86;UBERON:0003080!5.70e-23!42;UBERON:0000924!2.12e-19!173;UBERON:0006601!2.12e-19!173;UBERON:0002020!4.35e-19!34;UBERON:0003528!4.35e-19!34;UBERON:0001893!4.54e-19!34;UBERON:0004121!4.59e-19!169;UBERON:0001869!5.71e-19!32;UBERON:0002791!2.40e-18!33;UBERON:0003056!2.73e-18!61;UBERON:0000475!8.27e-17!365;UBERON:0000033!1.48e-16!123;UBERON:0002619!3.96e-15!22;UBERON:0000153!4.82e-15!129;UBERON:0007811!4.82e-15!129;UBERON:0000956!1.37e-14!25;UBERON:0000203!1.37e-14!25;UBERON:0001950!8.30e-14!20;UBERON:0000483!1.30e-11!309;UBERON:0000119!4.48e-11!312;UBERON:0000025!6.58e-10!194;UBERON:0003076!5.86e-07!15;UBERON:0003057!5.86e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.85e-19;32!UBERON:0002780;6.33e-19;41!UBERON:0001890;6.33e-19;41!UBERON:0002619;7.30e-19;22!UBERON:0001893;1.22e-18;34!UBERON:0003528;1.55e-18;34!UBERON:0002020;1.55e-18;34!UBERON:0002791;6.58e-18;32!UBERON:0000073;1.32e-17;53!UBERON:0002616;1.32e-17;53!UBERON:0001950;3.25e-17;20!UBERON:0000956;2.03e-16;25!UBERON:0000203;2.03e-16;25!UBERON:0000955;2.71e-13;68!UBERON:0001016;4.68e-13;83!UBERON:0001017;5.58e-13;75!UBERON:0000200;7.69e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.75e-37,89;UBERON:0001017,1.20e-32,81;UBERON:0001049,1.59e-31,56;UBERON:0005068,1.59e-31,56;UBERON:0006241,1.59e-31,56;UBERON:0007135,1.59e-31,56;UBERON:0000073,7.15e-30,53;UBERON:0002616,7.15e-30,53;UBERON:0000955,8.44e-27,68;UBERON:0006238,8.44e-27,68;UBERON:0002780,2.47e-26,41;UBERON:0001890,2.47e-26,41;UBERON:0003080,2.47e-26,41;UBERON:0006240,2.47e-26,41;UBERON:0001869,8.52e-22,32;UBERON:0003075,1.72e-21,82;UBERON:0007284,1.72e-21,82;UBERON:0003528,2.98e-21,34;UBERON:0002020,2.98e-21,34;UBERON:0001893,3.14e-21,34;UBERON:0002346,5.86e-21,86;UBERON:0002791,8.00e-20,32;UBERON:0002619,7.68e-19,22;UBERON:0004121,4.28e-18,171;UBERON:0000924,4.28e-18,171;UBERON:0006601,4.28e-18,171;UBERON:0003056,1.61e-17,61;UBERON:0001950,3.44e-17,20;UBERON:0000956,2.22e-16,25;UBERON:0000203,2.22e-16,25;UBERON:0010314,8.32e-15,132;UBERON:0010371,1.44e-14,104;UBERON:0011216,9.95e-13,223;UBERON:0000025,2.40e-08,192;UBERON:0000200,7.86e-07,6 | |||
|phase1_expression=0.726713517082227,0.856402095563933,0.845726424575827,2.00146596706261,0.893922188854576,2.61701557230111,0,1.26343974685366,1.56711376919903,0,0,0,0,0.74259811776028,0.662794751455832,1.34465029290355,1.80808358407193,6.57279081348636,3.41552959153355,0.369363174230364,0.408001382488506,0.626909442956176,1.43117993565528,0.958120975510189,0.753255837568817,0,0,0,0,0.383829398097213,0.77408061658038,0,0,0,0.619737604642413,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0.821127996921047,0.201606743224732,0.802320587350522,0,0,0,0,3.61439152384566,3.00802746381534,2.462390822334,0.795285947051099,3.40644409211845,0.472674085820339,0.221729397462564,0.351339142772504,5.82856885964821,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0.208994966536811,0,0,0,0.402829317109147,0,0,0,0,0.17859945656816,0.22452937262617,0.675668882899933,1.53316637465883,0,0,0,0,0,11.4303548889923,0.633152558322899,14.0353731662012,3.72887606973458,1.41867352879343,0.560677600142307,0,0.49333509683432,0.311211035399766,0.269421344139376,0.163461903113459,0,0,1.17160715916898,2.80944069147288,0,4.63290909710583,4.81481444439436,7.93177427403845,5.89893388149444,1.42907919878425,1.84251475967652,0.723280468230358,4.75201142912821,3.21447008062124,0.910161361938026,0.718618141816238,2.35670559535693,2.87772595705518,2.21651292387346,3.5118209670467,4.59731693698529,2.10333282469236,0.113432183160021,12.5572744982203,4.91181994282705,6.56988893594642,10.2030972668697,5.46178404963726,18.034837803194,7.44467425326359,15.0210935694727,2.14361411354637,14.6411589061586,6.35144300631865,4.20279747728911,17.3954700333141,3.32481924151213,2.88253006927829,0,0.272746120590835,0.286804595389004,5.61079048196139,5.83130980614535,3.02104251460748,2.90250954043037,3.28017106138317,9.12443397689575,0,1.28648187638577,0,0.464367928031979,0.721879481669586,0.354920400119532,0.505754070234305,0,0.330881918197182,0,0,0.269662616320329,0.392442930250692,0,0,0,0.8231480226628,0,1.26755034821831,3.9313088667105,1.77236972004421,3.09024169590255,0.491953754172454,0.514703430895577,0.98775256867763,0,0.201057944823262,0,0.651616610620649,4.15973914111831,2.88662684050547,0.34779121492523,0.70445216541493,0,0.462985512576611,0,0,0,0,0,0,0,0.503946384596579,0.141775097242386,0.0895585227028483,0,0,0,0,0.207328115540772,0,0,0.063497894292169,0,0,0,0.411309970813294,0,0.285826432630578,0.112131084345361,0,0,4.52451005152222,0,4.22651376278,3.72313363218819,6.24044621468197,1.02882949704857,1.41849132023278,0.532844358032199,0.142977993658148,0,0,1.30294473717494,0,0,0.602878754119172,3.48613383440118,3.19913571782583,0,0,0,0.958499421966331,0,2.85273810081437,1.59259437334337,2.67119219315498,2.14873155887875,0.896681151948218,0,0.215627574859517,0.128343036279748,1.77866236955724,9.10978977003352,3.86644406388848,4.02039036802437,8.29320377149112,0,0,0,0,0.500170521059677,0.813795071099207,3.95144636908534,3.92543775353756,6.46579901639132,3.5142424497814,3.00946099727719,0,2.0694614258501,1.99267679560631,2.76553752812555,6.25562024170197,0,0,0,0,0.320182673410333,0,3.32870879020994,0.604780586659361,2.48107807818777,7.05925077125087,2.52594084989766,2.94720043288112,2.04682899626681,3.21707842287215,1.48418066444991,2.62156479464514,0.710246901252508,0.98552587216571,0,1.97557643381931,1.69203229428271,0.40101294060657,0,0.34444334449382,1.45672934405374,3.40923478894503,0,0.462092022626489,0,0,0,0,0,0.431831832204279,1.54227252690289,0,0,0.254876273045038,1.66215201785745,0.223874754722178,0,0,0.256450125116389,0,0.325378394664303,0.206082023295445,0.183138929636687,0,0.574265537996172,1.95018073810956,0,2.90012154876366,0.770243085573222,1.07452572308291,1.24052915236078,1.93356440762893,3.77043404176994,2.04543905798642,1.51354460599453,0,0,0,0,0.464845549297286,8.49993336442728,2.7881490806424,0.308033580176089,0.532306030317022,3.47973196830029,1.8532421910392,0.429374660225974,0,0.949138274156178,1.33441135746677,0.255897791311334,0,1.90921948755562,2.35484592059769,2.15846949099978,2.47083326762449,1.53156123049392,0.606547444719948,0,0.421258456238981,0,4.38684281336312,0,2.04749867111979,0.707027159768564,3.39024349860728,0.551365343546124,0,1.31535265576129,0,0,3.04365565444056,4.957175969596,2.25356482025793,2.29458163526482,3.34046739444612,2.49669736036875,3.19284957663538,2.11107635297664,3.62224382255892,0,0.349934720244983,0,0,0,0.188287601553558,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.747768497892312,2.88743956579008,0,0,0,1.92082977040718,1.11598390910176,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,1.03051603426729,0,0,0,0.19538809540204,0,0,0,0,0,0,0.146508179271894,1.33496573924465,0,1.98895302764489,0,0,0,51.6956776838475,23.9138007897872,4.89758302100786,0.49441162268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| |||
|short_description=p1@SCN8A | |||
}} |
Latest revision as of 20:25, 18 September 2015
Short description: | p1@SCN8A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SCN8A_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 0bp_to_ENST00000354534, NM_014191, uc001ryw.2_5end |
EntrezGene: | SCN8A |
HGNC: | 10596 |
UniProt: | Q9UQD0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 4.77e-12 | 23 |
fibroblast | 1.73e-09 | 76 |