FFCP PHASE1:Hg19::chr18:12884497..12884535,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5771 | |EntrezGene=5771 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9650 | |HGNC=9650 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-160bp_to_ENST00000327283_5end | |association_with_transcript=-160bp_to_ENST00000327283_5end | ||
|cluster_id=chr18:12884497..12884535,- | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_3_at_PTPN2_5end | |description=CAGE_peak_3_at_PTPN2_5end | ||
|id=chr18:12884497..12884535,- | |id=chr18:12884497..12884535,- | ||
|ontology_enrichment_celltype=CL:0002057!1.84e-42!42;CL:0000860!3.99e-40!45;CL:0000738!5.14e-40!140;CL:0000766!1.11e-39!76;CL:0000557!1.48e-38!71;CL:0000037!2.81e-38!172;CL:0000566!2.81e-38!172;CL:0000988!2.95e-37!182;CL:0002009!3.48e-37!65;CL:0000763!5.79e-37!112;CL:0000049!5.79e-37!112;CL:0002032!2.23e-35!165;CL:0000837!2.23e-35!165;CL:0002194!3.51e-35!63;CL:0000576!3.51e-35!63;CL:0000040!3.51e-35!63;CL:0000559!3.51e-35!63;CL:0000839!6.09e-34!70;CL:0002087!9.90e-32!119;CL:0002031!2.69e-30!124;CL:0002393!5.40e-10!9;CL:0002397!5.40e-10!9;CL:0002320!2.75e-09!365;CL:0000134!2.87e-09!358;CL:0000990!3.18e-08!8;CL:0000451!5.58e-08!10;CL:0000219!8.50e-07!390 | |ontology_enrichment_celltype=CL:0002057!1.84e-42!42;CL:0000860!3.99e-40!45;CL:0000738!5.14e-40!140;CL:0000766!1.11e-39!76;CL:0000557!1.48e-38!71;CL:0000037!2.81e-38!172;CL:0000566!2.81e-38!172;CL:0000988!2.95e-37!182;CL:0002009!3.48e-37!65;CL:0000763!5.79e-37!112;CL:0000049!5.79e-37!112;CL:0002032!2.23e-35!165;CL:0000837!2.23e-35!165;CL:0002194!3.51e-35!63;CL:0000576!3.51e-35!63;CL:0000040!3.51e-35!63;CL:0000559!3.51e-35!63;CL:0000839!6.09e-34!70;CL:0002087!9.90e-32!119;CL:0002031!2.69e-30!124;CL:0002393!5.40e-10!9;CL:0002397!5.40e-10!9;CL:0002320!2.75e-09!365;CL:0000134!2.87e-09!358;CL:0000990!3.18e-08!8;CL:0000451!5.58e-08!10;CL:0000219!8.50e-07!390 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.56e-91;33!CL:0002057;2.56e-91;33!CL:0000473;1.33e-63;39!CL:0000234;1.33e-63;39!CL:0000576;9.06e-50;48!CL:0000766;5.06e-35;69!CL:0002087;9.77e-18;104!CL:0000763;5.43e-16;100!CL:0000738;1.35e-11;136!CL:0000988;2.69e-07;177!CL:0002393;2.87e-07;6!CL:0002397;2.87e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.47e-96,42;CL:0002057,2.47e-96,42;CL:0000473,2.13e-83,48;CL:0000234,2.13e-83,48;CL:0002009,3.41e-67,61;CL:0002194,2.75e-65,59;CL:0000576,2.75e-65,59;CL:0000040,2.75e-65,59;CL:0000559,2.75e-65,59;CL:0000557,1.11e-64,67;CL:0000766,9.65e-64,72;CL:0000839,1.02e-57,66;CL:0000763,2.32e-48,108;CL:0000049,2.32e-48,108;CL:0000738,1.90e-41,136;CL:0002087,1.15e-39,115;CL:0002031,1.03e-37,120;CL:0000037,4.76e-36,168;CL:0002032,6.95e-36,161;CL:0000837,6.95e-36,161;CL:0000988,8.41e-34,177;CL:0000134,1.06e-12,354;CL:0002320,2.73e-12,361;CL:0000219,7.73e-11,386;CL:0000048,4.62e-09,427;CL:0000723,8.12e-09,433;CL:0000034,1.68e-08,441 | |||
|ontology_enrichment_development_v019=CL:0002057;4.14e-72;42!CL:0000049;3.26e-14;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.81e-35!102;UBERON:0003061!1.81e-35!102;UBERON:0002371!1.05e-34!80;UBERON:0002193!1.48e-33!112;UBERON:0001474!4.57e-32!86;UBERON:0002405!3.07e-28!115;UBERON:0004765!2.26e-26!101;UBERON:0001434!2.26e-26!101;UBERON:0003081!2.98e-10!216;UBERON:0002204!6.30e-10!167;UBERON:0002384!4.61e-09!375;UBERON:0001049!8.57e-07!57;UBERON:0005068!8.57e-07!57;UBERON:0006241!8.57e-07!57;UBERON:0007135!8.57e-07!57 | |ontology_enrichment_uberon=UBERON:0002390!1.81e-35!102;UBERON:0003061!1.81e-35!102;UBERON:0002371!1.05e-34!80;UBERON:0002193!1.48e-33!112;UBERON:0001474!4.57e-32!86;UBERON:0002405!3.07e-28!115;UBERON:0004765!2.26e-26!101;UBERON:0001434!2.26e-26!101;UBERON:0003081!2.98e-10!216;UBERON:0002204!6.30e-10!167;UBERON:0002384!4.61e-09!375;UBERON:0001049!8.57e-07!57;UBERON:0005068!8.57e-07!57;UBERON:0006241!8.57e-07!57;UBERON:0007135!8.57e-07!57 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.01e-56,76;UBERON:0001474,1.22e-51,82;UBERON:0004765,1.92e-46,90;UBERON:0002390,7.23e-45,98;UBERON:0003061,7.23e-45,98;UBERON:0002405,1.01e-44,93;UBERON:0001434,4.21e-41,100;UBERON:0002193,4.74e-40,108;UBERON:0002204,1.02e-21,167;UBERON:0003081,7.75e-18,203;UBERON:0002384,9.96e-12,371;UBERON:0000926,7.73e-09,315;UBERON:0004120,7.73e-09,315;UBERON:0006603,7.73e-09,315 | |||
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| ||
|short_description=p3@PTPN2 | |short_description=p3@PTPN2 | ||
}} | }} |
Latest revision as of 20:19, 18 September 2015
Short description: | p3@PTPN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PTPN2_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | -160bp_to_ENST00000327283_5end |
EntrezGene: | PTPN2 |
HGNC: | 9650 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.47e-96 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.47e-96 | 42 |
defensive cell | 2.13e-83 | 48 |
phagocyte | 2.13e-83 | 48 |
macrophage dendritic cell progenitor | 3.41e-67 | 61 |
monopoietic cell | 2.75e-65 | 59 |
monocyte | 2.75e-65 | 59 |
monoblast | 2.75e-65 | 59 |
promonocyte | 2.75e-65 | 59 |
granulocyte monocyte progenitor cell | 1.11e-64 | 67 |
myeloid leukocyte | 9.65e-64 | 72 |
myeloid lineage restricted progenitor cell | 1.02e-57 | 66 |
myeloid cell | 2.32e-48 | 108 |
common myeloid progenitor | 2.32e-48 | 108 |
leukocyte | 1.90e-41 | 136 |
nongranular leukocyte | 1.15e-39 | 115 |
hematopoietic lineage restricted progenitor cell | 1.03e-37 | 120 |
hematopoietic stem cell | 4.76e-36 | 168 |
hematopoietic oligopotent progenitor cell | 6.95e-36 | 161 |
hematopoietic multipotent progenitor cell | 6.95e-36 | 161 |
hematopoietic cell | 8.41e-34 | 177 |
mesenchymal cell | 1.06e-12 | 354 |
connective tissue cell | 2.73e-12 | 361 |
motile cell | 7.73e-11 | 386 |
multi fate stem cell | 4.62e-09 | 427 |
somatic stem cell | 8.12e-09 | 433 |
stem cell | 1.68e-08 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.01e-56 | 76 |
bone element | 1.22e-51 | 82 |
skeletal element | 1.92e-46 | 90 |
hematopoietic system | 7.23e-45 | 98 |
blood island | 7.23e-45 | 98 |
immune system | 1.01e-44 | 93 |
skeletal system | 4.21e-41 | 100 |
hemolymphoid system | 4.74e-40 | 108 |
musculoskeletal system | 1.02e-21 | 167 |
lateral plate mesoderm | 7.75e-18 | 203 |
connective tissue | 9.96e-12 | 371 |
mesoderm | 7.73e-09 | 315 |
mesoderm-derived structure | 7.73e-09 | 315 |
presumptive mesoderm | 7.73e-09 | 315 |