FFCP PHASE1:Hg19::chr15:67430351..67430366,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4088 | |EntrezGene=4088 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6769 | |HGNC=6769 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z4Z5,P84022 | |UniProt=B7Z4Z5,P84022 | ||
|association_with_transcript=0bp_to_NM_001145103,uc010ujs.1_5end | |association_with_transcript=0bp_to_NM_001145103,uc010ujs.1_5end | ||
|cluster_id=chr15:67430351..67430366,+ | |||
|description=CAGE_peak_10_at_SMAD3_5end | |description=CAGE_peak_10_at_SMAD3_5end | ||
|id=chr15:67430351..67430366,+ | |id=chr15:67430351..67430366,+ | ||
|ontology_enrichment_celltype=CL:0000187!3.41e-13!54;CL:0000183!4.72e-13!59;CL:0000680!1.66e-12!57;CL:0000056!1.66e-12!57;CL:0000355!1.66e-12!57;CL:0000055!3.15e-12!180;CL:0000393!1.64e-10!60;CL:0000211!1.64e-10!60;CL:0000057!2.51e-10!75;CL:0000192!1.80e-09!42;CL:0000514!1.80e-09!42;CL:0000222!9.66e-09!119;CL:0002494!5.67e-08!16 | |ontology_enrichment_celltype=CL:0000187!3.41e-13!54;CL:0000183!4.72e-13!59;CL:0000680!1.66e-12!57;CL:0000056!1.66e-12!57;CL:0000355!1.66e-12!57;CL:0000055!3.15e-12!180;CL:0000393!1.64e-10!60;CL:0000211!1.64e-10!60;CL:0000057!2.51e-10!75;CL:0000192!1.80e-09!42;CL:0000514!1.80e-09!42;CL:0000222!9.66e-09!119;CL:0002494!5.67e-08!16 | ||
|ontology_enrichment_celltype_v019=CL:0002494;3.10e-09;16!CL:0000192;1.17e-08;43!CL:1000306;3.85e-08;4!CL:0002547;3.85e-08;4!CL:0000359;8.96e-08;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,1.26e-10,43;CL:0000514,1.26e-10,43;CL:0000187,2.54e-10,55;CL:0000680,1.76e-09,58;CL:0000056,1.76e-09,58;CL:0000355,1.76e-09,58;CL:0002494,5.07e-09,16;CL:0000393,9.95e-09,61;CL:0000211,9.95e-09,61;CL:0000222,1.52e-08,121;CL:0000359,3.58e-08,32;CL:1000306,4.80e-08,4;CL:0002547,4.80e-08,4;CL:0000057,9.33e-08,76 | |||
|ontology_enrichment_development_v019=CL:0000514;1.17e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!2.64e-17!84;UBERON:0007100!2.89e-15!27;UBERON:0000948!1.36e-13!24;UBERON:0005498!1.36e-13!24;UBERON:0004140!1.36e-13!24;UBERON:0009881!1.36e-13!24;UBERON:0004141!1.36e-13!24;UBERON:0003084!1.36e-13!24;UBERON:0007005!1.36e-13!24;UBERON:0004139!1.36e-13!24;UBERON:0004291!1.36e-13!24;UBERON:0001009!1.52e-12!113;UBERON:0002385!2.06e-12!63;UBERON:0001015!2.06e-12!63;UBERON:0000383!2.06e-12!63;UBERON:0001134!1.21e-11!61;UBERON:0002036!1.21e-11!61;UBERON:0003082!1.21e-11!61;UBERON:0004535!2.29e-11!110;UBERON:0000490!4.17e-11!138;UBERON:0003914!8.79e-11!118;UBERON:0001981!1.46e-10!60;UBERON:0007500!1.46e-10!60;UBERON:0004537!1.46e-10!60;UBERON:0006965!1.46e-10!60;UBERON:0000119!1.93e-10!312;UBERON:0004290!2.77e-10!70;UBERON:0000486!4.12e-10!82;UBERON:0002049!4.88e-10!79;UBERON:0007798!4.88e-10!79;UBERON:0000914!6.56e-10!83;UBERON:0002329!6.56e-10!83;UBERON:0003077!6.56e-10!83;UBERON:0003059!6.56e-10!83;UBERON:0007282!6.56e-10!83;UBERON:0009618!6.56e-10!83;UBERON:0007285!6.56e-10!83;UBERON:0000483!1.07e-09!309;UBERON:0000055!3.15e-09!69;UBERON:0005256!5.60e-09!143;UBERON:0000477!2.69e-08!286;UBERON:0000481!3.38e-08!347;UBERON:0003104!6.52e-08!238;UBERON:0009142!6.52e-08!238;UBERON:0001637!9.41e-08!42;UBERON:0003509!9.41e-08!42;UBERON:0004572!9.41e-08!42;UBERON:0004111!1.41e-07!241;UBERON:0004573!1.73e-07!33;UBERON:0004571!1.73e-07!33;UBERON:0002100!6.56e-07!216;UBERON:0000025!7.11e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;4.44e-18;25!UBERON:0000948;1.77e-16;22!UBERON:0001637;7.88e-09;42!UBERON:0003509;7.88e-09;42!UBERON:0004572;7.88e-09;42!UBERON:0004573;1.79e-08;33!UBERON:0004571;1.79e-08;33!UBERON:0004797;3.85e-08;4!UBERON:0000415;3.85e-08;4!UBERON:0007240;3.85e-08;4!UBERON:0005742;3.85e-08;4!UBERON:0005734;3.85e-08;4!UBERON:0004664;3.85e-08;4!UBERON:0004663;3.85e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,6.07e-21,27;UBERON:0004872,2.55e-20,83;UBERON:0000948,2.86e-19,24;UBERON:0005498,2.86e-19,24;UBERON:0004140,2.86e-19,24;UBERON:0009881,2.86e-19,24;UBERON:0004141,2.86e-19,24;UBERON:0003084,2.86e-19,24;UBERON:0007005,2.86e-19,24;UBERON:0004139,2.86e-19,24;UBERON:0004291,2.86e-19,24;UBERON:0001009,2.30e-15,112;UBERON:0003914,4.91e-15,117;UBERON:0004535,4.61e-14,109;UBERON:0007500,1.30e-12,59;UBERON:0001981,1.30e-12,59;UBERON:0004537,1.30e-12,59;UBERON:0006965,1.30e-12,59;UBERON:0001637,1.41e-12,42;UBERON:0003509,1.41e-12,42;UBERON:0004572,1.41e-12,42;UBERON:0000055,2.11e-12,68;UBERON:0004797,2.45e-12,7;UBERON:0002049,1.02e-10,78;UBERON:0007798,1.02e-10,78;UBERON:0004573,2.03e-10,33;UBERON:0004571,2.03e-10,33;UBERON:0005256,6.77e-10,122;UBERON:0002385,6.93e-10,64;UBERON:0001015,6.93e-10,64;UBERON:0000383,6.93e-10,64;UBERON:0001134,2.31e-09,62;UBERON:0002036,2.31e-09,62;UBERON:0003082,2.31e-09,62;UBERON:0003104,9.12e-09,160;UBERON:0009142,9.12e-09,160;UBERON:0000486,1.64e-08,83;UBERON:0003103,2.24e-08,68;UBERON:0000415,4.80e-08,4;UBERON:0007240,4.80e-08,4;UBERON:0005742,4.80e-08,4;UBERON:0005734,4.80e-08,4;UBERON:0004664,4.80e-08,4;UBERON:0004663,4.80e-08,4;UBERON:0000926,1.96e-07,315;UBERON:0004120,1.96e-07,315;UBERON:0006603,1.96e-07,315;UBERON:0002329,1.99e-07,71;UBERON:0003059,1.99e-07,71;UBERON:0007282,1.99e-07,71;UBERON:0004290,1.99e-07,71;UBERON:0009618,1.99e-07,71;UBERON:0003077,3.02e-07,72;UBERON:0007285,3.02e-07,72;UBERON:0004111,3.65e-07,240;UBERON:0007524,4.53e-07,73;UBERON:0004145,4.79e-07,3;UBERON:0000490,4.89e-07,148 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0.872338524100369,0,1.26343974685366,0.522371256399677,0.737201809504527,0,0,0,0,0,0,0,0,0,0.738726348460727,0.204000691244253,0,0,0.136874425072884,0,0,0,0,0,0,0,1.83884244895785,0.6024118375565,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,15.4261197731836,1.2786256184353,0,0,0,0,0,0.189069634328136,0.221729397462564,0,0.458426764241994,0.364295288292542,0,0,0,0,0,0,0,0.198762407366705,0,0.694281003215189,0,0,0,0,0,0,0,0,0,0,0.735326160691737,0,0.982297011124877,0.673588117878509,1.12611480483322,0,0,0.732806975721629,0,0,0.436094052142534,0,3.79891534993739,1.19168262731897,11.7603014507014,13.1227301413392,0,1.06748995729705,0.49333509683432,0.311211035399766,0.942974704487816,1.14423332179421,1.21085942115945,0.576175924479999,0,0.312160076830321,0.570471821544449,0.747243402759005,0,0,0,0,0,0.103325781175765,0,0.989067717114227,14.5625817910084,7.90479955997862,0,0,0.554128230968366,0.877955241761676,0.612975591598039,1.20190447125277,4.19699077692078,0,0.213557388818567,1.27159140695737,0.300091096084402,0.103052529238439,0,0.930584281657949,0.506328996723799,0.584622030967192,0.504867548488229,0.184099797284599,3.23292113637624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.20725321410337,3.2925920906512,7.3504355692771,0,0,0,0,0,0.343135620597051,0.439001141634502,0,0,0,0,1.03993478527958,0,0.34779121492523,0.352226082707465,0,0,0,0,0,0,0,0,0,0.335964256397719,0.425325291727159,0,0,0,0,0,0,0,0.25248486685276,0,0,0,0,0,0,0,0.448524337381443,4.79556075716608,0.36669142910475,1.29271715757778,0,4.22651376278,0.26593811658487,0,0,0,0.532844358032199,1.85871391755592,0.542621605391443,3.29296134712308,0.65147236858747,2.13235169245527,1.58390374586686,2.41151501647669,1.74306691720059,3.59902768255405,0,0,0,0,0,0,0,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391602314925481,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0.511707249066704,0,0,6.16838775210622,8.16783936440384,3.44934055257998,6.23105315020345,3.02146983995894,0,1.20303882181971,0.552485933615378,7.57775357886405,4.00600569614778,4.06485686374215,0,0,0,0,0,0,0.510281115829547,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0.325378394664303,0.206082023295445,0,0,0,0,1.6068392984416,0.290012154876366,0.462145851343933,0.921022048356777,0.137836572484531,0.537101224341368,0.290033387828457,0.596586391912706,0.623224249527161,0.165284915360978,0.576570202095319,1.14851441245126,0,1.85938219718914,4.7221852024596,0.6970372701606,0.308033580176089,5.85536633348724,1.73986598415015,0,2.14687330112987,0,0.316379424718726,0.38126038784765,0,0,16.2283656442228,7.8494864019923,0.539617372749944,1.37268514868027,0.235624804691373,5.66110948405285,1.58510321173008,0,1.46290121726877,0.243713489631284,1.05650146756755,5.59649636772742,7.07027159768564,29.3821103212631,7.71911480964574,0,0,0.578775534266688,0,0,5.5768229657955,2.53526042279017,0.717056761020258,0.491245205065606,0,5.67617702512956,1.26664581178598,7.57378253807774,0,0,0.577332676353072,2.01090682660736,0,0.659006605437454,1.72202149068492,0,3.10401107475673,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07667176470977,0,0,0,0,0,0,0,0.140669416410513,0,0,0,1.9924798825107,0,0,0,0,0.933118762985422,0,0,0,4.14302303675121,0,0,0,0.0927680981618513,0,0,0,0.724999575434793,4.66553137970549,0,0,0,0,0.347249989866585,0,0,1.52581736317083,0,0,0.219385397153973,0,0,1.00035336054936,0,0,0,0,0.638002319463839,0.366390373607449,0,0,0,0,0,0.19606253431774,0.335643173951685,0.189753732724185,0,0.843992258112108,0,0,0,0,0.884575645033392,0,0,0,0,0.269604531922708,0,0,0,0,0,0,0,0,0.947798694427319,0,0,0.664653872707185,0.661983911750998,0.313932918407225,0,0,0,0,0,0,1.92199335066233,1.0319161948297,0.0967563312890851,0,0,1.45483524732629,0,0.90392296312213,0,0,0.0633107959558787,0,0,0.640358984218058,0,0,0.114536596165916,0,0,1.73953549791606,0,0,0,0.203996435272644,0,0,0.136905378891993,0,0.429765441419957,0,1.67569440763353,1.3749625440701,10.0502223440754,0.399358000997982,1.71690419254628,3.57074331906996,1.41085292222125,1.08089965062721,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0.236417121897595,0.157363764404994,0,0,0,2.1440859791201,1.32418394073086,0,0,0.864221491201268,0,0,0,0,0.226624183040251,0.293104467356165,0,0,0.13223260174269,0.513260513652988,0,0.854299300541557,0.471612915298998,0,0.496166021811951,0,0,0,0,0,0,0.327872630709804,0.157054096250234,0,0,0,0,0.221858103073705,0.248385611765534,0,0,0,0,3.76425311517075,0,0,8.95528817321244,1.63599316893057,21.6374285986019,0.757612021100357,0.50313580350515,0.889811221596536,0.457680136793847,9.98124096837378,4.50767881690063,1.33069634990671,0.477890301491107,0,0.931577741257556,9.53824278033968,0.265841714557995,0.521745061811734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| ||
|short_description=p10@SMAD3 | |short_description=p10@SMAD3 | ||
}} | }} |
Latest revision as of 17:22, 18 September 2015
Short description: | p10@SMAD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_SMAD3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_001145103, uc010ujs.1_5end |
EntrezGene: | SMAD3 |
HGNC: | 6769 |
UniProt: | B7Z4Z5P84022 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 1.26e-10 | 43 |
smooth muscle myoblast | 1.26e-10 | 43 |
muscle cell | 2.54e-10 | 55 |
muscle precursor cell | 1.76e-09 | 58 |
myoblast | 1.76e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.76e-09 | 58 |
cardiocyte | 5.07e-09 | 16 |
electrically responsive cell | 9.95e-09 | 61 |
electrically active cell | 9.95e-09 | 61 |
mesodermal cell | 1.52e-08 | 121 |
vascular associated smooth muscle cell | 3.58e-08 | 32 |
fibroblast of tunica adventitia of artery | 4.80e-08 | 4 |
fibroblast of the aortic adventitia | 4.80e-08 | 4 |
fibroblast | 9.33e-08 | 76 |