Personal tools

FFCP PHASE2:Hg19::chr5:77655955..77655973,+: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:9522 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA |HGNC=HGNC:10563 |TSSclassifier=st...")
 
No edit summary
 
Line 2: Line 2:
|DHSsupport=supported   
|DHSsupport=supported   
|DPIdataset=robust
|DPIdataset=robust
|EntrezGene=entrezgene:9522
|EntrezGene=9522
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA
|HGNC=HGNC:10563
|HGNC=10563
|TSSclassifier=strong
|TSSclassifier=strong
|UniProt=uniprot:O15126
|UniProt=O15126
|association_with_transcript=-365bp_to_ENST00000538629,NM_004866,uc003kfl.2,uc010jaa.2,uc011ctc.1,uc011ctd.1_5end
|association_with_transcript=-365bp_to_ENST00000538629,NM_004866,uc003kfl.2,uc010jaa.2,uc011ctc.1,uc011ctd.1_5end
|cluster_id=chr5:77655955..77655973,+
|cluster_id=chr5:77655955..77655973,+

Latest revision as of 19:56, 18 September 2015

Short description:p9@SCAMP1
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_9_at_SCAMP1_5end
Coexpression cluster:C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary
Association with transcript: -365bp_to_ENST00000538629, NM_004866, uc003kfl.2, uc010jaa.2, uc011ctc.1, uc011ctd.1_5end
EntrezGene:SCAMP1
HGNC: 10563
UniProt: O15126
Genome view:ZENBU


View on UCSC genome browser


Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression




0
1
2
3
4
5
6
7
8




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data