FFCP PHASE1:Hg19::chr12:51985001..51985037,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6334 | |EntrezGene=6334 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10596 | |HGNC=10596 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UQD0 | |UniProt=Q9UQD0 | ||
|association_with_transcript=0bp_to_ENST00000354534,NM_014191,uc001ryw.2_5end | |association_with_transcript=0bp_to_ENST00000354534,NM_014191,uc001ryw.2_5end | ||
|cluster_id=chr12:51985001..51985037,+ | |||
|coexpression_cluster_id=C3 | |coexpression_cluster_id=C3 | ||
|description=CAGE_peak_1_at_SCN8A_5end | |description=CAGE_peak_1_at_SCN8A_5end | ||
|id=chr12:51985001..51985037,+ | |id=chr12:51985001..51985037,+ | ||
|ontology_enrichment_celltype=CL:0000055!7.51e-18!180;CL:0000057!1.26e-11!75;CL:0002620!9.58e-10!23 | |ontology_enrichment_celltype=CL:0000055!7.51e-18!180;CL:0000057!1.26e-11!75;CL:0002620!9.58e-10!23 | ||
|ontology_enrichment_celltype_v019=CL:0002620;4.61e-12;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,4.77e-12,23;CL:0000057,1.73e-09,76 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.90e-07;82 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.93e-33!94;UBERON:0001016!2.93e-33!94;UBERON:0001017!1.67e-30!82;UBERON:0005743!2.55e-29!86;UBERON:0001049!1.12e-28!57;UBERON:0005068!1.12e-28!57;UBERON:0006241!1.12e-28!57;UBERON:0007135!1.12e-28!57;UBERON:0000955!3.87e-25!69;UBERON:0006238!3.87e-25!69;UBERON:0002616!4.39e-24!59;UBERON:0002780!3.38e-23!41;UBERON:0001890!3.38e-23!41;UBERON:0006240!3.38e-23!41;UBERON:0002346!3.83e-23!90;UBERON:0003075!4.63e-23!86;UBERON:0007284!4.63e-23!86;UBERON:0003080!5.70e-23!42;UBERON:0000924!2.12e-19!173;UBERON:0006601!2.12e-19!173;UBERON:0002020!4.35e-19!34;UBERON:0003528!4.35e-19!34;UBERON:0001893!4.54e-19!34;UBERON:0004121!4.59e-19!169;UBERON:0001869!5.71e-19!32;UBERON:0002791!2.40e-18!33;UBERON:0003056!2.73e-18!61;UBERON:0000475!8.27e-17!365;UBERON:0000033!1.48e-16!123;UBERON:0002619!3.96e-15!22;UBERON:0000153!4.82e-15!129;UBERON:0007811!4.82e-15!129;UBERON:0000956!1.37e-14!25;UBERON:0000203!1.37e-14!25;UBERON:0001950!8.30e-14!20;UBERON:0000483!1.30e-11!309;UBERON:0000119!4.48e-11!312;UBERON:0000025!6.58e-10!194;UBERON:0003076!5.86e-07!15;UBERON:0003057!5.86e-07!15 | |ontology_enrichment_uberon=UBERON:0000073!2.93e-33!94;UBERON:0001016!2.93e-33!94;UBERON:0001017!1.67e-30!82;UBERON:0005743!2.55e-29!86;UBERON:0001049!1.12e-28!57;UBERON:0005068!1.12e-28!57;UBERON:0006241!1.12e-28!57;UBERON:0007135!1.12e-28!57;UBERON:0000955!3.87e-25!69;UBERON:0006238!3.87e-25!69;UBERON:0002616!4.39e-24!59;UBERON:0002780!3.38e-23!41;UBERON:0001890!3.38e-23!41;UBERON:0006240!3.38e-23!41;UBERON:0002346!3.83e-23!90;UBERON:0003075!4.63e-23!86;UBERON:0007284!4.63e-23!86;UBERON:0003080!5.70e-23!42;UBERON:0000924!2.12e-19!173;UBERON:0006601!2.12e-19!173;UBERON:0002020!4.35e-19!34;UBERON:0003528!4.35e-19!34;UBERON:0001893!4.54e-19!34;UBERON:0004121!4.59e-19!169;UBERON:0001869!5.71e-19!32;UBERON:0002791!2.40e-18!33;UBERON:0003056!2.73e-18!61;UBERON:0000475!8.27e-17!365;UBERON:0000033!1.48e-16!123;UBERON:0002619!3.96e-15!22;UBERON:0000153!4.82e-15!129;UBERON:0007811!4.82e-15!129;UBERON:0000956!1.37e-14!25;UBERON:0000203!1.37e-14!25;UBERON:0001950!8.30e-14!20;UBERON:0000483!1.30e-11!309;UBERON:0000119!4.48e-11!312;UBERON:0000025!6.58e-10!194;UBERON:0003076!5.86e-07!15;UBERON:0003057!5.86e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.85e-19;32!UBERON:0002780;6.33e-19;41!UBERON:0001890;6.33e-19;41!UBERON:0002619;7.30e-19;22!UBERON:0001893;1.22e-18;34!UBERON:0003528;1.55e-18;34!UBERON:0002020;1.55e-18;34!UBERON:0002791;6.58e-18;32!UBERON:0000073;1.32e-17;53!UBERON:0002616;1.32e-17;53!UBERON:0001950;3.25e-17;20!UBERON:0000956;2.03e-16;25!UBERON:0000203;2.03e-16;25!UBERON:0000955;2.71e-13;68!UBERON:0001016;4.68e-13;83!UBERON:0001017;5.58e-13;75!UBERON:0000200;7.69e-07;6 | |||
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|short_description=p1@SCN8A | |short_description=p1@SCN8A | ||
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Latest revision as of 20:25, 18 September 2015
Short description: | p1@SCN8A |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SCN8A_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 0bp_to_ENST00000354534, NM_014191, uc001ryw.2_5end |
EntrezGene: | SCN8A |
HGNC: | 10596 |
UniProt: | Q9UQD0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 4.77e-12 | 23 |
fibroblast | 1.73e-09 | 76 |