FFCP PHASE1:Hg19::chr1:173446463..173446490,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9588 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16753 | |||
|TSSclassifier=strong | |||
|UniProt=P30041 | |||
|association_with_transcript=0bp_to_ENST00000460950,NM_004905,uc001giy.1_5end | |||
|cluster_id=chr1:173446463..173446490,+ | |||
|description=CAGE_peak_1_at_PRDX6_5end | |||
|id=chr1:173446463..173446490,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.68e-18!180;CL:0000393!1.23e-13!60;CL:0000211!1.23e-13!60;CL:0002321!4.77e-13!248;CL:0000220!8.29e-13!246;CL:0000680!8.36e-13!57;CL:0000056!8.36e-13!57;CL:0000355!8.36e-13!57;CL:0000187!9.60e-13!54;CL:0000222!1.05e-12!119;CL:0000183!1.32e-12!59;CL:0000192!1.08e-10!42;CL:0000514!1.08e-10!42;CL:0000136!2.75e-08!15;CL:0000359!3.49e-08!32;CL:0000057!4.23e-08!75;CL:0002620!5.86e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0000136;1.67e-08;13!CL:0000192;6.73e-08;43!CL:0000359;1.03e-07;32!CL:0000393;1.04e-07;61!CL:0000211;1.04e-07;61!CL:0000187;1.41e-07;55!CL:0002620;5.78e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,9.84e-14,61;CL:0000211,9.84e-14,61;CL:0002321,1.97e-13,250;CL:0000222,4.05e-13,121;CL:0000680,6.72e-13,58;CL:0000056,6.72e-13,58;CL:0000355,6.72e-13,58;CL:0000187,7.77e-13,55;CL:0000192,8.86e-11,43;CL:0000514,8.86e-11,43;CL:0000057,1.87e-08,76;CL:0000136,2.75e-08,15;CL:0000359,3.49e-08,32;CL:0002620,5.86e-07,23 | |||
|ontology_enrichment_development_v019=CL:0000514;6.73e-08;43!CL:0000355;2.84e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!2.73e-17!70;UBERON:0000490!4.11e-16!138;UBERON:0005256!1.51e-15!143;UBERON:0000914!2.75e-15!83;UBERON:0002329!2.75e-15!83;UBERON:0003077!2.75e-15!83;UBERON:0003059!2.75e-15!83;UBERON:0007282!2.75e-15!83;UBERON:0009618!2.75e-15!83;UBERON:0007285!2.75e-15!83;UBERON:0000486!8.83e-15!82;UBERON:0001134!2.25e-14!61;UBERON:0002036!2.25e-14!61;UBERON:0003082!2.25e-14!61;UBERON:0002100!2.66e-14!216;UBERON:0001009!1.59e-13!113;UBERON:0003104!2.64e-13!238;UBERON:0009142!2.64e-13!238;UBERON:0000468!2.84e-13!659;UBERON:0002385!3.28e-13!63;UBERON:0001015!3.28e-13!63;UBERON:0000383!3.28e-13!63;UBERON:0004535!1.44e-12!110;UBERON:0003914!3.68e-12!118;UBERON:0004872!5.63e-12!84;UBERON:0000475!2.18e-10!365;UBERON:0001981!8.84e-10!60;UBERON:0007500!8.84e-10!60;UBERON:0004537!8.84e-10!60;UBERON:0006965!8.84e-10!60;UBERON:0002049!8.90e-10!79;UBERON:0007798!8.90e-10!79;UBERON:0000926!3.05e-09!448;UBERON:0004120!3.05e-09!448;UBERON:0006603!3.05e-09!448;UBERON:0001637!3.69e-09!42;UBERON:0003509!3.69e-09!42;UBERON:0004572!3.69e-09!42;UBERON:0000055!3.91e-09!69;UBERON:0000467!1.01e-08!625;UBERON:0000480!1.54e-08!626;UBERON:0000481!5.37e-08!347;UBERON:0000119!2.99e-07!312;UBERON:0000483!3.83e-07!309;UBERON:0001737!6.28e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;6.28e-07;9!UBERON:0001557;6.28e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000490,5.74e-19,148;UBERON:0002329,2.20e-17,71;UBERON:0003059,2.20e-17,71;UBERON:0007282,2.20e-17,71;UBERON:0004290,2.20e-17,71;UBERON:0009618,2.20e-17,71;UBERON:0005256,3.41e-17,122;UBERON:0007524,3.67e-17,73;UBERON:0003077,4.86e-17,72;UBERON:0007285,4.86e-17,72;UBERON:0007503,1.16e-16,78;UBERON:0003104,1.94e-15,160;UBERON:0009142,1.94e-15,160;UBERON:0002100,3.20e-15,199;UBERON:0000486,6.85e-15,83;UBERON:0001134,1.81e-14,62;UBERON:0002036,1.81e-14,62;UBERON:0003082,1.81e-14,62;UBERON:0002385,2.61e-13,64;UBERON:0001015,2.61e-13,64;UBERON:0000383,2.61e-13,64;UBERON:0001009,3.89e-13,112;UBERON:0004535,3.46e-12,109;UBERON:0003914,4.83e-12,117;UBERON:0004872,1.41e-11,83;UBERON:0002049,2.10e-09,78;UBERON:0007798,2.10e-09,78;UBERON:0007500,2.24e-09,59;UBERON:0001981,2.24e-09,59;UBERON:0004537,2.24e-09,59;UBERON:0006965,2.24e-09,59;UBERON:0001637,3.69e-09,42;UBERON:0003509,3.69e-09,42;UBERON:0004572,3.69e-09,42;UBERON:0000055,9.31e-09,68;UBERON:0000119,1.87e-07,309;UBERON:0000483,2.40e-07,306;UBERON:0001737,6.28e-07,9;UBERON:0002199,8.92e-07,46;UBERON:0002416,8.92e-07,46 | |||
|phase1_expression=448.927275177545,688.11908378562,699.838616336497,464.340104358525,850.120001600701,525.147791508422,802.960613793545,653.83006899677,1203.02100348846,347.713520149635,226.785379591039,346.229574826323,324.960917177455,219.685276504083,241.588686905651,404.067413017517,394.162221327681,446.219465226685,348.871951135212,208.813314498232,208.284705760382,185.878649836506,291.674470886547,317.95928944431,290.882295941158,64.1108474225311,64.8594656654572,62.8899142696297,61.7581914652779,59.8773861031652,67.190197519177,326.394534690019,308.13365491015,498.42840570483,121.313636108752,128.947493866091,139.460208684052,39.3336740057633,56.55353418658,53.1676633253837,73.6681910249351,76.4389051804792,71.3484322346697,72.8445176285619,77.0866925125171,62.5866877864566,86.4636017289147,73.5990519559068,89.1954348177898,85.7323329120008,80.9467832631958,90.099729587551,99.6315017328828,78.103646713643,111.04971900736,85.6502644918851,76.4137220161968,75.2823672891033,108.3536978993,73.4927472004254,86.3105119828706,83.7822302474259,75.3972625809768,65.6386115820349,98.9613503723471,91.9164063999646,83.458181365407,89.1932761661439,71.9646427419878,82.7489498326494,144.085081626742,89.1231879089907,89.2423932583294,72.2493079186841,97.585373683955,92.2498040236854,86.9423605073872,105.72453256042,56.093229757281,68.6880712416409,80.3623375884324,67.9510652004438,54.55883578301,61.1675244613587,56.039082993404,46.0868640371828,41.6411826517453,45.4054427564042,52.883589822789,63.9216015538694,35.8604170538952,46.9789751496751,40.138688953149,112.345629292172,88.5603529510827,125.107440268162,47.9971839077753,52.2704314456389,57.7740212188621,62.862122266895,84.0879447914663,113.154025570601,116.896037044747,50.1347055983281,53.3236692529455,66.0171005859191,42.2454027473424,46.4971490604201,43.830000127679,93.5651677194917,116.619707505628,88.9695473206611,73.1052756388958,81.5999525673625,67.9480904732349,53.3687004105537,56.7166330530843,58.0730382865645,39.7240916470619,76.7742648521073,85.2919324551908,77.9370676447667,63.9944256080534,70.1366629126213,96.1966594453063,60.1414220191803,77.1860317105784,49.3936520900594,78.0925371687841,68.2122942287983,689.973431668512,800.816826486142,846.578021966014,233.851131592814,239.639521283955,246.818468309244,342.768243179024,260.34965561191,221.116937346755,252.328054312398,221.343659946678,190.509065311423,231.691803354057,312.20050082449,155.458201560593,159.32870962883,144.791219005044,116.383424661007,103.531078851203,109.579962892222,403.487686954411,420.654717006895,356.166154649392,357.839927237898,371.257001045767,313.359449769737,379.534859230848,212.418576037188,226.623109331434,141.92153981222,278.355058122421,302.588298075968,162.301268269533,300.748399722921,310.284366038714,255.843721533889,192.87073108588,177.700916202682,447.684581400379,405.336436635591,293.305992032582,25.038279312852,46.533631697799,310.062871073342,239.043508765448,305.052902599973,243.235665153883,226.314093770814,210.673019025824,287.066931272861,345.866746164244,243.707537836154,310.899824364367,258.644490373801,282.789092386284,248.074823910043,220.09920315136,268.298039449697,363.978649584154,446.108964447759,407.546551864762,327.994554712035,384.124496985576,386.520620044588,223.140509181598,204.27346968947,146.825935050763,231.66055717,300.182052144168,776.367641733137,772.514502452456,219.341956482148,181.171616774604,211.676984229916,179.102869319382,301.277503270436,185.994716926367,380.564974501871,915.066531648885,956.309987129545,370.456963226914,357.708586532608,406.542227845641,1161.18591398565,1238.60767888673,136.877605447667,305.367574175197,397.330760660236,471.019331352646,220.000283330403,1396.25272736784,1510.47545662878,514.955518846951,185.143897330438,184.103631398813,151.146021770005,308.837423920136,287.854656794266,306.984397061268,292.220514088329,338.866902725969,374.466770411802,430.236213906994,385.301321977538,845.385718677181,224.289709239446,402.808750771629,790.644344666277,713.450408410526,738.457795562989,782.646030509067,701.78968942164,697.101078948402,842.695676001028,777.233223361496,741.407771435694,223.661102751268,252.435192846202,371.651332232254,486.598834686144,495.612186153359,265.363348502959,407.645035610169,57.8316660233192,292.835472171153,470.610503648856,230.475599358114,352.941505228925,174.618825079003,295.357140055709,331.02123819529,302.621022516357,398.354503989754,208.095076930263,402.359595146161,189.408779462529,242.141423077567,178.458394796053,252.075202949009,283.300433491308,77.0659229053554,232.132231018124,119.053560993271,336.504464012529,201.242589582234,182.039224859224,248.166666409593,263.604982232163,300.18863778636,394.623253554651,402.997682478536,333.383609789561,358.138084241149,328.230326908588,96.4533014298048,112.686585539692,155.899204789362,278.84808701701,165.038125788834,180.806520822038,118.332143109059,271.581486284464,197.925871250309,295.186600429324,693.025668177447,443.493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16041,64.7548354452531 | |||
|short_description=p1@PRDX6 | |||
}} |
Latest revision as of 17:39, 18 September 2015
Short description: | p1@PRDX6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRDX6_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000460950, NM_004905, uc001giy.1_5end |
EntrezGene: | PRDX6 |
HGNC: | 16753 |
UniProt: | P30041 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 9.84e-14 | 61 |
electrically active cell | 9.84e-14 | 61 |
embryonic cell | 1.97e-13 | 250 |
mesodermal cell | 4.05e-13 | 121 |
muscle precursor cell | 6.72e-13 | 58 |
myoblast | 6.72e-13 | 58 |
multi-potent skeletal muscle stem cell | 6.72e-13 | 58 |
muscle cell | 7.77e-13 | 55 |
smooth muscle cell | 8.86e-11 | 43 |
smooth muscle myoblast | 8.86e-11 | 43 |
fibroblast | 1.87e-08 | 76 |
fat cell | 2.75e-08 | 15 |
vascular associated smooth muscle cell | 3.49e-08 | 32 |
skin fibroblast | 5.86e-07 | 23 |