FFCP PHASE2:Hg19::chr5:77655955..77655973,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:9522 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA |HGNC=HGNC:10563 |TSSclassifier=st...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=9522 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | ||
|HGNC= | |HGNC=10563 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=O15126 | ||
|association_with_transcript=-365bp_to_ENST00000538629,NM_004866,uc003kfl.2,uc010jaa.2,uc011ctc.1,uc011ctd.1_5end | |association_with_transcript=-365bp_to_ENST00000538629,NM_004866,uc003kfl.2,uc010jaa.2,uc011ctc.1,uc011ctd.1_5end | ||
|cluster_id=chr5:77655955..77655973,+ | |cluster_id=chr5:77655955..77655973,+ |
Latest revision as of 19:56, 18 September 2015
Short description: | p9@SCAMP1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SCAMP1_5end |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | -365bp_to_ENST00000538629, NM_004866, uc003kfl.2, uc010jaa.2, uc011ctc.1, uc011ctd.1_5end |
EntrezGene: | SCAMP1 |
HGNC: | 10563 |
UniProt: | O15126 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p9@SCAMP1 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
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glial cell (sensu Vertebrata) | 8.23e-09 | 15 |
glial cell | 8.23e-09 | 15 |
glioblast | 8.23e-09 | 15 |
glioblast (sensu Vertebrata) | 8.23e-09 | 15 |
neuron associated cell | 5.54e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 5.54e-08 | 17 |
epithelial cell of lung | 6.15e-08 | 19 |
Showing 1 to 7 of 7 entries
Ontology term | p-value | n |
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respiratory tract epithelium | 6.15e-08 | 19 |
lung epithelium | 6.15e-08 | 19 |
lung | 5.57e-07 | 22 |
respiratory tube | 5.57e-07 | 22 |
respiration organ | 5.57e-07 | 22 |
pair of lungs | 5.57e-07 | 22 |
lung primordium | 5.57e-07 | 22 |
lung bud | 5.57e-07 | 22 |
retina | 8.48e-07 | 6 |
photoreceptor array | 8.48e-07 | 6 |
Showing 1 to 10 of 11 entries
Ontology term | p-value | n |
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lung carcinoma | 1.22e-15 | 9 |
lung large cell carcinoma | 2.31e-12 | 3 |
nervous system cancer | 4.54e-12 | 11 |
lung cancer | 8.46e-10 | 15 |
lung small cell carcinoma | 1.57e-09 | 4 |
respiratory system cancer | 3.01e-09 | 16 |
non-small cell lung carcinoma | 6.13e-08 | 5 |
Showing 1 to 7 of 7 entries