FFCP PHASE1:Hg19::chr1:173446463..173446490,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:173446463..173446490,+
|short_description=p1@PRDX6
|description=CAGE_peak_1_at_PRDX6_5end
|association_with_transcript=0bp_to_ENST00000460950,NM_004905,uc0...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9588 | |EntrezGene=9588 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16753 | |HGNC=16753 | ||
|TSSclassifier=strong | |||
|UniProt=P30041 | |UniProt=P30041 | ||
|association_with_transcript=0bp_to_ENST00000460950,NM_004905,uc001giy.1_5end | |||
|cluster_id=chr1:173446463..173446490,+ | |||
|description=CAGE_peak_1_at_PRDX6_5end | |||
|id=chr1:173446463..173446490,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.68e-18!180;CL:0000393!1.23e-13!60;CL:0000211!1.23e-13!60;CL:0002321!4.77e-13!248;CL:0000220!8.29e-13!246;CL:0000680!8.36e-13!57;CL:0000056!8.36e-13!57;CL:0000355!8.36e-13!57;CL:0000187!9.60e-13!54;CL:0000222!1.05e-12!119;CL:0000183!1.32e-12!59;CL:0000192!1.08e-10!42;CL:0000514!1.08e-10!42;CL:0000136!2.75e-08!15;CL:0000359!3.49e-08!32;CL:0000057!4.23e-08!75;CL:0002620!5.86e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0000136;1.67e-08;13!CL:0000192;6.73e-08;43!CL:0000359;1.03e-07;32!CL:0000393;1.04e-07;61!CL:0000211;1.04e-07;61!CL:0000187;1.41e-07;55!CL:0002620;5.78e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,9.84e-14,61;CL:0000211,9.84e-14,61;CL:0002321,1.97e-13,250;CL:0000222,4.05e-13,121;CL:0000680,6.72e-13,58;CL:0000056,6.72e-13,58;CL:0000355,6.72e-13,58;CL:0000187,7.77e-13,55;CL:0000192,8.86e-11,43;CL:0000514,8.86e-11,43;CL:0000057,1.87e-08,76;CL:0000136,2.75e-08,15;CL:0000359,3.49e-08,32;CL:0002620,5.86e-07,23 | |||
|ontology_enrichment_development_v019=CL:0000514;6.73e-08;43!CL:0000355;2.84e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!2.73e-17!70;UBERON:0000490!4.11e-16!138;UBERON:0005256!1.51e-15!143;UBERON:0000914!2.75e-15!83;UBERON:0002329!2.75e-15!83;UBERON:0003077!2.75e-15!83;UBERON:0003059!2.75e-15!83;UBERON:0007282!2.75e-15!83;UBERON:0009618!2.75e-15!83;UBERON:0007285!2.75e-15!83;UBERON:0000486!8.83e-15!82;UBERON:0001134!2.25e-14!61;UBERON:0002036!2.25e-14!61;UBERON:0003082!2.25e-14!61;UBERON:0002100!2.66e-14!216;UBERON:0001009!1.59e-13!113;UBERON:0003104!2.64e-13!238;UBERON:0009142!2.64e-13!238;UBERON:0000468!2.84e-13!659;UBERON:0002385!3.28e-13!63;UBERON:0001015!3.28e-13!63;UBERON:0000383!3.28e-13!63;UBERON:0004535!1.44e-12!110;UBERON:0003914!3.68e-12!118;UBERON:0004872!5.63e-12!84;UBERON:0000475!2.18e-10!365;UBERON:0001981!8.84e-10!60;UBERON:0007500!8.84e-10!60;UBERON:0004537!8.84e-10!60;UBERON:0006965!8.84e-10!60;UBERON:0002049!8.90e-10!79;UBERON:0007798!8.90e-10!79;UBERON:0000926!3.05e-09!448;UBERON:0004120!3.05e-09!448;UBERON:0006603!3.05e-09!448;UBERON:0001637!3.69e-09!42;UBERON:0003509!3.69e-09!42;UBERON:0004572!3.69e-09!42;UBERON:0000055!3.91e-09!69;UBERON:0000467!1.01e-08!625;UBERON:0000480!1.54e-08!626;UBERON:0000481!5.37e-08!347;UBERON:0000119!2.99e-07!312;UBERON:0000483!3.83e-07!309;UBERON:0001737!6.28e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;6.28e-07;9!UBERON:0001557;6.28e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000490,5.74e-19,148;UBERON:0002329,2.20e-17,71;UBERON:0003059,2.20e-17,71;UBERON:0007282,2.20e-17,71;UBERON:0004290,2.20e-17,71;UBERON:0009618,2.20e-17,71;UBERON:0005256,3.41e-17,122;UBERON:0007524,3.67e-17,73;UBERON:0003077,4.86e-17,72;UBERON:0007285,4.86e-17,72;UBERON:0007503,1.16e-16,78;UBERON:0003104,1.94e-15,160;UBERON:0009142,1.94e-15,160;UBERON:0002100,3.20e-15,199;UBERON:0000486,6.85e-15,83;UBERON:0001134,1.81e-14,62;UBERON:0002036,1.81e-14,62;UBERON:0003082,1.81e-14,62;UBERON:0002385,2.61e-13,64;UBERON:0001015,2.61e-13,64;UBERON:0000383,2.61e-13,64;UBERON:0001009,3.89e-13,112;UBERON:0004535,3.46e-12,109;UBERON:0003914,4.83e-12,117;UBERON:0004872,1.41e-11,83;UBERON:0002049,2.10e-09,78;UBERON:0007798,2.10e-09,78;UBERON:0007500,2.24e-09,59;UBERON:0001981,2.24e-09,59;UBERON:0004537,2.24e-09,59;UBERON:0006965,2.24e-09,59;UBERON:0001637,3.69e-09,42;UBERON:0003509,3.69e-09,42;UBERON:0004572,3.69e-09,42;UBERON:0000055,9.31e-09,68;UBERON:0000119,1.87e-07,309;UBERON:0000483,2.40e-07,306;UBERON:0001737,6.28e-07,9;UBERON:0002199,8.92e-07,46;UBERON:0002416,8.92e-07,46 | |||
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16041,64.7548354452531 | ||
|short_description=p1@PRDX6 | |||
}} | }} |
Latest revision as of 17:39, 18 September 2015
Short description: | p1@PRDX6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRDX6_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000460950, NM_004905, uc001giy.1_5end |
EntrezGene: | PRDX6 |
HGNC: | 16753 |
UniProt: | P30041 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 9.84e-14 | 61 |
electrically active cell | 9.84e-14 | 61 |
embryonic cell | 1.97e-13 | 250 |
mesodermal cell | 4.05e-13 | 121 |
muscle precursor cell | 6.72e-13 | 58 |
myoblast | 6.72e-13 | 58 |
multi-potent skeletal muscle stem cell | 6.72e-13 | 58 |
muscle cell | 7.77e-13 | 55 |
smooth muscle cell | 8.86e-11 | 43 |
smooth muscle myoblast | 8.86e-11 | 43 |
fibroblast | 1.87e-08 | 76 |
fat cell | 2.75e-08 | 15 |
vascular associated smooth muscle cell | 3.49e-08 | 32 |
skin fibroblast | 5.86e-07 | 23 |